data_3PR6 # _entry.id 3PR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PR6 RCSB RCSB062720 WWPDB D_1000062720 # _pdbx_database_status.entry_id 3PR6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-11-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, C.' 1 'Gohlke, U.' 2 'Heinemann, U.' 3 # _citation.id primary _citation.title 'Crystal structure of the yeast TRAPP-associated protein Tca17.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 281 _citation.page_first 4195 _citation.page_last 4206 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24961828 _citation.pdbx_database_id_DOI 10.1111/febs.12888 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, C.' 1 primary 'Gohlke, U.' 2 primary 'Roske, Y.' 3 primary 'Heinemann, U.' 4 # _cell.length_a 57.130 _cell.length_b 58.492 _cell.length_c 53.969 _cell.angle_alpha 90.000 _cell.angle_beta 92.620 _cell.angle_gamma 90.000 _cell.entry_id 3PR6 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3PR6 _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRAPP-associated protein TCA17' 18352.621 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '17 kDa TRAPP complex-associated protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPLGS(MSE)SLRP(CSO)FVSLIDESDKPILIYVPNEAENE(MSE)NDVLKYNVLSNISLDYFESALVEWHSLDSKPLL KSIFQLEGVSVFA(MSE)LIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGDEKSIIKSLER KFDELFISTEVELLAAAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMSLRPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVF AMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGDEKSIIKSLERKFDELFISTEVELLAA AS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MSE n 1 7 SER n 1 8 LEU n 1 9 ARG n 1 10 PRO n 1 11 CSO n 1 12 PHE n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 ILE n 1 17 ASP n 1 18 GLU n 1 19 SER n 1 20 ASP n 1 21 LYS n 1 22 PRO n 1 23 ILE n 1 24 LEU n 1 25 ILE n 1 26 TYR n 1 27 VAL n 1 28 PRO n 1 29 ASN n 1 30 GLU n 1 31 ALA n 1 32 GLU n 1 33 ASN n 1 34 GLU n 1 35 MSE n 1 36 ASN n 1 37 ASP n 1 38 VAL n 1 39 LEU n 1 40 LYS n 1 41 TYR n 1 42 ASN n 1 43 VAL n 1 44 LEU n 1 45 SER n 1 46 ASN n 1 47 ILE n 1 48 SER n 1 49 LEU n 1 50 ASP n 1 51 TYR n 1 52 PHE n 1 53 GLU n 1 54 SER n 1 55 ALA n 1 56 LEU n 1 57 VAL n 1 58 GLU n 1 59 TRP n 1 60 HIS n 1 61 SER n 1 62 LEU n 1 63 ASP n 1 64 SER n 1 65 LYS n 1 66 PRO n 1 67 LEU n 1 68 LEU n 1 69 LYS n 1 70 SER n 1 71 ILE n 1 72 PHE n 1 73 GLN n 1 74 LEU n 1 75 GLU n 1 76 GLY n 1 77 VAL n 1 78 SER n 1 79 VAL n 1 80 PHE n 1 81 ALA n 1 82 MSE n 1 83 LEU n 1 84 ILE n 1 85 LYS n 1 86 GLN n 1 87 THR n 1 88 GLY n 1 89 LEU n 1 90 LYS n 1 91 ILE n 1 92 VAL n 1 93 ILE n 1 94 GLY n 1 95 PHE n 1 96 GLU n 1 97 GLN n 1 98 LYS n 1 99 SER n 1 100 LEU n 1 101 SER n 1 102 GLY n 1 103 ALA n 1 104 ASP n 1 105 ASP n 1 106 GLU n 1 107 PHE n 1 108 GLU n 1 109 ALA n 1 110 ILE n 1 111 ASN n 1 112 GLN n 1 113 ILE n 1 114 PHE n 1 115 GLU n 1 116 THR n 1 117 VAL n 1 118 ARG n 1 119 LYS n 1 120 ILE n 1 121 TYR n 1 122 ILE n 1 123 ARG n 1 124 VAL n 1 125 LYS n 1 126 CYS n 1 127 ASN n 1 128 PRO n 1 129 LEU n 1 130 LEU n 1 131 VAL n 1 132 SER n 1 133 GLY n 1 134 ASP n 1 135 GLU n 1 136 LYS n 1 137 SER n 1 138 ILE n 1 139 ILE n 1 140 LYS n 1 141 SER n 1 142 LEU n 1 143 GLU n 1 144 ARG n 1 145 LYS n 1 146 PHE n 1 147 ASP n 1 148 GLU n 1 149 LEU n 1 150 PHE n 1 151 ILE n 1 152 SER n 1 153 THR n 1 154 GLU n 1 155 VAL n 1 156 GLU n 1 157 LEU n 1 158 LEU n 1 159 ALA n 1 160 ALA n 1 161 ALA n 1 162 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SYGP-ORF36, TCA17, YEL048C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-T1R' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGex6p-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TCA17_YEAST _struct_ref.pdbx_db_accession P32613 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSLRPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIK QTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGDEKSIIKSLERKFDELFISTEVEL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PR6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32613 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 152 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PR6 GLY A 1 ? UNP P32613 ? ? 'EXPRESSION TAG' -4 1 1 3PR6 PRO A 2 ? UNP P32613 ? ? 'EXPRESSION TAG' -3 2 1 3PR6 LEU A 3 ? UNP P32613 ? ? 'EXPRESSION TAG' -2 3 1 3PR6 GLY A 4 ? UNP P32613 ? ? 'EXPRESSION TAG' -1 4 1 3PR6 SER A 5 ? UNP P32613 ? ? 'EXPRESSION TAG' 0 5 1 3PR6 LEU A 158 ? UNP P32613 ? ? 'EXPRESSION TAG' 153 6 1 3PR6 ALA A 159 ? UNP P32613 ? ? 'EXPRESSION TAG' 154 7 1 3PR6 ALA A 160 ? UNP P32613 ? ? 'EXPRESSION TAG' 155 8 1 3PR6 ALA A 161 ? UNP P32613 ? ? 'EXPRESSION TAG' 156 9 1 3PR6 SER A 162 ? UNP P32613 ? ? 'EXPRESSION TAG' 157 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.entry_id 3PR6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.2 M magnesium chloride, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2010-05-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator Si-111 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9184 1.0 2 0.9796 1.0 3 0.9798 1.0 4 0.9720 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_wavelength 0.9184 _diffrn_source.pdbx_wavelength_list 0.9796,0.9798,0.9720 _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 # _reflns.entry_id 3PR6 _reflns.d_resolution_high 1.800 _reflns.number_obs 16453 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_netI_over_sigmaI 17.490 _reflns.percent_possible_obs 99.400 _reflns.B_iso_Wilson_estimate 35.308 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.25 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.800 1.850 3902 ? 1216 0.408 3.0 ? ? ? ? ? 99.500 1 1 1.850 1.900 3733 ? 1154 0.370 3.4 ? ? ? ? ? 99.700 2 1 1.900 1.950 3787 ? 1176 0.274 4.5 ? ? ? ? ? 99.500 3 1 1.950 2.010 3618 ? 1116 0.185 6.3 ? ? ? ? ? 100.000 4 1 2.010 2.080 3528 ? 1091 0.135 8.5 ? ? ? ? ? 99.400 5 1 2.080 2.150 3512 ? 1077 0.102 11.0 ? ? ? ? ? 99.700 6 1 2.150 2.230 3097 ? 958 0.079 13.0 ? ? ? ? ? 99.800 7 1 2.230 2.320 3193 ? 982 0.066 15.9 ? ? ? ? ? 100.000 8 1 2.320 2.430 3109 ? 953 0.057 17.9 ? ? ? ? ? 99.700 9 1 2.430 2.550 2923 ? 900 0.052 19.3 ? ? ? ? ? 99.900 10 1 2.550 2.680 2714 ? 837 0.042 22.5 ? ? ? ? ? 99.600 11 1 2.680 2.850 2611 ? 810 0.039 25.7 ? ? ? ? ? 99.300 12 1 2.850 3.040 2457 ? 750 0.034 28.6 ? ? ? ? ? 99.200 13 1 3.040 3.290 2268 ? 705 0.030 31.7 ? ? ? ? ? 99.400 14 1 3.290 3.600 2064 ? 652 0.028 34.2 ? ? ? ? ? 99.100 15 1 3.600 4.020 1923 ? 597 0.027 37.4 ? ? ? ? ? 100.000 16 1 4.020 4.650 1643 ? 514 0.027 38.3 ? ? ? ? ? 98.800 17 1 4.650 5.690 1408 ? 446 0.024 38.3 ? ? ? ? ? 98.500 18 1 5.690 8.050 1043 ? 339 0.030 37.4 ? ? ? ? ? 96.600 19 1 8.050 ? 520 ? 180 0.039 37.8 ? ? ? ? ? 90.500 20 1 # _refine.entry_id 3PR6 _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 29.2500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.2900 _refine.ls_number_reflns_obs 15631 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1851 _refine.ls_R_factor_R_work 0.1832 _refine.ls_wR_factor_R_work 0.1874 _refine.ls_R_factor_R_free 0.2196 _refine.ls_wR_factor_R_free 0.2274 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 823 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.7600 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -4.0400 _refine.aniso_B[2][2] 0.4100 _refine.aniso_B[3][3] 3.6300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.8900 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9600 _refine.correlation_coeff_Fo_to_Fc_free 0.9440 _refine.overall_SU_R_Cruickshank_DPI 0.0257 _refine.overall_SU_R_free 0.0250 _refine.pdbx_overall_ESU_R_Free 0.0250 _refine.overall_SU_ML 0.0690 _refine.overall_SU_B 5.2060 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8785 _refine.B_iso_max 73.750 _refine.B_iso_min 11.170 _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1164 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1304 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 29.2500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1222 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 840 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1657 1.277 2.001 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2080 0.849 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 154 5.275 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 36.892 25.577 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 235 12.269 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 15.867 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 197 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1318 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 229 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 744 0.731 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 296 0.198 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1220 1.350 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 478 2.186 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 432 3.737 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.7990 _refine_ls_shell.d_res_low 1.8460 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.7700 _refine_ls_shell.number_reflns_R_work 1127 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2030 _refine_ls_shell.R_factor_R_free 0.2470 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1186 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PR6 _struct.title 'Crystal structure analysis of yeast TRAPP associate protein Tca17' _struct.pdbx_descriptor 'TRAPP-associated protein TCA17' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PR6 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'longin fold, vesicle tethering regulation, TRAPP complex, trans-Golgi network, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 37 ? SER A 54 ? ASP A 32 SER A 49 1 ? 18 HELX_P HELX_P2 2 LYS A 98 ? LEU A 100 ? LYS A 93 LEU A 95 5 ? 3 HELX_P HELX_P3 3 ALA A 103 ? CYS A 126 ? ALA A 98 CYS A 121 1 ? 24 HELX_P HELX_P4 4 LEU A 129 ? GLY A 133 ? LEU A 124 GLY A 128 5 ? 5 HELX_P HELX_P5 5 ASP A 134 ? ILE A 151 ? ASP A 129 ILE A 146 1 ? 18 HELX_P HELX_P6 6 THR A 153 ? ALA A 159 ? THR A 148 ALA A 154 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 126 SG ? ? ? 1_555 A CYS 126 SG ? ? A CYS 121 A CYS 121 2_556 ? ? ? ? ? ? ? 2.262 ? covale1 covale ? ? A PRO 10 C ? ? ? 1_555 A CSO 11 N ? ? A PRO 5 A CSO 6 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A CSO 11 C ? ? ? 1_555 A PHE 12 N ? ? A CSO 6 A PHE 7 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A ALA 81 C ? ? ? 1_555 A MSE 82 N ? ? A ALA 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 82 C ? ? ? 1_555 A LEU 83 N ? ? A MSE 77 A LEU 78 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PRO A 22 ? TYR A 26 ? PRO A 17 TYR A 21 A 2 PHE A 12 ? ILE A 16 ? PHE A 7 ILE A 11 A 3 LYS A 90 ? GLU A 96 ? LYS A 85 GLU A 91 A 4 VAL A 77 ? LEU A 83 ? VAL A 72 LEU A 78 A 5 LYS A 69 ? LEU A 74 ? LYS A 64 LEU A 69 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 26 ? O TYR A 21 N VAL A 13 ? N VAL A 8 A 2 3 N SER A 14 ? N SER A 9 O VAL A 92 ? O VAL A 87 A 3 4 O ILE A 93 ? O ILE A 88 N PHE A 80 ? N PHE A 75 A 4 5 O VAL A 79 ? O VAL A 74 N PHE A 72 ? N PHE A 67 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 158' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 159' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 THR A 87 ? THR A 82 . ? 1_555 ? 2 AC1 2 ARG A 118 ? ARG A 113 . ? 1_555 ? 3 AC2 6 PHE A 52 ? PHE A 47 . ? 1_555 ? 4 AC2 6 GLU A 53 ? GLU A 48 . ? 1_555 ? 5 AC2 6 SER A 54 ? SER A 49 . ? 1_555 ? 6 AC2 6 LYS A 119 ? LYS A 114 . ? 4_546 ? 7 AC2 6 ARG A 123 ? ARG A 118 . ? 4_546 ? 8 AC2 6 HOH D . ? HOH A 201 . ? 1_555 ? # _atom_sites.entry_id 3PR6 _atom_sites.fract_transf_matrix[1][1] 0.017504 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000801 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017096 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018549 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 MSE 6 1 ? ? ? A . n A 1 7 SER 7 2 ? ? ? A . n A 1 8 LEU 8 3 3 LEU LEU A . n A 1 9 ARG 9 4 4 ARG ARG A . n A 1 10 PRO 10 5 5 PRO PRO A . n A 1 11 CSO 11 6 6 CSO CSO A . n A 1 12 PHE 12 7 7 PHE PHE A . n A 1 13 VAL 13 8 8 VAL VAL A . n A 1 14 SER 14 9 9 SER SER A . n A 1 15 LEU 15 10 10 LEU LEU A . n A 1 16 ILE 16 11 11 ILE ILE A . n A 1 17 ASP 17 12 12 ASP ASP A . n A 1 18 GLU 18 13 13 GLU GLU A . n A 1 19 SER 19 14 14 SER SER A . n A 1 20 ASP 20 15 15 ASP ASP A . n A 1 21 LYS 21 16 16 LYS LYS A . n A 1 22 PRO 22 17 17 PRO PRO A . n A 1 23 ILE 23 18 18 ILE ILE A . n A 1 24 LEU 24 19 19 LEU LEU A . n A 1 25 ILE 25 20 20 ILE ILE A . n A 1 26 TYR 26 21 21 TYR TYR A . n A 1 27 VAL 27 22 22 VAL VAL A . n A 1 28 PRO 28 23 23 PRO PRO A . n A 1 29 ASN 29 24 24 ASN ASN A . n A 1 30 GLU 30 25 ? ? ? A . n A 1 31 ALA 31 26 ? ? ? A . n A 1 32 GLU 32 27 ? ? ? A . n A 1 33 ASN 33 28 ? ? ? A . n A 1 34 GLU 34 29 ? ? ? A . n A 1 35 MSE 35 30 ? ? ? A . n A 1 36 ASN 36 31 ? ? ? A . n A 1 37 ASP 37 32 32 ASP ASP A . n A 1 38 VAL 38 33 33 VAL VAL A . n A 1 39 LEU 39 34 34 LEU LEU A . n A 1 40 LYS 40 35 35 LYS LYS A . n A 1 41 TYR 41 36 36 TYR TYR A . n A 1 42 ASN 42 37 37 ASN ASN A . n A 1 43 VAL 43 38 38 VAL VAL A . n A 1 44 LEU 44 39 39 LEU LEU A . n A 1 45 SER 45 40 40 SER SER A . n A 1 46 ASN 46 41 41 ASN ASN A . n A 1 47 ILE 47 42 42 ILE ILE A . n A 1 48 SER 48 43 43 SER SER A . n A 1 49 LEU 49 44 44 LEU LEU A . n A 1 50 ASP 50 45 45 ASP ASP A . n A 1 51 TYR 51 46 46 TYR TYR A . n A 1 52 PHE 52 47 47 PHE PHE A . n A 1 53 GLU 53 48 48 GLU GLU A . n A 1 54 SER 54 49 49 SER SER A . n A 1 55 ALA 55 50 50 ALA ALA A . n A 1 56 LEU 56 51 51 LEU LEU A . n A 1 57 VAL 57 52 52 VAL VAL A . n A 1 58 GLU 58 53 53 GLU GLU A . n A 1 59 TRP 59 54 54 TRP TRP A . n A 1 60 HIS 60 55 55 HIS HIS A . n A 1 61 SER 61 56 56 SER SER A . n A 1 62 LEU 62 57 57 LEU LEU A . n A 1 63 ASP 63 58 58 ASP ASP A . n A 1 64 SER 64 59 59 SER SER A . n A 1 65 LYS 65 60 60 LYS LYS A . n A 1 66 PRO 66 61 61 PRO PRO A . n A 1 67 LEU 67 62 62 LEU LEU A . n A 1 68 LEU 68 63 63 LEU LEU A . n A 1 69 LYS 69 64 64 LYS LYS A . n A 1 70 SER 70 65 65 SER SER A . n A 1 71 ILE 71 66 66 ILE ILE A . n A 1 72 PHE 72 67 67 PHE PHE A . n A 1 73 GLN 73 68 68 GLN GLN A . n A 1 74 LEU 74 69 69 LEU LEU A . n A 1 75 GLU 75 70 70 GLU GLU A . n A 1 76 GLY 76 71 71 GLY GLY A . n A 1 77 VAL 77 72 72 VAL VAL A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 VAL 79 74 74 VAL VAL A . n A 1 80 PHE 80 75 75 PHE PHE A . n A 1 81 ALA 81 76 76 ALA ALA A . n A 1 82 MSE 82 77 77 MSE MSE A . n A 1 83 LEU 83 78 78 LEU LEU A . n A 1 84 ILE 84 79 79 ILE ILE A . n A 1 85 LYS 85 80 80 LYS LYS A . n A 1 86 GLN 86 81 81 GLN GLN A . n A 1 87 THR 87 82 82 THR THR A . n A 1 88 GLY 88 83 83 GLY GLY A . n A 1 89 LEU 89 84 84 LEU LEU A . n A 1 90 LYS 90 85 85 LYS LYS A . n A 1 91 ILE 91 86 86 ILE ILE A . n A 1 92 VAL 92 87 87 VAL VAL A . n A 1 93 ILE 93 88 88 ILE ILE A . n A 1 94 GLY 94 89 89 GLY GLY A . n A 1 95 PHE 95 90 90 PHE PHE A . n A 1 96 GLU 96 91 91 GLU GLU A . n A 1 97 GLN 97 92 92 GLN GLN A . n A 1 98 LYS 98 93 93 LYS LYS A . n A 1 99 SER 99 94 94 SER SER A . n A 1 100 LEU 100 95 95 LEU LEU A . n A 1 101 SER 101 96 96 SER SER A . n A 1 102 GLY 102 97 97 GLY GLY A . n A 1 103 ALA 103 98 98 ALA ALA A . n A 1 104 ASP 104 99 99 ASP ASP A . n A 1 105 ASP 105 100 100 ASP ASP A . n A 1 106 GLU 106 101 101 GLU GLU A . n A 1 107 PHE 107 102 102 PHE PHE A . n A 1 108 GLU 108 103 103 GLU GLU A . n A 1 109 ALA 109 104 104 ALA ALA A . n A 1 110 ILE 110 105 105 ILE ILE A . n A 1 111 ASN 111 106 106 ASN ASN A . n A 1 112 GLN 112 107 107 GLN GLN A . n A 1 113 ILE 113 108 108 ILE ILE A . n A 1 114 PHE 114 109 109 PHE PHE A . n A 1 115 GLU 115 110 110 GLU GLU A . n A 1 116 THR 116 111 111 THR THR A . n A 1 117 VAL 117 112 112 VAL VAL A . n A 1 118 ARG 118 113 113 ARG ARG A . n A 1 119 LYS 119 114 114 LYS LYS A . n A 1 120 ILE 120 115 115 ILE ILE A . n A 1 121 TYR 121 116 116 TYR TYR A . n A 1 122 ILE 122 117 117 ILE ILE A . n A 1 123 ARG 123 118 118 ARG ARG A . n A 1 124 VAL 124 119 119 VAL VAL A . n A 1 125 LYS 125 120 120 LYS LYS A . n A 1 126 CYS 126 121 121 CYS CYS A . n A 1 127 ASN 127 122 122 ASN ASN A . n A 1 128 PRO 128 123 123 PRO PRO A . n A 1 129 LEU 129 124 124 LEU LEU A . n A 1 130 LEU 130 125 125 LEU LEU A . n A 1 131 VAL 131 126 126 VAL VAL A . n A 1 132 SER 132 127 127 SER SER A . n A 1 133 GLY 133 128 128 GLY GLY A . n A 1 134 ASP 134 129 129 ASP ASP A . n A 1 135 GLU 135 130 130 GLU GLU A . n A 1 136 LYS 136 131 131 LYS LYS A . n A 1 137 SER 137 132 132 SER SER A . n A 1 138 ILE 138 133 133 ILE ILE A . n A 1 139 ILE 139 134 134 ILE ILE A . n A 1 140 LYS 140 135 135 LYS LYS A . n A 1 141 SER 141 136 136 SER SER A . n A 1 142 LEU 142 137 137 LEU LEU A . n A 1 143 GLU 143 138 138 GLU GLU A . n A 1 144 ARG 144 139 139 ARG ARG A . n A 1 145 LYS 145 140 140 LYS LYS A . n A 1 146 PHE 146 141 141 PHE PHE A . n A 1 147 ASP 147 142 142 ASP ASP A . n A 1 148 GLU 148 143 143 GLU GLU A . n A 1 149 LEU 149 144 144 LEU LEU A . n A 1 150 PHE 150 145 145 PHE PHE A . n A 1 151 ILE 151 146 146 ILE ILE A . n A 1 152 SER 152 147 147 SER SER A . n A 1 153 THR 153 148 148 THR THR A . n A 1 154 GLU 154 149 149 GLU GLU A . n A 1 155 VAL 155 150 150 VAL VAL A . n A 1 156 GLU 156 151 151 GLU GLU A . n A 1 157 LEU 157 152 152 LEU LEU A . n A 1 158 LEU 158 153 153 LEU LEU A . n A 1 159 ALA 159 154 154 ALA ALA A . n A 1 160 ALA 160 155 ? ? ? A . n A 1 161 ALA 161 156 ? ? ? A . n A 1 162 SER 162 157 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 158 1 CL CL A . C 3 GOL 1 159 2 GOL GOL A . D 4 HOH 1 160 1 HOH HOH A . D 4 HOH 2 161 2 HOH HOH A . D 4 HOH 3 162 3 HOH HOH A . D 4 HOH 4 163 4 HOH HOH A . D 4 HOH 5 164 5 HOH HOH A . D 4 HOH 6 165 6 HOH HOH A . D 4 HOH 7 166 7 HOH HOH A . D 4 HOH 8 167 8 HOH HOH A . D 4 HOH 9 168 9 HOH HOH A . D 4 HOH 10 169 10 HOH HOH A . D 4 HOH 11 170 11 HOH HOH A . D 4 HOH 12 171 12 HOH HOH A . D 4 HOH 13 172 13 HOH HOH A . D 4 HOH 14 173 14 HOH HOH A . D 4 HOH 15 174 15 HOH HOH A . D 4 HOH 16 175 16 HOH HOH A . D 4 HOH 17 176 17 HOH HOH A . D 4 HOH 18 177 18 HOH HOH A . D 4 HOH 19 178 19 HOH HOH A . D 4 HOH 20 179 20 HOH HOH A . D 4 HOH 21 180 21 HOH HOH A . D 4 HOH 22 181 22 HOH HOH A . D 4 HOH 23 182 23 HOH HOH A . D 4 HOH 24 183 24 HOH HOH A . D 4 HOH 25 184 25 HOH HOH A . D 4 HOH 26 185 26 HOH HOH A . D 4 HOH 27 186 27 HOH HOH A . D 4 HOH 28 187 28 HOH HOH A . D 4 HOH 29 188 29 HOH HOH A . D 4 HOH 30 189 30 HOH HOH A . D 4 HOH 31 190 31 HOH HOH A . D 4 HOH 32 191 32 HOH HOH A . D 4 HOH 33 192 33 HOH HOH A . D 4 HOH 34 193 34 HOH HOH A . D 4 HOH 35 194 35 HOH HOH A . D 4 HOH 36 195 36 HOH HOH A . D 4 HOH 37 196 37 HOH HOH A . D 4 HOH 38 197 38 HOH HOH A . D 4 HOH 39 198 39 HOH HOH A . D 4 HOH 40 199 40 HOH HOH A . D 4 HOH 41 200 41 HOH HOH A . D 4 HOH 42 201 42 HOH HOH A . D 4 HOH 43 202 43 HOH HOH A . D 4 HOH 44 203 44 HOH HOH A . D 4 HOH 45 204 45 HOH HOH A . D 4 HOH 46 205 46 HOH HOH A . D 4 HOH 47 206 47 HOH HOH A . D 4 HOH 48 207 48 HOH HOH A . D 4 HOH 49 208 49 HOH HOH A . D 4 HOH 50 209 50 HOH HOH A . D 4 HOH 51 210 51 HOH HOH A . D 4 HOH 52 211 52 HOH HOH A . D 4 HOH 53 212 53 HOH HOH A . D 4 HOH 54 213 54 HOH HOH A . D 4 HOH 55 214 55 HOH HOH A . D 4 HOH 56 215 56 HOH HOH A . D 4 HOH 57 216 57 HOH HOH A . D 4 HOH 58 217 58 HOH HOH A . D 4 HOH 59 218 59 HOH HOH A . D 4 HOH 60 219 60 HOH HOH A . D 4 HOH 61 220 61 HOH HOH A . D 4 HOH 62 221 62 HOH HOH A . D 4 HOH 63 222 63 HOH HOH A . D 4 HOH 64 223 64 HOH HOH A . D 4 HOH 65 224 65 HOH HOH A . D 4 HOH 66 225 66 HOH HOH A . D 4 HOH 67 226 67 HOH HOH A . D 4 HOH 68 227 68 HOH HOH A . D 4 HOH 69 228 69 HOH HOH A . D 4 HOH 70 229 70 HOH HOH A . D 4 HOH 71 230 71 HOH HOH A . D 4 HOH 72 231 72 HOH HOH A . D 4 HOH 73 232 73 HOH HOH A . D 4 HOH 74 233 74 HOH HOH A . D 4 HOH 75 234 75 HOH HOH A . D 4 HOH 76 235 76 HOH HOH A . D 4 HOH 77 236 77 HOH HOH A . D 4 HOH 78 237 78 HOH HOH A . D 4 HOH 79 238 79 HOH HOH A . D 4 HOH 80 239 80 HOH HOH A . D 4 HOH 81 240 81 HOH HOH A . D 4 HOH 82 241 82 HOH HOH A . D 4 HOH 83 242 83 HOH HOH A . D 4 HOH 84 243 84 HOH HOH A . D 4 HOH 85 244 85 HOH HOH A . D 4 HOH 86 245 86 HOH HOH A . D 4 HOH 87 246 87 HOH HOH A . D 4 HOH 88 247 88 HOH HOH A . D 4 HOH 89 248 89 HOH HOH A . D 4 HOH 90 249 90 HOH HOH A . D 4 HOH 91 250 91 HOH HOH A . D 4 HOH 92 251 92 HOH HOH A . D 4 HOH 93 252 93 HOH HOH A . D 4 HOH 94 253 94 HOH HOH A . D 4 HOH 95 254 95 HOH HOH A . D 4 HOH 96 255 96 HOH HOH A . D 4 HOH 97 256 97 HOH HOH A . D 4 HOH 98 257 98 HOH HOH A . D 4 HOH 99 258 99 HOH HOH A . D 4 HOH 100 259 100 HOH HOH A . D 4 HOH 101 260 101 HOH HOH A . D 4 HOH 102 261 102 HOH HOH A . D 4 HOH 103 262 103 HOH HOH A . D 4 HOH 104 263 104 HOH HOH A . D 4 HOH 105 264 105 HOH HOH A . D 4 HOH 106 265 106 HOH HOH A . D 4 HOH 107 266 107 HOH HOH A . D 4 HOH 108 267 108 HOH HOH A . D 4 HOH 109 268 109 HOH HOH A . D 4 HOH 110 269 110 HOH HOH A . D 4 HOH 111 270 111 HOH HOH A . D 4 HOH 112 271 112 HOH HOH A . D 4 HOH 113 272 113 HOH HOH A . D 4 HOH 114 273 114 HOH HOH A . D 4 HOH 115 274 115 HOH HOH A . D 4 HOH 116 275 116 HOH HOH A . D 4 HOH 117 276 117 HOH HOH A . D 4 HOH 118 277 118 HOH HOH A . D 4 HOH 119 278 119 HOH HOH A . D 4 HOH 120 279 120 HOH HOH A . D 4 HOH 121 280 121 HOH HOH A . D 4 HOH 122 281 122 HOH HOH A . D 4 HOH 123 282 123 HOH HOH A . D 4 HOH 124 283 124 HOH HOH A . D 4 HOH 125 284 125 HOH HOH A . D 4 HOH 126 285 126 HOH HOH A . D 4 HOH 127 286 127 HOH HOH A . D 4 HOH 128 287 128 HOH HOH A . D 4 HOH 129 288 129 HOH HOH A . D 4 HOH 130 289 130 HOH HOH A . D 4 HOH 131 290 131 HOH HOH A . D 4 HOH 132 291 132 HOH HOH A . D 4 HOH 133 292 133 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CSO 11 A CSO 6 ? CYS S-HYDROXYCYSTEINE 2 A MSE 82 A MSE 77 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1480 ? 2 MORE -32 ? 2 'SSA (A^2)' 16440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4670142985 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 53.9125848152 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-30 2 'Structure model' 1 1 2014-07-09 3 'Structure model' 1 2 2014-10-01 4 'Structure model' 1 3 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 12.6391 -5.4893 16.9869 0.0876 0.1113 0.1549 0.0275 -0.0198 -0.0248 2.4061 1.5299 0.6802 -0.1907 0.0129 -0.4414 0.0593 -0.0493 -0.0100 0.3195 -0.0344 0.1362 -0.2345 0.0714 -0.1291 'X-RAY DIFFRACTION' 2 ? refined 13.2665 2.9796 17.4436 0.1061 0.1020 0.1483 0.0088 0.0012 0.0164 2.6289 0.6645 0.5730 -0.7281 -0.3630 0.1249 0.0395 -0.0715 0.0320 0.2500 0.0550 -0.0285 -0.0497 0.0323 0.0634 'X-RAY DIFFRACTION' 3 ? refined 8.4890 9.2968 3.8493 0.0789 0.2280 0.1130 0.0955 0.0318 0.2144 4.8094 5.1657 16.5513 4.7151 -7.9337 -4.0733 -0.0496 0.0924 -0.0428 0.3398 0.3387 0.0674 -0.5064 -0.2819 -0.0038 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 59 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 60 A 136 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 137 A 154 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 DM . ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 . ? ? ? ? 'data collection' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A MSE 1 ? A MSE 6 7 1 Y 1 A SER 2 ? A SER 7 8 1 Y 1 A GLU 25 ? A GLU 30 9 1 Y 1 A ALA 26 ? A ALA 31 10 1 Y 1 A GLU 27 ? A GLU 32 11 1 Y 1 A ASN 28 ? A ASN 33 12 1 Y 1 A GLU 29 ? A GLU 34 13 1 Y 1 A MSE 30 ? A MSE 35 14 1 Y 1 A ASN 31 ? A ASN 36 15 1 Y 1 A ALA 155 ? A ALA 160 16 1 Y 1 A ALA 156 ? A ALA 161 17 1 Y 1 A SER 157 ? A SER 162 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 GLYCEROL GOL 4 water HOH #