HEADER TRANSFERASE 01-DEC-10 3PS9 TITLE CRYSTAL STRUCTURE OF MNMC FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA 5-METHYLAMINOMETHYL-2-THIOURIDINE BIOSYNTHESIS COMPND 3 BIFUNCTIONAL PROTEIN MNMC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRNA MNM(5)S(2)U BIOSYNTHESIS BIFUNCTIONAL PROTEIN; COMPND 6 EC: 2.1.1.61; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511693; SOURCE 4 STRAIN: BL21; SOURCE 5 GENE: B21_02209, MNMC, YFCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS ROSSMANN FOLD, OXIDASE, METHYL TRANSFERASE, FAD, SAM BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,S.C.ALMO REVDAT 4 21-FEB-24 3PS9 1 REMARK SEQADV REVDAT 3 21-AUG-13 3PS9 1 JRNL REVDAT 2 13-JUL-11 3PS9 1 VERSN REVDAT 1 22-DEC-10 3PS9 0 JRNL AUTH J.KIM,S.C.ALMO JRNL TITL STRUCTURAL BASIS FOR HYPERMODIFICATION OF THE WOBBLE URIDINE JRNL TITL 2 IN TRNA BY BIFUNCTIONAL ENZYME MNMC. JRNL REF BMC STRUCT.BIOL. V. 13 5 2013 JRNL REFN ESSN 1472-6807 JRNL PMID 23617613 JRNL DOI 10.1186/1472-6807-13-5 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.972 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5443 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7423 ; 1.405 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 6.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;36.630 ;24.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;19.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;21.258 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4262 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3338 ; 1.010 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5328 ; 1.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2105 ; 3.178 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2094 ; 5.043 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3304 34.7010 -3.0964 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0229 REMARK 3 T33: 0.0067 T12: -0.0035 REMARK 3 T13: 0.0014 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6014 L22: 0.3890 REMARK 3 L33: 0.5881 L12: -0.0116 REMARK 3 L13: -0.0285 L23: -0.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0682 S13: -0.0461 REMARK 3 S21: -0.0061 S22: 0.0089 S23: 0.0095 REMARK 3 S31: -0.0140 S32: -0.0260 S33: -0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.22900 REMARK 200 R SYM (I) : 0.19100 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13230 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.23 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M TRI-AMMONIUM CITRATE, PH 7.0, REMARK 280 0.5% ETHYL ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.03150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.03150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.79750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.03150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.03150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.39250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.03150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.03150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.79750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.03150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.03150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.39250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 664 REMARK 465 VAL A 665 REMARK 465 LYS A 666 REMARK 465 ALA A 667 REMARK 465 GLY A 668 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -7 CG CD1 CD2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 ASP A 439 CG OD1 OD2 REMARK 470 GLN A 550 CG CD OE1 NE2 REMARK 470 GLN A 596 CG CD OE1 NE2 REMARK 470 GLU A 599 CG CD OE1 OE2 REMARK 470 LYS A 661 CG CD CE NZ REMARK 470 LYS A 663 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 13 -168.31 -114.74 REMARK 500 PRO A 56 34.03 -85.03 REMARK 500 ASP A 178 -168.56 -107.44 REMARK 500 LYS A 184 16.88 -155.14 REMARK 500 ASN A 185 53.53 -143.73 REMARK 500 TRP A 189 59.19 -91.77 REMARK 500 GLU A 245 36.43 -95.80 REMARK 500 ASP A 439 -109.94 51.36 REMARK 500 TYR A 501 -139.22 -149.69 REMARK 500 SER A 592 57.01 -118.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 669 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 670 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 671 DBREF 3PS9 A 1 668 UNP C5W761 C5W761_ECOBB 1 668 SEQADV 3PS9 LEU A -7 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 GLY A -6 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 THR A -5 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 ASP A -4 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 ASP A -3 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 ASP A -2 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 ASP A -1 UNP C5W761 EXPRESSION TAG SEQADV 3PS9 LYS A 0 UNP C5W761 EXPRESSION TAG SEQRES 1 A 676 LEU GLY THR ASP ASP ASP ASP LYS MET LYS HIS TYR SER SEQRES 2 A 676 ILE GLN PRO ALA ASN LEU GLU PHE ASN ALA GLU GLY THR SEQRES 3 A 676 PRO VAL SER ARG ASP PHE ASP ASP VAL TYR PHE SER ASN SEQRES 4 A 676 ASP ASN GLY LEU GLU GLU THR ARG TYR VAL PHE LEU GLY SEQRES 5 A 676 GLY ASN GLN LEU GLU VAL ARG PHE PRO GLU HIS PRO HIS SEQRES 6 A 676 PRO LEU PHE VAL VAL ALA GLU SER GLY PHE GLY THR GLY SEQRES 7 A 676 LEU ASN PHE LEU THR LEU TRP GLN ALA PHE ASP GLN PHE SEQRES 8 A 676 ARG GLU ALA HIS PRO GLN ALA GLN LEU GLN ARG LEU HIS SEQRES 9 A 676 PHE ILE SER PHE GLU LYS PHE PRO LEU THR ARG ALA ASP SEQRES 10 A 676 LEU ALA LEU ALA HIS GLN HIS TRP PRO GLU LEU ALA PRO SEQRES 11 A 676 TRP ALA GLU GLN LEU GLN ALA GLN TRP PRO MET PRO LEU SEQRES 12 A 676 PRO GLY CYS HIS ARG LEU LEU LEU ASP ALA GLY ARG VAL SEQRES 13 A 676 THR LEU ASP LEU TRP PHE GLY ASP ILE ASN GLU LEU THR SEQRES 14 A 676 SER GLN LEU ASP ASP SER LEU ASN GLN LYS VAL ASP ALA SEQRES 15 A 676 TRP PHE LEU ASP GLY PHE ALA PRO ALA LYS ASN PRO ASP SEQRES 16 A 676 MET TRP THR GLN ASN LEU PHE ASN ALA MET ALA ARG LEU SEQRES 17 A 676 ALA ARG PRO GLY GLY THR LEU ALA THR PHE THR SER ALA SEQRES 18 A 676 GLY PHE VAL ARG ARG GLY LEU GLN ASP ALA GLY PHE THR SEQRES 19 A 676 MET GLN LYS ARG LYS GLY PHE GLY ARG LYS ARG GLU MET SEQRES 20 A 676 LEU CYS GLY VAL MET GLU GLN THR LEU PRO LEU PRO CYS SEQRES 21 A 676 SER ALA PRO TRP PHE ASN ARG THR GLY SER SER LYS ARG SEQRES 22 A 676 GLU ALA ALA ILE ILE GLY GLY GLY ILE ALA SER ALA LEU SEQRES 23 A 676 LEU SER LEU ALA LEU LEU ARG ARG GLY TRP GLN VAL THR SEQRES 24 A 676 LEU TYR CYS ALA ASP GLU ALA PRO ALA LEU GLY ALA SER SEQRES 25 A 676 GLY ASN ARG GLN GLY ALA LEU TYR PRO LEU LEU SER LYS SEQRES 26 A 676 HIS ASP GLU ALA LEU ASN ARG PHE PHE SER ASN ALA PHE SEQRES 27 A 676 THR PHE ALA ARG ARG PHE TYR ASP GLN LEU PRO VAL LYS SEQRES 28 A 676 PHE ASP HIS ASP TRP CYS GLY VAL THR GLN LEU GLY TRP SEQRES 29 A 676 ASP GLU LYS SER GLN HIS LYS ILE ALA GLN MET LEU SER SEQRES 30 A 676 MET ASP LEU PRO ALA GLU LEU ALA VAL ALA VAL GLU ALA SEQRES 31 A 676 ASN ALA VAL GLU GLN ILE THR GLY VAL ALA THR ASN CYS SEQRES 32 A 676 SER GLY ILE THR TYR PRO GLN GLY GLY TRP LEU CYS PRO SEQRES 33 A 676 ALA GLU LEU THR ARG ASN VAL LEU GLU LEU ALA GLN GLN SEQRES 34 A 676 GLN GLY LEU GLN ILE TYR TYR GLN TYR GLN LEU GLN ASN SEQRES 35 A 676 PHE SER ARG LYS ASP ASP CYS TRP LEU LEU ASN PHE ALA SEQRES 36 A 676 GLY ASP GLN GLN ALA THR HIS SER VAL VAL VAL LEU ALA SEQRES 37 A 676 ASN GLY HIS GLN ILE SER ARG PHE SER GLN THR SER THR SEQRES 38 A 676 LEU PRO VAL TYR SER VAL ALA GLY GLN VAL SER HIS ILE SEQRES 39 A 676 PRO THR THR PRO GLU LEU ALA GLU LEU LYS GLN VAL LEU SEQRES 40 A 676 CYS TYR ASP GLY TYR LEU THR PRO GLN ASN PRO ALA ASN SEQRES 41 A 676 GLN HIS HIS CYS ILE GLY ALA SER TYR HIS ARG GLY SER SEQRES 42 A 676 GLU ASP THR ALA TYR SER GLU ASP ASP GLN GLN GLN ASN SEQRES 43 A 676 ARG GLN ARG LEU ILE ASP CYS PHE PRO GLN ALA GLN TRP SEQRES 44 A 676 ALA LYS GLU VAL ASP VAL SER ASP LYS GLU ALA ARG CYS SEQRES 45 A 676 GLY VAL ARG CYS ALA THR ARG ASP HIS LEU PRO MET VAL SEQRES 46 A 676 GLY ASN VAL PRO ASP TYR GLU ALA THR LEU VAL GLU TYR SEQRES 47 A 676 ALA SER LEU ALA GLU GLN LYS ASP GLU ALA VAL SER ALA SEQRES 48 A 676 PRO VAL PHE ASP ASP LEU PHE MET PHE ALA ALA LEU GLY SEQRES 49 A 676 SER ARG GLY LEU CYS SER ALA PRO LEU CYS ALA GLU ILE SEQRES 50 A 676 LEU ALA ALA GLN MET SER ASP GLU PRO ILE PRO MET ASP SEQRES 51 A 676 ALA SER THR LEU ALA ALA LEU ASN PRO ASN ARG LEU TRP SEQRES 52 A 676 VAL ARG LYS LEU LEU LYS GLY LYS ALA VAL LYS ALA GLY HET FAD A 669 53 HET SAM A 670 27 HET CL A 671 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CL CHLORIDE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 CL CL 1- FORMUL 5 HOH *222(H2 O) HELIX 1 1 ASP A -4 LYS A 2 5 7 HELIX 2 2 ASN A 33 PHE A 42 1 10 HELIX 3 3 LEU A 43 ASN A 46 5 4 HELIX 4 4 GLN A 47 PHE A 52 1 6 HELIX 5 5 PRO A 53 HIS A 55 5 3 HELIX 6 6 GLY A 70 HIS A 87 1 18 HELIX 7 7 THR A 106 GLN A 115 1 10 HELIX 8 8 HIS A 116 GLU A 119 5 4 HELIX 9 9 LEU A 120 TRP A 131 1 12 HELIX 10 10 ASP A 144 GLY A 146 5 3 HELIX 11 11 ASP A 156 THR A 161 1 6 HELIX 12 12 SER A 162 LEU A 164 5 3 HELIX 13 13 ASP A 165 ASN A 169 5 5 HELIX 14 14 ALA A 181 TRP A 189 5 9 HELIX 15 15 THR A 190 LEU A 200 1 11 HELIX 16 16 ALA A 213 GLY A 224 1 12 HELIX 17 17 ALA A 254 ASN A 258 5 5 HELIX 18 18 GLY A 273 ARG A 285 1 13 HELIX 19 19 ASP A 319 LEU A 340 1 22 HELIX 20 20 ASP A 357 SER A 369 1 13 HELIX 21 21 GLU A 381 GLY A 390 1 10 HELIX 22 22 CYS A 407 GLN A 422 1 16 HELIX 23 23 ASN A 461 ARG A 467 5 7 HELIX 24 24 GLU A 491 LEU A 495 5 5 HELIX 25 25 SER A 531 PHE A 546 1 16 HELIX 26 26 ALA A 549 GLU A 554 1 6 HELIX 27 27 ASP A 582 TYR A 590 1 9 HELIX 28 28 ARG A 618 SER A 635 1 18 HELIX 29 29 ASP A 642 ALA A 648 1 7 HELIX 30 30 ASN A 652 LYS A 661 1 10 SHEET 1 A 3 LEU A 11 GLU A 12 0 SHEET 2 A 3 VAL A 20 SER A 21 -1 O VAL A 20 N GLU A 12 SHEET 3 A 3 ASP A 26 VAL A 27 -1 O ASP A 26 N SER A 21 SHEET 1 B 8 GLY A 137 LEU A 143 0 SHEET 2 B 8 VAL A 148 PHE A 154 -1 O VAL A 148 N LEU A 143 SHEET 3 B 8 ARG A 94 GLU A 101 1 N SER A 99 O TRP A 153 SHEET 4 B 8 LEU A 59 SER A 65 1 N GLU A 64 O ILE A 98 SHEET 5 B 8 VAL A 172 LEU A 177 1 O PHE A 176 N ALA A 63 SHEET 6 B 8 ALA A 201 THR A 209 1 O ARG A 202 N VAL A 172 SHEET 7 B 8 GLU A 238 VAL A 243 -1 O GLY A 242 N LEU A 207 SHEET 8 B 8 THR A 226 LYS A 231 -1 N ARG A 230 O MET A 239 SHEET 1 C 6 GLN A 425 TYR A 428 0 SHEET 2 C 6 GLN A 289 CYS A 294 1 N LEU A 292 O GLN A 425 SHEET 3 C 6 GLU A 266 ILE A 270 1 N ILE A 269 O TYR A 293 SHEET 4 C 6 VAL A 456 LEU A 459 1 O VAL A 456 N ALA A 268 SHEET 5 C 6 VAL A 605 ALA A 613 1 O PHE A 610 N VAL A 457 SHEET 6 C 6 MET A 576 PRO A 581 -1 N GLY A 578 O MET A 611 SHEET 1 D 3 GLY A 309 LEU A 311 0 SHEET 2 D 3 GLY A 404 LEU A 406 -1 O GLY A 404 N LEU A 311 SHEET 3 D 3 HIS A 346 ASP A 347 -1 N ASP A 347 O TRP A 405 SHEET 1 E 8 VAL A 378 VAL A 380 0 SHEET 2 E 8 GLY A 397 TYR A 400 -1 O THR A 399 N VAL A 378 SHEET 3 E 8 VAL A 351 LEU A 354 -1 N VAL A 351 O TYR A 400 SHEET 4 E 8 VAL A 498 CYS A 500 1 O VAL A 498 N THR A 352 SHEET 5 E 8 TYR A 504 LEU A 505 -1 O LEU A 505 N LEU A 499 SHEET 6 E 8 HIS A 514 GLY A 518 -1 O GLY A 518 N TYR A 504 SHEET 7 E 8 TYR A 477 PRO A 487 -1 N SER A 484 O ILE A 517 SHEET 8 E 8 HIS A 522 ARG A 523 -1 O HIS A 522 N ALA A 480 SHEET 1 F 8 VAL A 378 VAL A 380 0 SHEET 2 F 8 GLY A 397 TYR A 400 -1 O THR A 399 N VAL A 378 SHEET 3 F 8 VAL A 351 LEU A 354 -1 N VAL A 351 O TYR A 400 SHEET 4 F 8 VAL A 498 CYS A 500 1 O VAL A 498 N THR A 352 SHEET 5 F 8 TYR A 504 LEU A 505 -1 O LEU A 505 N LEU A 499 SHEET 6 F 8 HIS A 514 GLY A 518 -1 O GLY A 518 N TYR A 504 SHEET 7 F 8 TYR A 477 PRO A 487 -1 N SER A 484 O ILE A 517 SHEET 8 F 8 ALA A 562 ALA A 569 -1 O ALA A 569 N TYR A 477 SHEET 1 G 3 LEU A 432 LYS A 438 0 SHEET 2 G 3 CYS A 441 PHE A 446 -1 O ASN A 445 N ASN A 434 SHEET 3 G 3 GLN A 451 HIS A 454 -1 O ALA A 452 N LEU A 444 CISPEP 1 GLY A 518 ALA A 519 0 -7.88 SITE 1 AC1 39 ILE A 270 GLY A 271 GLY A 272 GLY A 273 SITE 2 AC1 39 ILE A 274 ALA A 275 CYS A 294 ALA A 295 SITE 3 AC1 39 ASP A 296 ALA A 303 SER A 304 ASN A 306 SITE 4 AC1 39 ALA A 310 TYR A 430 GLN A 431 LEU A 432 SITE 5 AC1 39 ASN A 461 GLY A 462 GLN A 464 GLY A 481 SITE 6 AC1 39 VAL A 483 TYR A 504 GLY A 565 LEU A 615 SITE 7 AC1 39 GLY A 616 SER A 617 ARG A 618 GLY A 619 SITE 8 AC1 39 LEU A 620 CL A 671 HOH A 702 HOH A 705 SITE 9 AC1 39 HOH A 721 HOH A 795 HOH A 811 HOH A 815 SITE 10 AC1 39 HOH A 847 HOH A 854 HOH A 870 SITE 1 AC2 19 TYR A 28 GLU A 64 GLY A 66 PHE A 67 SITE 2 AC2 19 GLY A 68 THR A 69 LEU A 71 GLU A 101 SITE 3 AC2 19 LYS A 102 PHE A 103 GLY A 155 ASP A 156 SITE 4 AC2 19 ILE A 157 ASP A 178 GLY A 179 PHE A 180 SITE 5 AC2 19 HOH A 711 HOH A 718 HOH A 804 SITE 1 AC3 4 ASN A 306 GLY A 309 PRO A 408 FAD A 669 CRYST1 100.063 100.063 159.190 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006282 0.00000