HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 01-DEC-10 3PSL TITLE FINE-TUNING THE STIMULATION OF MLL1 METHYLTRANSFERASE ACTIVITY BY A TITLE 2 HISTONE H3 BASED PEPTIDE MIMETIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: WDR5 (UNP RESIDUES 21-334); COMPND 5 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: N-ALPHA ACETYLATED FORM OF HISTONE H3; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: N-ALPHA ACETYLATED FORM OF HISTONE H3 (SYNTHETIC) KEYWDS CHROMATIN, HISTONE, BETA-PROPELLER, SCAFFOLDING, RBBP5, MLL1, KEYWDS 2 NUCLEUS, TRANSCRIPTION - TRANSCRIPTION INHIBITOR COMPLEX, KEYWDS 3 TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.AVDIC,P.ZHANG,S.LANOUETTE,A.VORONOVA,I.SKERJANC,J.-F.COUTURE REVDAT 4 06-SEP-23 3PSL 1 SEQADV LINK REVDAT 3 24-AUG-11 3PSL 1 JRNL VERSN REVDAT 2 19-JAN-11 3PSL 1 JRNL REVDAT 1 22-DEC-10 3PSL 0 JRNL AUTH V.AVDIC,P.ZHANG,S.LANOUETTE,A.VORONOVA,I.SKERJANC, JRNL AUTH 2 J.F.COUTURE JRNL TITL FINE-TUNING THE STIMULATION OF MLL1 METHYLTRANSFERASE JRNL TITL 2 ACTIVITY BY A HISTONE H3-BASED PEPTIDE MIMETIC. JRNL REF FASEB J. V. 25 960 2011 JRNL REFN ISSN 0892-6638 JRNL PMID 21135039 JRNL DOI 10.1096/FJ.10-171959 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 47864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.835 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4774 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6468 ; 1.945 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 7.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;31.909 ;24.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;15.311 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3482 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2998 ; 1.294 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4831 ; 2.173 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1776 ; 3.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 5.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7751 17.7724 11.5123 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0408 REMARK 3 T33: 0.0416 T12: -0.0078 REMARK 3 T13: 0.0000 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6079 L22: 0.5292 REMARK 3 L33: 0.2180 L12: -0.1961 REMARK 3 L13: 0.1634 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0207 S13: 0.0385 REMARK 3 S21: -0.0266 S22: 0.0091 S23: -0.0262 REMARK 3 S31: 0.0081 S32: -0.0082 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7443 3.9544 43.0744 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0474 REMARK 3 T33: 0.0021 T12: 0.0188 REMARK 3 T13: 0.0099 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5262 L22: 1.2538 REMARK 3 L33: 0.5077 L12: 0.1781 REMARK 3 L13: -0.2157 L23: 0.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.0642 S13: 0.0045 REMARK 3 S21: 0.2413 S22: 0.1123 S23: 0.0366 REMARK 3 S31: 0.1111 S32: 0.0871 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8272 15.9348 21.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.0494 T22: 0.0814 REMARK 3 T33: 0.0707 T12: 0.0027 REMARK 3 T13: -0.0252 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.9797 L22: 2.3663 REMARK 3 L33: 3.4635 L12: -1.4463 REMARK 3 L13: -2.5522 L23: 2.6930 REMARK 3 S TENSOR REMARK 3 S11: 0.1064 S12: -0.1222 S13: -0.0115 REMARK 3 S21: 0.0946 S22: -0.1333 S23: -0.0243 REMARK 3 S31: 0.0357 S32: -0.0917 S33: 0.0269 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 4 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3939 6.8769 32.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.0479 REMARK 3 T33: 0.0488 T12: -0.0058 REMARK 3 T13: -0.0037 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.0985 L22: 4.2579 REMARK 3 L33: 2.9485 L12: -0.6338 REMARK 3 L13: 2.9680 L23: -0.8459 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0366 S13: -0.0511 REMARK 3 S21: -0.1187 S22: 0.0457 S23: 0.1269 REMARK 3 S31: -0.0519 S32: -0.0242 S33: -0.0287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.023 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23200 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2H14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NAACETATE, 100 MM NH4 SO4 , AND REMARK 280 20% PEG4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 ILE A 210 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 ILE B 210 REMARK 465 ASP B 211 REMARK 465 ASP B 212 REMARK 465 ASP B 213 REMARK 465 ASN B 214 REMARK 465 GLN C 5 REMARK 465 GLN D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 78 CD CE NZ REMARK 470 SER A 244 OG REMARK 470 LYS A 245 CE NZ REMARK 470 LYS A 247 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 78 CD CE NZ REMARK 470 SER B 244 OG REMARK 470 LYS B 245 CE NZ REMARK 470 LYS B 247 CE NZ REMARK 470 LYS C 4 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 357 O HOH A 495 1.69 REMARK 500 O HOH A 398 O HOH A 416 1.72 REMARK 500 O HOH B 404 O HOH B 415 1.77 REMARK 500 O HOH A 440 O HOH B 3 1.88 REMARK 500 O HOH A 351 O HOH A 440 1.88 REMARK 500 O HOH B 358 O HOH B 415 1.90 REMARK 500 O HOH A 351 O HOH B 3 1.91 REMARK 500 OE1 GLN B 140 O HOH B 357 1.94 REMARK 500 OE1 GLU A 292 O HOH A 497 2.09 REMARK 500 O HOH A 518 O HOH B 336 2.15 REMARK 500 O HOH A 430 O HOH B 408 2.16 REMARK 500 O HOH A 379 O HOH A 413 2.17 REMARK 500 O HOH A 427 O HOH A 517 2.18 REMARK 500 OE1 GLU B 80 O HOH B 421 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 322 CD GLU A 322 OE1 0.072 REMARK 500 ACE C 0 C ALA C 1 N 0.148 REMARK 500 ACE D 0 C ALA D 1 N 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 41 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 282 CB - CG - CD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 18.49 57.85 REMARK 500 LEU A 234 37.76 -81.96 REMARK 500 ASP A 324 -63.26 -127.67 REMARK 500 ASN B 56 1.35 -66.38 REMARK 500 LYS B 67 1.69 83.80 REMARK 500 LYS B 109 7.22 80.91 REMARK 500 PRO B 168 64.28 -68.76 REMARK 500 TYR B 191 -9.97 -58.85 REMARK 500 LEU B 234 45.80 -80.02 REMARK 500 LEU B 321 -159.54 -84.01 REMARK 500 ASP B 324 -68.85 -123.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF N-ALPHA ACETYLATED REMARK 800 FORM OF HISTONE H3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF N-ALPHA ACETYLATED REMARK 800 FORM OF HISTONE H3 DBREF 3PSL A 21 334 UNP P61964 WDR5_HUMAN 21 334 DBREF 3PSL B 21 334 UNP P61964 WDR5_HUMAN 21 334 DBREF 3PSL C 0 5 PDB 3PSL 3PSL 0 5 DBREF 3PSL D 0 5 PDB 3PSL 3PSL 0 5 SEQADV 3PSL GLY A 17 UNP P61964 EXPRESSION TAG SEQADV 3PSL ALA A 18 UNP P61964 EXPRESSION TAG SEQADV 3PSL MET A 19 UNP P61964 EXPRESSION TAG SEQADV 3PSL GLY A 20 UNP P61964 EXPRESSION TAG SEQADV 3PSL GLY B 17 UNP P61964 EXPRESSION TAG SEQADV 3PSL ALA B 18 UNP P61964 EXPRESSION TAG SEQADV 3PSL MET B 19 UNP P61964 EXPRESSION TAG SEQADV 3PSL GLY B 20 UNP P61964 EXPRESSION TAG SEQRES 1 A 318 GLY ALA MET GLY SER SER ALA THR GLN SER LYS PRO THR SEQRES 2 A 318 PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA SEQRES 3 A 318 GLY HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO SEQRES 4 A 318 ASN GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU SEQRES 5 A 318 ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS SEQRES 6 A 318 THR ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA SEQRES 7 A 318 TRP SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP SEQRES 8 A 318 ASP LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS SEQRES 9 A 318 CYS LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE SEQRES 10 A 318 CYS CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER SEQRES 11 A 318 GLY SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS SEQRES 12 A 318 THR GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP SEQRES 13 A 318 PRO VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU SEQRES 14 A 318 ILE VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP SEQRES 15 A 318 ASP THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP SEQRES 16 A 318 ASP ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO SEQRES 17 A 318 ASN GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR SEQRES 18 A 318 LEU LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS SEQRES 19 A 318 THR TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE SEQRES 20 A 318 ALA ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER SEQRES 21 A 318 GLY SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN SEQRES 22 A 318 THR LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP SEQRES 23 A 318 VAL VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE SEQRES 24 A 318 ILE ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS SEQRES 25 A 318 LEU TRP LYS SER ASP CYS SEQRES 1 B 318 GLY ALA MET GLY SER SER ALA THR GLN SER LYS PRO THR SEQRES 2 B 318 PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA SEQRES 3 B 318 GLY HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO SEQRES 4 B 318 ASN GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU SEQRES 5 B 318 ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS SEQRES 6 B 318 THR ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA SEQRES 7 B 318 TRP SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP SEQRES 8 B 318 ASP LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS SEQRES 9 B 318 CYS LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE SEQRES 10 B 318 CYS CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER SEQRES 11 B 318 GLY SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS SEQRES 12 B 318 THR GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP SEQRES 13 B 318 PRO VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU SEQRES 14 B 318 ILE VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP SEQRES 15 B 318 ASP THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP SEQRES 16 B 318 ASP ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO SEQRES 17 B 318 ASN GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR SEQRES 18 B 318 LEU LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS SEQRES 19 B 318 THR TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE SEQRES 20 B 318 ALA ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER SEQRES 21 B 318 GLY SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN SEQRES 22 B 318 THR LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP SEQRES 23 B 318 VAL VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE SEQRES 24 B 318 ILE ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS SEQRES 25 B 318 LEU TRP LYS SER ASP CYS SEQRES 1 C 6 ACE ALA ARG THR LYS GLN SEQRES 1 D 6 ACE ALA ARG THR LYS GLN HET ACE C 0 3 HET ACE D 0 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 HOH *351(H2 O) SHEET 1 A 4 ALA A 36 LEU A 41 0 SHEET 2 A 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 A 4 ILE A 315 ALA A 320 -1 N SER A 318 O LYS A 328 SHEET 4 A 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 B 4 VAL A 48 PHE A 53 0 SHEET 2 B 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 B 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 B 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 C 4 ILE A 90 TRP A 95 0 SHEET 2 C 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 C 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 C 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 D 4 VAL A 132 PHE A 137 0 SHEET 2 D 4 LEU A 143 SER A 148 -1 O GLY A 147 N PHE A 133 SHEET 3 D 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 D 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 E 4 VAL A 174 PHE A 179 0 SHEET 2 E 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 E 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 E 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 F 4 VAL A 217 PHE A 222 0 SHEET 2 F 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 F 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 F 4 LYS A 247 THR A 253 -1 O TYR A 252 N LEU A 238 SHEET 1 G 4 ALA A 264 SER A 267 0 SHEET 2 G 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 G 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 G 4 ILE A 293 LEU A 297 -1 O LEU A 297 N VAL A 283 SHEET 1 H 4 ALA B 36 LEU B 41 0 SHEET 2 H 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 H 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 H 4 VAL B 304 CYS B 309 -1 N SER B 306 O ALA B 319 SHEET 1 I 4 VAL B 48 PHE B 53 0 SHEET 2 I 4 TRP B 59 SER B 64 -1 O SER B 63 N SER B 49 SHEET 3 I 4 LEU B 68 GLY B 73 -1 O LYS B 70 N SER B 62 SHEET 4 I 4 PHE B 79 SER B 84 -1 O ILE B 83 N ILE B 69 SHEET 1 J 4 ILE B 90 TRP B 95 0 SHEET 2 J 4 LEU B 101 SER B 106 -1 O VAL B 103 N ALA B 94 SHEET 3 J 4 THR B 110 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 J 4 CYS B 121 LYS B 126 -1 O LEU B 125 N LEU B 111 SHEET 1 K 4 VAL B 132 PHE B 137 0 SHEET 2 K 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 K 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 K 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 L 4 VAL B 174 PHE B 179 0 SHEET 2 L 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 L 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 L 4 CYS B 205 LEU B 209 -1 O LEU B 206 N ILE B 197 SHEET 1 M 4 VAL B 217 PHE B 222 0 SHEET 2 M 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 M 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 M 4 LYS B 247 TYR B 252 -1 O TYR B 252 N LEU B 238 SHEET 1 N 4 ALA B 264 SER B 267 0 SHEET 2 N 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 N 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 N 4 ILE B 293 LEU B 297 -1 O LEU B 297 N VAL B 283 LINK C ACE C 0 N ALA C 1 1555 1555 1.48 LINK C ACE D 0 N ALA D 1 1555 1555 1.53 SITE 1 AC1 18 HOH A 13 ALA A 47 VAL A 48 SER A 49 SITE 2 AC1 18 GLY A 89 ILE A 90 SER A 91 ASP A 107 SITE 3 AC1 18 TYR A 131 PHE A 133 CYS A 261 PHE A 263 SITE 4 AC1 18 GLU A 322 HOH A 368 HOH B 407 HOH C 11 SITE 5 AC1 18 HOH C 74 HOH C 157 SITE 1 AC2 22 GLU A 151 HIS A 170 HOH B 9 ALA B 47 SITE 2 AC2 22 SER B 49 GLY B 89 ILE B 90 SER B 91 SITE 3 AC2 22 ASP B 107 TYR B 131 PHE B 133 TYR B 260 SITE 4 AC2 22 CYS B 261 PHE B 263 HOH B 336 HOH B 349 SITE 5 AC2 22 HOH B 363 HOH B 454 HOH D 12 HOH D 64 SITE 6 AC2 22 HOH D 68 HOH D 479 CRYST1 45.947 48.614 63.308 98.79 90.95 117.48 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021764 0.011318 0.002448 0.00000 SCALE2 0.000000 0.023185 0.004264 0.00000 SCALE3 0.000000 0.000000 0.016063 0.00000