data_3PT3 # _entry.id 3PT3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PT3 pdb_00003pt3 10.2210/pdb3pt3/pdb RCSB RCSB062782 ? ? WWPDB D_1000062782 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PT3 _pdbx_database_status.recvd_initial_deposition_date 2010-12-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matta-Camacho, E.' 1 'Kozlov, G.' 2 'Menade, M.' 3 'Gehring, K.' 4 # _citation.id primary _citation.title 'Structure of the HECT C-lobe of the UBR5 E3 ubiquitin ligase.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 68 _citation.page_first 1158 _citation.page_last 1163 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23027739 _citation.pdbx_database_id_DOI 10.1107/S1744309112036937 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matta-Camacho, E.' 1 ? primary 'Kozlov, G.' 2 ? primary 'Menade, M.' 3 ? primary 'Gehring, K.' 4 ? # _cell.entry_id 3PT3 _cell.length_a 29.240 _cell.length_b 39.070 _cell.length_c 44.170 _cell.angle_alpha 90.04 _cell.angle_beta 84.59 _cell.angle_gamma 81.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PT3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase UBR5' 13518.530 2 6.3.2.- ? 'C-terminal lobe of HECT domain' ? 2 water nat water 18.015 77 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'E3 ubiquitin-protein ligase, HECT domain-containing 1, Hyperplastic discs protein homolog, hHYD, Progestin-induced protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQH LPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQH LPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 VAL n 1 7 GLN n 1 8 MET n 1 9 LEU n 1 10 ILE n 1 11 SER n 1 12 PHE n 1 13 THR n 1 14 SER n 1 15 PHE n 1 16 ASN n 1 17 ASP n 1 18 GLU n 1 19 SER n 1 20 GLY n 1 21 GLU n 1 22 ASN n 1 23 ALA n 1 24 GLU n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 GLN n 1 29 PHE n 1 30 LYS n 1 31 ARG n 1 32 TRP n 1 33 PHE n 1 34 TRP n 1 35 SER n 1 36 ILE n 1 37 VAL n 1 38 GLU n 1 39 LYS n 1 40 MET n 1 41 SER n 1 42 MET n 1 43 THR n 1 44 GLU n 1 45 ARG n 1 46 GLN n 1 47 ASP n 1 48 LEU n 1 49 VAL n 1 50 TYR n 1 51 PHE n 1 52 TRP n 1 53 THR n 1 54 SER n 1 55 SER n 1 56 PRO n 1 57 SER n 1 58 LEU n 1 59 PRO n 1 60 ALA n 1 61 SER n 1 62 GLU n 1 63 GLU n 1 64 GLY n 1 65 PHE n 1 66 GLN n 1 67 PRO n 1 68 MET n 1 69 PRO n 1 70 SER n 1 71 ILE n 1 72 THR n 1 73 ILE n 1 74 ARG n 1 75 PRO n 1 76 PRO n 1 77 ASP n 1 78 ASP n 1 79 GLN n 1 80 HIS n 1 81 LEU n 1 82 PRO n 1 83 THR n 1 84 ALA n 1 85 ASN n 1 86 THR n 1 87 CYS n 1 88 ILE n 1 89 SER n 1 90 ARG n 1 91 LEU n 1 92 TYR n 1 93 VAL n 1 94 PRO n 1 95 LEU n 1 96 TYR n 1 97 SER n 1 98 SER n 1 99 LYS n 1 100 GLN n 1 101 ILE n 1 102 LEU n 1 103 LYS n 1 104 GLN n 1 105 LYS n 1 106 LEU n 1 107 LEU n 1 108 LEU n 1 109 ALA n 1 110 ILE n 1 111 LYS n 1 112 THR n 1 113 LYS n 1 114 ASN n 1 115 PHE n 1 116 GLY n 1 117 PHE n 1 118 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UBR5, EDD, EDD1, HYD, KIAA0896' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBR5_HUMAN _struct_ref.pdbx_db_accession O95071 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN TCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV ; _struct_ref.pdbx_align_begin 2687 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PT3 A 6 ? 118 ? O95071 2687 ? 2799 ? 2687 2799 2 1 3PT3 B 6 ? 118 ? O95071 2687 ? 2799 ? 2687 2799 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PT3 GLY A 1 ? UNP O95071 ? ? 'expression tag' 2682 1 1 3PT3 PRO A 2 ? UNP O95071 ? ? 'expression tag' 2683 2 1 3PT3 LEU A 3 ? UNP O95071 ? ? 'expression tag' 2684 3 1 3PT3 GLY A 4 ? UNP O95071 ? ? 'expression tag' 2685 4 1 3PT3 SER A 5 ? UNP O95071 ? ? 'expression tag' 2686 5 2 3PT3 GLY B 1 ? UNP O95071 ? ? 'expression tag' 2682 6 2 3PT3 PRO B 2 ? UNP O95071 ? ? 'expression tag' 2683 7 2 3PT3 LEU B 3 ? UNP O95071 ? ? 'expression tag' 2684 8 2 3PT3 GLY B 4 ? UNP O95071 ? ? 'expression tag' 2685 9 2 3PT3 SER B 5 ? UNP O95071 ? ? 'expression tag' 2686 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PT3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_percent_sol 33.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris, 0.2M NaCl, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2010-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9779 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength 0.9779 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3PT3 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.97 _reflns.number_obs 11665 _reflns.number_all 12853 _reflns.percent_possible_obs 90.76 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.01 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3PT3 _refine.ls_number_reflns_obs 11665 _refine.ls_number_reflns_all 12853 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.11 _refine.ls_d_res_high 1.97 _refine.ls_percent_reflns_obs 90.76 _refine.ls_R_factor_obs 0.22209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21920 _refine.ls_R_factor_R_free 0.27619 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 627 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 21.736 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] 0.11 _refine.aniso_B[3][3] -0.08 _refine.aniso_B[1][2] -0.06 _refine.aniso_B[1][3] 0.12 _refine.aniso_B[2][3] 0.05 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1c4z _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.211 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 9.001 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1502 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1579 _refine_hist.d_res_high 1.97 _refine_hist.d_res_low 23.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1546 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.296 1.960 ? 2099 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.444 5.000 ? 185 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.587 24.154 ? 65 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.110 15.000 ? 278 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.614 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 238 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1132 'X-RAY DIFFRACTION' ? r_nbd_refined 0.197 0.200 ? 639 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 1045 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.135 0.200 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.168 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.190 0.200 ? 8 'X-RAY DIFFRACTION' ? r_mcbond_it 0.514 1.500 ? 982 'X-RAY DIFFRACTION' ? r_mcangle_it 0.860 2.000 ? 1529 'X-RAY DIFFRACTION' ? r_scbond_it 1.414 3.000 ? 683 'X-RAY DIFFRACTION' ? r_scangle_it 2.173 4.500 ? 568 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.973 _refine_ls_shell.d_res_low 2.024 _refine_ls_shell.number_reflns_R_work 761 _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs 82.21 _refine_ls_shell.R_factor_R_free 0.249 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PT3 _struct.title 'Crystal structure of the C-terminal lobe of the human UBR5 HECT domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PT3 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'UBR5, EDD, hHYD, mixed alpha-beta fold, ubiquitin ligase, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_biol.id _struct_biol.details 1 A 2 B # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 22 ? MET A 40 ? ASN A 2703 MET A 2721 1 ? 19 HELX_P HELX_P2 2 SER A 41 ? SER A 54 ? SER A 2722 SER A 2735 1 ? 14 HELX_P HELX_P3 3 SER A 98 ? LYS A 111 ? SER A 2779 LYS A 2792 1 ? 14 HELX_P HELX_P4 4 SER B 5 ? THR B 13 ? SER B 2686 THR B 2694 1 ? 9 HELX_P HELX_P5 5 ASN B 22 ? MET B 40 ? ASN B 2703 MET B 2721 1 ? 19 HELX_P HELX_P6 6 SER B 41 ? SER B 54 ? SER B 2722 SER B 2735 1 ? 14 HELX_P HELX_P7 7 THR B 86 ? ILE B 88 ? THR B 2767 ILE B 2769 5 ? 3 HELX_P HELX_P8 8 SER B 98 ? LYS B 111 ? SER B 2779 LYS B 2792 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 14 ? ASP A 17 ? SER A 2695 ASP A 2698 A 2 SER A 70 ? ARG A 74 ? SER A 2751 ARG A 2755 A 3 ARG A 90 ? PRO A 94 ? ARG A 2771 PRO A 2775 A 4 THR A 83 ? ASN A 85 ? THR A 2764 ASN A 2766 B 1 SER B 14 ? ASP B 17 ? SER B 2695 ASP B 2698 B 2 SER B 70 ? ARG B 74 ? SER B 2751 ARG B 2755 B 3 ARG B 90 ? PRO B 94 ? ARG B 2771 PRO B 2775 B 4 THR B 83 ? ASN B 85 ? THR B 2764 ASN B 2766 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 16 ? N ASN A 2697 O ILE A 71 ? O ILE A 2752 A 2 3 N THR A 72 ? N THR A 2753 O LEU A 91 ? O LEU A 2772 A 3 4 O TYR A 92 ? O TYR A 2773 N THR A 83 ? N THR A 2764 B 1 2 N ASN B 16 ? N ASN B 2697 O ILE B 71 ? O ILE B 2752 B 2 3 N THR B 72 ? N THR B 2753 O LEU B 91 ? O LEU B 2772 B 3 4 O TYR B 92 ? O TYR B 2773 N THR B 83 ? N THR B 2764 # _database_PDB_matrix.entry_id 3PT3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PT3 _atom_sites.fract_transf_matrix[1][1] 0.034200 _atom_sites.fract_transf_matrix[1][2] -0.004947 _atom_sites.fract_transf_matrix[1][3] -0.003310 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025861 _atom_sites.fract_transf_matrix[2][3] 0.000373 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022743 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2682 ? ? ? A . n A 1 2 PRO 2 2683 ? ? ? A . n A 1 3 LEU 3 2684 ? ? ? A . n A 1 4 GLY 4 2685 ? ? ? A . n A 1 5 SER 5 2686 ? ? ? A . n A 1 6 VAL 6 2687 ? ? ? A . n A 1 7 GLN 7 2688 ? ? ? A . n A 1 8 MET 8 2689 ? ? ? A . n A 1 9 LEU 9 2690 ? ? ? A . n A 1 10 ILE 10 2691 ? ? ? A . n A 1 11 SER 11 2692 ? ? ? A . n A 1 12 PHE 12 2693 2693 PHE ALA A . n A 1 13 THR 13 2694 2694 THR THR A . n A 1 14 SER 14 2695 2695 SER SER A . n A 1 15 PHE 15 2696 2696 PHE PHE A . n A 1 16 ASN 16 2697 2697 ASN ASN A . n A 1 17 ASP 17 2698 2698 ASP ASP A . n A 1 18 GLU 18 2699 2699 GLU GLU A . n A 1 19 SER 19 2700 2700 SER SER A . n A 1 20 GLY 20 2701 2701 GLY GLY A . n A 1 21 GLU 21 2702 2702 GLU GLU A . n A 1 22 ASN 22 2703 2703 ASN ASN A . n A 1 23 ALA 23 2704 2704 ALA ALA A . n A 1 24 GLU 24 2705 2705 GLU GLU A . n A 1 25 LYS 25 2706 2706 LYS LYS A . n A 1 26 LEU 26 2707 2707 LEU LEU A . n A 1 27 LEU 27 2708 2708 LEU LEU A . n A 1 28 GLN 28 2709 2709 GLN GLN A . n A 1 29 PHE 29 2710 2710 PHE PHE A . n A 1 30 LYS 30 2711 2711 LYS LYS A . n A 1 31 ARG 31 2712 2712 ARG ARG A . n A 1 32 TRP 32 2713 2713 TRP TRP A . n A 1 33 PHE 33 2714 2714 PHE PHE A . n A 1 34 TRP 34 2715 2715 TRP TRP A . n A 1 35 SER 35 2716 2716 SER SER A . n A 1 36 ILE 36 2717 2717 ILE ILE A . n A 1 37 VAL 37 2718 2718 VAL VAL A . n A 1 38 GLU 38 2719 2719 GLU GLU A . n A 1 39 LYS 39 2720 2720 LYS LYS A . n A 1 40 MET 40 2721 2721 MET MET A . n A 1 41 SER 41 2722 2722 SER SER A . n A 1 42 MET 42 2723 2723 MET MET A . n A 1 43 THR 43 2724 2724 THR THR A . n A 1 44 GLU 44 2725 2725 GLU GLU A . n A 1 45 ARG 45 2726 2726 ARG ARG A . n A 1 46 GLN 46 2727 2727 GLN GLN A . n A 1 47 ASP 47 2728 2728 ASP ASP A . n A 1 48 LEU 48 2729 2729 LEU LEU A . n A 1 49 VAL 49 2730 2730 VAL VAL A . n A 1 50 TYR 50 2731 2731 TYR TYR A . n A 1 51 PHE 51 2732 2732 PHE PHE A . n A 1 52 TRP 52 2733 2733 TRP TRP A . n A 1 53 THR 53 2734 2734 THR THR A . n A 1 54 SER 54 2735 2735 SER SER A . n A 1 55 SER 55 2736 2736 SER SER A . n A 1 56 PRO 56 2737 2737 PRO PRO A . n A 1 57 SER 57 2738 ? ? ? A . n A 1 58 LEU 58 2739 ? ? ? A . n A 1 59 PRO 59 2740 ? ? ? A . n A 1 60 ALA 60 2741 ? ? ? A . n A 1 61 SER 61 2742 ? ? ? A . n A 1 62 GLU 62 2743 ? ? ? A . n A 1 63 GLU 63 2744 ? ? ? A . n A 1 64 GLY 64 2745 ? ? ? A . n A 1 65 PHE 65 2746 ? ? ? A . n A 1 66 GLN 66 2747 ? ? ? A . n A 1 67 PRO 67 2748 ? ? ? A . n A 1 68 MET 68 2749 ? ? ? A . n A 1 69 PRO 69 2750 2750 PRO PRO A . n A 1 70 SER 70 2751 2751 SER SER A . n A 1 71 ILE 71 2752 2752 ILE ILE A . n A 1 72 THR 72 2753 2753 THR THR A . n A 1 73 ILE 73 2754 2754 ILE ILE A . n A 1 74 ARG 74 2755 2755 ARG ARG A . n A 1 75 PRO 75 2756 2756 PRO PRO A . n A 1 76 PRO 76 2757 2757 PRO PRO A . n A 1 77 ASP 77 2758 2758 ASP ASP A . n A 1 78 ASP 78 2759 2759 ASP ASP A . n A 1 79 GLN 79 2760 2760 GLN GLN A . n A 1 80 HIS 80 2761 2761 HIS HIS A . n A 1 81 LEU 81 2762 2762 LEU LEU A . n A 1 82 PRO 82 2763 2763 PRO PRO A . n A 1 83 THR 83 2764 2764 THR THR A . n A 1 84 ALA 84 2765 2765 ALA ALA A . n A 1 85 ASN 85 2766 2766 ASN ASN A . n A 1 86 THR 86 2767 2767 THR THR A . n A 1 87 CYS 87 2768 2768 CYS CYS A . n A 1 88 ILE 88 2769 2769 ILE ILE A . n A 1 89 SER 89 2770 2770 SER SER A . n A 1 90 ARG 90 2771 2771 ARG ARG A . n A 1 91 LEU 91 2772 2772 LEU LEU A . n A 1 92 TYR 92 2773 2773 TYR TYR A . n A 1 93 VAL 93 2774 2774 VAL VAL A . n A 1 94 PRO 94 2775 2775 PRO PRO A . n A 1 95 LEU 95 2776 2776 LEU LEU A . n A 1 96 TYR 96 2777 2777 TYR TYR A . n A 1 97 SER 97 2778 2778 SER SER A . n A 1 98 SER 98 2779 2779 SER SER A . n A 1 99 LYS 99 2780 2780 LYS LYS A . n A 1 100 GLN 100 2781 2781 GLN GLN A . n A 1 101 ILE 101 2782 2782 ILE ILE A . n A 1 102 LEU 102 2783 2783 LEU LEU A . n A 1 103 LYS 103 2784 2784 LYS LYS A . n A 1 104 GLN 104 2785 2785 GLN GLN A . n A 1 105 LYS 105 2786 2786 LYS LYS A . n A 1 106 LEU 106 2787 2787 LEU LEU A . n A 1 107 LEU 107 2788 2788 LEU LEU A . n A 1 108 LEU 108 2789 2789 LEU LEU A . n A 1 109 ALA 109 2790 2790 ALA ALA A . n A 1 110 ILE 110 2791 2791 ILE ILE A . n A 1 111 LYS 111 2792 2792 LYS ALA A . n A 1 112 THR 112 2793 ? ? ? A . n A 1 113 LYS 113 2794 ? ? ? A . n A 1 114 ASN 114 2795 ? ? ? A . n A 1 115 PHE 115 2796 ? ? ? A . n A 1 116 GLY 116 2797 ? ? ? A . n A 1 117 PHE 117 2798 ? ? ? A . n A 1 118 VAL 118 2799 ? ? ? A . n B 1 1 GLY 1 2682 ? ? ? B . n B 1 2 PRO 2 2683 ? ? ? B . n B 1 3 LEU 3 2684 ? ? ? B . n B 1 4 GLY 4 2685 ? ? ? B . n B 1 5 SER 5 2686 2686 SER SER B . n B 1 6 VAL 6 2687 2687 VAL VAL B . n B 1 7 GLN 7 2688 2688 GLN GLN B . n B 1 8 MET 8 2689 2689 MET ALA B . n B 1 9 LEU 9 2690 2690 LEU LEU B . n B 1 10 ILE 10 2691 2691 ILE ILE B . n B 1 11 SER 11 2692 2692 SER SER B . n B 1 12 PHE 12 2693 2693 PHE ALA B . n B 1 13 THR 13 2694 2694 THR THR B . n B 1 14 SER 14 2695 2695 SER SER B . n B 1 15 PHE 15 2696 2696 PHE PHE B . n B 1 16 ASN 16 2697 2697 ASN ASN B . n B 1 17 ASP 17 2698 2698 ASP ASP B . n B 1 18 GLU 18 2699 2699 GLU GLU B . n B 1 19 SER 19 2700 2700 SER SER B . n B 1 20 GLY 20 2701 2701 GLY GLY B . n B 1 21 GLU 21 2702 2702 GLU GLU B . n B 1 22 ASN 22 2703 2703 ASN ASN B . n B 1 23 ALA 23 2704 2704 ALA ALA B . n B 1 24 GLU 24 2705 2705 GLU GLU B . n B 1 25 LYS 25 2706 2706 LYS LYS B . n B 1 26 LEU 26 2707 2707 LEU LEU B . n B 1 27 LEU 27 2708 2708 LEU LEU B . n B 1 28 GLN 28 2709 2709 GLN GLN B . n B 1 29 PHE 29 2710 2710 PHE PHE B . n B 1 30 LYS 30 2711 2711 LYS LYS B . n B 1 31 ARG 31 2712 2712 ARG ARG B . n B 1 32 TRP 32 2713 2713 TRP TRP B . n B 1 33 PHE 33 2714 2714 PHE PHE B . n B 1 34 TRP 34 2715 2715 TRP TRP B . n B 1 35 SER 35 2716 2716 SER SER B . n B 1 36 ILE 36 2717 2717 ILE ILE B . n B 1 37 VAL 37 2718 2718 VAL VAL B . n B 1 38 GLU 38 2719 2719 GLU GLU B . n B 1 39 LYS 39 2720 2720 LYS LYS B . n B 1 40 MET 40 2721 2721 MET MET B . n B 1 41 SER 41 2722 2722 SER SER B . n B 1 42 MET 42 2723 2723 MET MET B . n B 1 43 THR 43 2724 2724 THR THR B . n B 1 44 GLU 44 2725 2725 GLU GLU B . n B 1 45 ARG 45 2726 2726 ARG ARG B . n B 1 46 GLN 46 2727 2727 GLN GLN B . n B 1 47 ASP 47 2728 2728 ASP ASP B . n B 1 48 LEU 48 2729 2729 LEU LEU B . n B 1 49 VAL 49 2730 2730 VAL VAL B . n B 1 50 TYR 50 2731 2731 TYR TYR B . n B 1 51 PHE 51 2732 2732 PHE PHE B . n B 1 52 TRP 52 2733 2733 TRP TRP B . n B 1 53 THR 53 2734 2734 THR THR B . n B 1 54 SER 54 2735 2735 SER SER B . n B 1 55 SER 55 2736 2736 SER SER B . n B 1 56 PRO 56 2737 2737 PRO PRO B . n B 1 57 SER 57 2738 ? ? ? B . n B 1 58 LEU 58 2739 ? ? ? B . n B 1 59 PRO 59 2740 ? ? ? B . n B 1 60 ALA 60 2741 ? ? ? B . n B 1 61 SER 61 2742 ? ? ? B . n B 1 62 GLU 62 2743 ? ? ? B . n B 1 63 GLU 63 2744 ? ? ? B . n B 1 64 GLY 64 2745 ? ? ? B . n B 1 65 PHE 65 2746 ? ? ? B . n B 1 66 GLN 66 2747 ? ? ? B . n B 1 67 PRO 67 2748 2748 PRO PRO B . n B 1 68 MET 68 2749 2749 MET MET B . n B 1 69 PRO 69 2750 2750 PRO PRO B . n B 1 70 SER 70 2751 2751 SER SER B . n B 1 71 ILE 71 2752 2752 ILE ILE B . n B 1 72 THR 72 2753 2753 THR THR B . n B 1 73 ILE 73 2754 2754 ILE ILE B . n B 1 74 ARG 74 2755 2755 ARG ARG B . n B 1 75 PRO 75 2756 2756 PRO PRO B . n B 1 76 PRO 76 2757 2757 PRO PRO B . n B 1 77 ASP 77 2758 2758 ASP ASP B . n B 1 78 ASP 78 2759 2759 ASP ASP B . n B 1 79 GLN 79 2760 2760 GLN GLN B . n B 1 80 HIS 80 2761 2761 HIS HIS B . n B 1 81 LEU 81 2762 2762 LEU LEU B . n B 1 82 PRO 82 2763 2763 PRO PRO B . n B 1 83 THR 83 2764 2764 THR THR B . n B 1 84 ALA 84 2765 2765 ALA ALA B . n B 1 85 ASN 85 2766 2766 ASN ASN B . n B 1 86 THR 86 2767 2767 THR THR B . n B 1 87 CYS 87 2768 2768 CYS CYS B . n B 1 88 ILE 88 2769 2769 ILE ILE B . n B 1 89 SER 89 2770 2770 SER SER B . n B 1 90 ARG 90 2771 2771 ARG ARG B . n B 1 91 LEU 91 2772 2772 LEU LEU B . n B 1 92 TYR 92 2773 2773 TYR TYR B . n B 1 93 VAL 93 2774 2774 VAL VAL B . n B 1 94 PRO 94 2775 2775 PRO PRO B . n B 1 95 LEU 95 2776 2776 LEU LEU B . n B 1 96 TYR 96 2777 2777 TYR TYR B . n B 1 97 SER 97 2778 2778 SER SER B . n B 1 98 SER 98 2779 2779 SER SER B . n B 1 99 LYS 99 2780 2780 LYS LYS B . n B 1 100 GLN 100 2781 2781 GLN GLN B . n B 1 101 ILE 101 2782 2782 ILE ILE B . n B 1 102 LEU 102 2783 2783 LEU LEU B . n B 1 103 LYS 103 2784 2784 LYS LYS B . n B 1 104 GLN 104 2785 2785 GLN GLN B . n B 1 105 LYS 105 2786 2786 LYS LYS B . n B 1 106 LEU 106 2787 2787 LEU LEU B . n B 1 107 LEU 107 2788 2788 LEU LEU B . n B 1 108 LEU 108 2789 2789 LEU LEU B . n B 1 109 ALA 109 2790 2790 ALA ALA B . n B 1 110 ILE 110 2791 2791 ILE ILE B . n B 1 111 LYS 111 2792 2792 LYS ALA B . n B 1 112 THR 112 2793 ? ? ? B . n B 1 113 LYS 113 2794 ? ? ? B . n B 1 114 ASN 114 2795 ? ? ? B . n B 1 115 PHE 115 2796 ? ? ? B . n B 1 116 GLY 116 2797 ? ? ? B . n B 1 117 PHE 117 2798 ? ? ? B . n B 1 118 VAL 118 2799 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2 2 HOH HOH A . C 2 HOH 2 4 4 HOH HOH A . C 2 HOH 3 5 5 HOH HOH A . C 2 HOH 4 6 6 HOH HOH A . C 2 HOH 5 7 7 HOH HOH A . C 2 HOH 6 10 10 HOH HOH A . C 2 HOH 7 14 14 HOH HOH A . C 2 HOH 8 16 16 HOH HOH A . C 2 HOH 9 18 18 HOH HOH A . C 2 HOH 10 19 19 HOH HOH A . C 2 HOH 11 24 24 HOH HOH A . C 2 HOH 12 26 26 HOH HOH A . C 2 HOH 13 29 29 HOH HOH A . C 2 HOH 14 31 31 HOH HOH A . C 2 HOH 15 34 34 HOH HOH A . C 2 HOH 16 38 38 HOH HOH A . C 2 HOH 17 41 41 HOH HOH A . C 2 HOH 18 42 42 HOH HOH A . C 2 HOH 19 45 45 HOH HOH A . C 2 HOH 20 51 51 HOH HOH A . C 2 HOH 21 55 55 HOH HOH A . C 2 HOH 22 62 62 HOH HOH A . C 2 HOH 23 65 65 HOH HOH A . C 2 HOH 24 68 68 HOH HOH A . C 2 HOH 25 75 75 HOH HOH A . C 2 HOH 26 77 77 HOH HOH A . C 2 HOH 27 78 78 HOH HOH A . C 2 HOH 28 79 79 HOH HOH A . C 2 HOH 29 80 80 HOH HOH A . C 2 HOH 30 81 81 HOH HOH A . C 2 HOH 31 82 82 HOH HOH A . C 2 HOH 32 83 83 HOH HOH A . C 2 HOH 33 84 84 HOH HOH A . C 2 HOH 34 87 87 HOH HOH A . C 2 HOH 35 88 88 HOH HOH A . C 2 HOH 36 101 101 HOH HOH A . D 2 HOH 1 1 1 HOH HOH B . D 2 HOH 2 3 3 HOH HOH B . D 2 HOH 3 11 11 HOH HOH B . D 2 HOH 4 12 12 HOH HOH B . D 2 HOH 5 13 13 HOH HOH B . D 2 HOH 6 15 15 HOH HOH B . D 2 HOH 7 17 17 HOH HOH B . D 2 HOH 8 20 20 HOH HOH B . D 2 HOH 9 21 21 HOH HOH B . D 2 HOH 10 22 22 HOH HOH B . D 2 HOH 11 23 23 HOH HOH B . D 2 HOH 12 25 25 HOH HOH B . D 2 HOH 13 27 27 HOH HOH B . D 2 HOH 14 30 30 HOH HOH B . D 2 HOH 15 33 33 HOH HOH B . D 2 HOH 16 35 35 HOH HOH B . D 2 HOH 17 37 37 HOH HOH B . D 2 HOH 18 39 39 HOH HOH B . D 2 HOH 19 40 40 HOH HOH B . D 2 HOH 20 46 46 HOH HOH B . D 2 HOH 21 48 48 HOH HOH B . D 2 HOH 22 50 50 HOH HOH B . D 2 HOH 23 53 53 HOH HOH B . D 2 HOH 24 58 58 HOH HOH B . D 2 HOH 25 59 59 HOH HOH B . D 2 HOH 26 76 76 HOH HOH B . D 2 HOH 27 85 85 HOH HOH B . D 2 HOH 28 86 86 HOH HOH B . D 2 HOH 29 89 89 HOH HOH B . D 2 HOH 30 90 90 HOH HOH B . D 2 HOH 31 91 91 HOH HOH B . D 2 HOH 32 92 92 HOH HOH B . D 2 HOH 33 93 93 HOH HOH B . D 2 HOH 34 94 94 HOH HOH B . D 2 HOH 35 95 95 HOH HOH B . D 2 HOH 36 96 96 HOH HOH B . D 2 HOH 37 97 97 HOH HOH B . D 2 HOH 38 98 98 HOH HOH B . D 2 HOH 39 99 99 HOH HOH B . D 2 HOH 40 100 100 HOH HOH B . D 2 HOH 41 102 102 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-10-17 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -12.8120 -12.1285 -10.5271 -0.0259 0.0489 0.0698 -0.0017 0.0066 -0.0092 1.2471 1.5927 3.1274 -0.4649 0.3327 1.9528 0.0750 -0.0384 0.0207 0.0351 -0.2286 0.2553 0.1331 -0.3480 0.1536 'X-RAY DIFFRACTION' 2 ? refined -13.2895 -16.0397 -26.4134 0.0801 0.0229 0.0115 0.0397 -0.0342 0.0071 0.9286 5.0085 3.3517 0.7084 0.0825 2.4393 -0.0476 0.0968 0.1363 -0.2994 -0.2422 0.2991 -0.2531 -0.3803 0.2898 'X-RAY DIFFRACTION' 3 ? refined -5.9734 -18.3296 -16.7489 0.0396 0.0333 0.0293 0.0446 -0.0016 0.0110 2.4211 4.2805 3.8885 2.6412 1.1891 3.1525 0.0641 0.0386 -0.1237 -0.1872 -0.0247 -0.1373 0.0335 0.3260 -0.0394 'X-RAY DIFFRACTION' 4 ? refined -6.3543 -16.7282 -19.1653 0.0429 0.0472 0.0193 0.0074 0.0096 0.0010 1.8087 2.5829 2.2294 0.6702 0.5072 0.6602 0.0448 0.0573 0.0040 -0.1079 -0.0105 -0.0611 -0.0371 0.0134 -0.0342 'X-RAY DIFFRACTION' 5 ? refined -3.6850 -15.7814 -27.2760 0.0608 -0.0035 -0.0544 0.0236 0.0037 0.0647 7.1275 23.3429 27.6571 4.6404 2.4730 2.7375 0.1901 0.3897 -0.2613 -0.2989 -0.2892 -0.3451 -0.4433 0.2456 0.0991 'X-RAY DIFFRACTION' 6 ? refined 9.1946 1.7343 -6.1023 -0.0117 0.0641 0.0663 0.0016 0.0380 -0.0082 3.8138 3.1519 2.3426 -2.2064 2.0341 -1.2913 0.0270 0.0276 0.1739 -0.1414 -0.0626 -0.2504 0.0360 0.2236 0.0356 'X-RAY DIFFRACTION' 7 ? refined 9.0901 6.6164 1.5918 -0.0033 0.0260 0.0969 -0.0427 -0.0150 -0.0194 3.8692 4.2533 16.2484 -0.3715 -0.1190 -4.5398 0.0205 -0.0543 0.2648 0.2461 0.0593 -0.4918 -0.4523 0.3694 -0.0798 'X-RAY DIFFRACTION' 8 ? refined 3.2339 -2.9554 11.0107 0.0339 0.0185 0.0004 0.0269 -0.0257 0.0017 8.8535 15.6334 5.6969 8.0933 3.9849 4.7491 0.3338 -0.0581 -0.2840 1.0942 0.1365 -0.6232 0.0817 0.3755 -0.4703 'X-RAY DIFFRACTION' 9 ? refined -0.5140 -1.0818 -2.1617 0.0133 0.0643 0.0886 -0.0381 -0.0117 -0.0174 1.6047 5.2659 4.1234 -0.5505 -0.3174 -1.2709 0.0472 -0.0266 -0.1137 0.0443 -0.0486 0.1856 0.0175 -0.1030 0.0015 'X-RAY DIFFRACTION' 10 ? refined -0.8384 2.5715 0.7313 0.0048 0.0681 0.0649 0.0007 -0.0057 -0.0056 1.2839 4.4357 1.4709 -0.1856 -0.2293 0.3604 0.0097 -0.0801 0.0521 0.1164 0.0019 -0.0577 -0.0789 0.0536 -0.0117 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2693 ? ? A 2710 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 2711 ? ? A 2734 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 2735 ? ? A 2761 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 2762 ? ? A 2785 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 2786 ? ? A 2792 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 2786 ? ? B 2708 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 2709 ? ? B 2721 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 2722 ? ? B 2732 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 2733 ? ? B 2763 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 2764 ? ? B 2792 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 2758 ? ? -160.42 95.01 2 1 ASP B 2758 ? ? -163.48 101.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 2693 ? CG ? A PHE 12 CG 2 1 Y 1 A PHE 2693 ? CD1 ? A PHE 12 CD1 3 1 Y 1 A PHE 2693 ? CD2 ? A PHE 12 CD2 4 1 Y 1 A PHE 2693 ? CE1 ? A PHE 12 CE1 5 1 Y 1 A PHE 2693 ? CE2 ? A PHE 12 CE2 6 1 Y 1 A PHE 2693 ? CZ ? A PHE 12 CZ 7 1 Y 1 A LYS 2792 ? CG ? A LYS 111 CG 8 1 Y 1 A LYS 2792 ? CD ? A LYS 111 CD 9 1 Y 1 A LYS 2792 ? CE ? A LYS 111 CE 10 1 Y 1 A LYS 2792 ? NZ ? A LYS 111 NZ 11 1 Y 1 B MET 2689 ? CG ? B MET 8 CG 12 1 Y 1 B MET 2689 ? SD ? B MET 8 SD 13 1 Y 1 B MET 2689 ? CE ? B MET 8 CE 14 1 Y 1 B PHE 2693 ? CG ? B PHE 12 CG 15 1 Y 1 B PHE 2693 ? CD1 ? B PHE 12 CD1 16 1 Y 1 B PHE 2693 ? CD2 ? B PHE 12 CD2 17 1 Y 1 B PHE 2693 ? CE1 ? B PHE 12 CE1 18 1 Y 1 B PHE 2693 ? CE2 ? B PHE 12 CE2 19 1 Y 1 B PHE 2693 ? CZ ? B PHE 12 CZ 20 1 Y 1 B PRO 2748 ? CG ? B PRO 67 CG 21 1 Y 1 B PRO 2748 ? CD ? B PRO 67 CD 22 1 Y 1 B LYS 2792 ? CG ? B LYS 111 CG 23 1 Y 1 B LYS 2792 ? CD ? B LYS 111 CD 24 1 Y 1 B LYS 2792 ? CE ? B LYS 111 CE 25 1 Y 1 B LYS 2792 ? NZ ? B LYS 111 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 2682 ? A GLY 1 2 1 Y 1 A PRO 2683 ? A PRO 2 3 1 Y 1 A LEU 2684 ? A LEU 3 4 1 Y 1 A GLY 2685 ? A GLY 4 5 1 Y 1 A SER 2686 ? A SER 5 6 1 Y 1 A VAL 2687 ? A VAL 6 7 1 Y 1 A GLN 2688 ? A GLN 7 8 1 Y 1 A MET 2689 ? A MET 8 9 1 Y 1 A LEU 2690 ? A LEU 9 10 1 Y 1 A ILE 2691 ? A ILE 10 11 1 Y 1 A SER 2692 ? A SER 11 12 1 Y 1 A SER 2738 ? A SER 57 13 1 Y 1 A LEU 2739 ? A LEU 58 14 1 Y 1 A PRO 2740 ? A PRO 59 15 1 Y 1 A ALA 2741 ? A ALA 60 16 1 Y 1 A SER 2742 ? A SER 61 17 1 Y 1 A GLU 2743 ? A GLU 62 18 1 Y 1 A GLU 2744 ? A GLU 63 19 1 Y 1 A GLY 2745 ? A GLY 64 20 1 Y 1 A PHE 2746 ? A PHE 65 21 1 Y 1 A GLN 2747 ? A GLN 66 22 1 Y 1 A PRO 2748 ? A PRO 67 23 1 Y 1 A MET 2749 ? A MET 68 24 1 Y 1 A THR 2793 ? A THR 112 25 1 Y 1 A LYS 2794 ? A LYS 113 26 1 Y 1 A ASN 2795 ? A ASN 114 27 1 Y 1 A PHE 2796 ? A PHE 115 28 1 Y 1 A GLY 2797 ? A GLY 116 29 1 Y 1 A PHE 2798 ? A PHE 117 30 1 Y 1 A VAL 2799 ? A VAL 118 31 1 Y 1 B GLY 2682 ? B GLY 1 32 1 Y 1 B PRO 2683 ? B PRO 2 33 1 Y 1 B LEU 2684 ? B LEU 3 34 1 Y 1 B GLY 2685 ? B GLY 4 35 1 Y 1 B SER 2738 ? B SER 57 36 1 Y 1 B LEU 2739 ? B LEU 58 37 1 Y 1 B PRO 2740 ? B PRO 59 38 1 Y 1 B ALA 2741 ? B ALA 60 39 1 Y 1 B SER 2742 ? B SER 61 40 1 Y 1 B GLU 2743 ? B GLU 62 41 1 Y 1 B GLU 2744 ? B GLU 63 42 1 Y 1 B GLY 2745 ? B GLY 64 43 1 Y 1 B PHE 2746 ? B PHE 65 44 1 Y 1 B GLN 2747 ? B GLN 66 45 1 Y 1 B THR 2793 ? B THR 112 46 1 Y 1 B LYS 2794 ? B LYS 113 47 1 Y 1 B ASN 2795 ? B ASN 114 48 1 Y 1 B PHE 2796 ? B PHE 115 49 1 Y 1 B GLY 2797 ? B GLY 116 50 1 Y 1 B PHE 2798 ? B PHE 117 51 1 Y 1 B VAL 2799 ? B VAL 118 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1C4Z _pdbx_initial_refinement_model.details ? #