HEADER HYDROLASE (SERINE PROTEINASE) 19-DEC-77 3PTP OBSLTE 16-JUL-88 3PTP 4PTP TITLE THE ACCURACY OF REFINED PROTEIN STRUCTURES, COMPARISON OF TITLE 2 TWO INDEPENDENTLY REFINED MODELS OF BOVINE TRYPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS HYDROLASE (SERINE PROTEINASE) EXPDTA X-RAY DIFFRACTION AUTHOR J.L.CHAMBERS,R.M.STROUD REVDAT 10 16-JUL-88 3PTP 3 OBSLTE REVDAT 9 24-OCT-86 3PTP 1 REMARK REVDAT 8 31-MAY-84 3PTP 1 REMARK REVDAT 7 30-SEP-83 3PTP 1 REVDAT REVDAT 6 02-MAR-82 3PTP 1 REMARK REVDAT 5 20-APR-81 3PTP 1 SHEET TURN REVDAT 4 31-DEC-80 3PTP 1 REMARK REVDAT 3 01-OCT-80 3PTP 1 JRNL REMARK REVDAT 2 13-SEP-79 3PTP 1 JRNL REVDAT 1 27-MAR-78 3PTP 0 SPRSDE 27-MAR-78 3PTP 2PTP JRNL AUTH J.L.CHAMBERS,R.M.STROUD JRNL TITL THE ACCURACY OF REFINED PROTEIN STRUCTURES, JRNL TITL 2 COMPARISON OF TWO INDEPENDENTLY REFINED MODELS OF JRNL TITL 3 BOVINE TRYPSIN JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 35 1861 1979 JRNL REFN ASTM ACBCAR DK ISSN 0567-7408 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.CHAMBERS,R.M.STROUD REMARK 1 TITL DIFFERENCE-FOURIER REFINEMENT OF THE STRUCTURE OF REMARK 1 TITL 2 /DIP-TRYPSIN AT 1.5 ANGSTROMS USING A MINICOMPUTER REMARK 1 TITL 3 TECHNIQUE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 33 1824 1977 REMARK 1 REFN ASTM ACBCAR DK ISSN 0567-7408 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.M.STROUD,M.KRIEGER,R.E.KOEPPEII,A.A.KOSSIAKOFF, REMARK 1 AUTH 2 J.L.CHAMBERS REMARK 1 TITL STRUCTURE-FUNCTION RELATIONSHIPS IN THE SERINE REMARK 1 TITL 2 PROTEASES REMARK 1 EDIT E.REICH, D.B.RIFKIN, E.SHAW REMARK 1 REF PROTEASES AND BIOLOGICAL 13 1975 REMARK 1 REF 2 CONTROL REMARK 1 PUBL COLD SPRING HARBOR LAB.,COLD SPRING HARBOR,N.Y. REMARK 1 REFN ISBN 0-87969-144-X REMARK 1 REFERENCE 3 REMARK 1 AUTH J.L.CHAMBERS,G.G.CHRISTOPH,M.KRIEGER,L.KAY, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL SILVER ION INHIBITION OF SERINE PROTEASES, REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDY OF SILVER-TRYPSIN REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMM. V. 59 70 1974 REMARK 1 REFN ASTM BBRCA9 US ISSN 0006-291X REMARK 1 REFERENCE 4 REMARK 1 AUTH R.M.STROUD,L.M.KAY,R.E.DICKERSON REMARK 1 TITL THE STRUCTURE OF BOVINE TRYPSIN,ELECTRON DENSITY REMARK 1 TITL 2 MAPS OF THE INHIBITED ENZYME AT 5 ANGSTROMS AND AT REMARK 1 TITL 3 2.7 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 83 185 1974 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.KRIEGER,L.M.KAY,R.M.STROUD REMARK 1 TITL STRUCTURE AND SPECIFIC BINDING OF TRYPSIN, REMARK 1 TITL 2 COMPARISON OF INHIBITED DERIVATIVES AND A MODEL REMARK 1 TITL 3 FOR SUBSTRATE BINDING REMARK 1 REF J.MOL.BIOL. V. 83 209 1974 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH R.M.STROUD,L.M.KAY,R.E.DICKERSON REMARK 1 TITL THE CRYSTAL AND MOLECULAR STRUCTURE OF REMARK 1 TITL 2 /DIP-INHIBITED BOVINE TRYPSIN AT 2.7 ANGSTROMS REMARK 1 TITL 3 RESOLUTION REMARK 1 REF COLD SPRING HARBOR SYMP. V. 36 125 1972 REMARK 1 REF 2 QUANT.BIOL. REMARK 1 REFN ASTM CSHSAZ US ISSN 0091-7451 REMARK 1 REFERENCE 7 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 215 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL TRACOR JITCO INC.,ROCKVILLE,MD. REMARK 1 REFN ISBN 0-917934-01-6 REMARK 1 REFERENCE 8 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 105 1972 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER REMARK 1 PUBL 2 SPRING,MD. REMARK 1 REFN ISBN 0-912466-02-2 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PTP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 3PTP SITE *BIN* IS THE SPECIFIC BINDING POCKET. ASP-189 AT REMARK 5 THE 3PTP BOTTOM OF THIS POCKET FORMS AN H-BOND TO THE REMARK 5 POSITIVELY 3PTP CHARGED SIDE CHAIN OF A SPECIFIC SUBSTRATE, REMARK 5 GIVING TRYPSIN 3PTP ITS SPECIFICITY FOR THIS TYPE OF SIDE REMARK 5 CHAIN. THE BACKBONE 3PTP IN THE REGION FROM SER-214 TO CYS- REMARK 5 220 IS INVOLVED IN 3PTP HYDROGEN BONDING TO A PEPTIDE REMARK 5 SUBSTRATE. 3PTP REMARK 6 REMARK 6 3PTP SITE *ION* CONTAINS A TIGHTLY BOUND POSITIVE ION WHICH REMARK 6 IS 3PTP PROBABLY A CA2+ IN THIS STRUCTURE. THE ION IS GIVEN REMARK 6 3PTP SEQUENCE IDENTIFIER CA 45 AND OCCURS AMONG THE WATER REMARK 6 3PTP MOLECULES AT THE END OF THIS DATA ENTRY. THE ION IS REMARK 6 3PTP COORDINATED IN A ROUGHLY OCTAHEDRAL FASHION BY GLU 70, REMARK 6 3PTP ASN 72, VAL 75, GLU 80, HOH 53 AND HOH 54 AS SPECIFIED REMARK 6 3PTP IN THE CONECT RECORDS. THIS SITE WILL PROBABLY BENEFIT REMARK 6 BY 3PTP FURTHER REFINEMENT. THIS REGION WAS FIRST REMARK 6 IDENTIFIED AS 3PTP THE PRIMARY CA2+ BINDING SITE OF TRYPSIN REMARK 6 BY BODE AND 3PTP SCHWAGER, F.E.B.S. LETT., VOL. 56, P139 REMARK 6 (1975). 3PTP REMARK 7 REMARK 7 3PTP THE TRYPSIN IN THE CRYSTAL CONTAINS ABOUT 50 PER-CENT REMARK 7 3PTP ALPHA-TRYPSIN WHICH IS AUTOLYTICALLY CLEAVED BETWEEN REMARK 7 3PTP LYS 145 AND SER 146. THE DENSITY IN THE MAP AT THIS REMARK 7 POINT 3PTP IS WEAK BUT APPEARS TO ARISE FROM THE UNCLEAVED REMARK 7 COMPONENT. 3PTP REMARK 8 REMARK 8 3PTP THE HYDROGEN BONDING BETWEEN STRANDS 4 AND 5 OF SHEET REMARK 8 3PTP *SH1* IS IRREGULAR. 3PTP REMARK 9 REMARK 9 3PTP REFINEMENT OF THE STRUCTURE IS CONTINUING AND AN REMARK 9 UPDATED 3PTP SET OF COORDINATES WILL BE PROVIDE WHEN THE REMARK 9 REFINEMENT IS 3PTP JUDGED COMPLETE. AVERAGE DEVIATIONS OF REMARK 9 BOND LENGTHS AND 3PTP ANGLES FROM IDEAL VALUES ARE REMARK 9 RESPECTIVELY 0.023 ANGSTROMS 3PTP AND 2.7 DEGREES FOR THESE REMARK 9 COORDINATES. 3PTP REMARK 10 REMARK 10 3PTP COORDINATES FOR ONE OF THE ISOPROPYL GROUPS OF THE * REMARK 10 DIP* 3PTP INHIBITOR ARE NOT INCLUDED IN THIS ENTRY. IT IS REMARK 10 THOUGHT 3PTP THAT ONE ISOPROPYL GROUP HAS BEEN CLEAVED FROM REMARK 10 THE 3PTP INHIBITOR AND THAT THIS GROUP IS NOW A 3PTP REMARK 10 MONOISOPROPYLPHOSPHORYL DERIVATIVE. THE REFINED STRUCTURE REMARK 10 3PTP IN THIS REGION LOOKS VERY MUCH LIKE THAT EXPECTED FOR REMARK 10 THE 3PTP TETRAHEDRAL INTERMEDIATE IN THE REACTION SEQUENCE. REMARK 10 THE NE2 3PTP OF HIS 57 IS HYDROGEN-BONDED TO O1A OF THE DIP REMARK 10 GROUP, 3PTP WHICH CORRESPONDS TO THE LEAVING GROUP NITROGEN REMARK 10 OF A 3PTP SPECIFIC SUBSTRATE. 3PTP REMARK 11 REMARK 11 3PTP CORRECTION. UPDATE JRNL REFERENCE TO REFLECT REMARK 11 PUBLICATION. 3PTP 13-SEP-79. 3PTP REMARK 12 REMARK 12 3PTP CORRECTION. CHANGE ISSN CODE FOR JRNL REFERENCE AND REMARK 12 3PTP REFERENCE 1. 01-OCT-80. 3PTP REMARK 13 REMARK 13 3PTP CORRECTION. STANDARDIZE FORMAT OF REMARK 2. 31-DEC-80. REMARK 13 3PTP REMARK 14 REMARK 14 3PTP CORRECTION. CORRECT RESIDUE IDENTIFICATION ON STRAND 4 REMARK 14 OF 3PTP SHEET SH1 RECORD AND ON TURN 10 AND TURN 14 REMARK 14 RECORDS. 3PTP 20-APR-81. 3PTP REMARK 15 REMARK 15 3PTP CORRECTION. CHANGE CODEN FOR REFERENCE 2. 02-MAR-82. REMARK 15 3PTP REMARK 16 REMARK 16 3PTP CORRECTION. INSERT REVDAT RECORDS. 30-SEP-83. 3PTP REMARK 17 REMARK 17 3PTP CORRECTION. CORRECT ISSN FOR REFERENCE 6. 31-MAY-84. REMARK 17 3PTP REMARK 18 REMARK 18 3PTP CORRECTION. CORRECT TYPESETTING CONVENTIONS FOR REMARK 18 REFERENCES 3PTP 1 AND 6. 24-OCT-86. 3PTP REMARK 19 REMARK 19 3PTP CORRECTION. THIS ENTRY IS OBSOLETE. 16-JUL-88. 3PTP REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OG SER 195 P DIP 1 1.56 REMARK 500 O CYS 201 O HOH 80 1.75 REMARK 500 C CYS 201 O HOH 80 2.05 REMARK 500 CB CYS 201 O HOH 80 2.09 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR 59 OD2 ASP 153 4456 1.94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP 165 CB ASP 165 CG 0.217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER 146 CA - C - N ANGL. DEV. = 26.5 DEGREES REMARK 500 SER 147 C - N - CA ANGL. DEV. =-31.9 DEGREES REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 6 DISTANCE = 10.54 ANGSTROMS REMARK 525 HOH 10 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH 18 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH 76 DISTANCE = 24.11 ANGSTROMS REMARK 525 HOH 35 DISTANCE = 6.30 ANGSTROMS SEQRES 1 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 223 SER ASN FTNOTE 1 THE INTERPRETATION IS STILL TENTATIVE IN THE TWO REGIONS FTNOTE 1 THR 144 - THR 149 AND CYS 201 - GLN 210. FTNOTE 2 THE AREA AROUND THE ACTIVE SITE HIS 57, ASP 102, SER 195 FTNOTE 2 IS PARTICULARLY WELL DEFINED. HET CA 45 1 HET DIP 1 7 HETNAM CA CALCIUM ION HETNAM DIP DIPENTYLAMINE FORMUL 2 CA CA 2+ FORMUL 3 DIP C10 H23 N FORMUL 4 HOH *79(H2 O1) HELIX 1 SHO SER 164 TYR 172 1IRREGULAR AFTER CYS 168 9 HELIX 2 310 LYS 230 VAL 235 5LEADS INTO TERMINAL ALPHA-HLX 6 HELIX 3 TER TYR 234 ASN 245 1C-TERMINAL HELIX 12 SHEET 1 SH1 7 TYR 20 TYR 20 0 SHEET 2 SH1 7 LYS 156 PRO 161 -1 N TYR 20 O CYS 157 SHEET 3 SH1 7 CYS 136 GLY 140 -1 N LEU 158 O ILE 138 SHEET 4 SH1 7 GLY 197 CYS 201 -1 N VAL 200 O LEU 137 SHEET 5 SH1 7 LYS 204 SER 214 -1 N VAL 213 O GLY 197 SHEET 6 SH1 7 GLY 226 VAL 231 -1 N THR 229 O ILE 212 SHEET 7 SH1 7 ASN 179 ALA 183 -1 N PHE 181 O TYR 228 SHEET 1 SH2 4 GLY 43 SER 45 0 SHEET 2 SH2 4 VAL 52 ALA 55 -1 N VAL 53 O SER 45 SHEET 3 SH2 4 MET 104 LYS 107 -1 N SER 54 O MET 104 SHEET 4 SH2 4 LYS 87 HIS 91 -1 N HIS 91 O ILE 103 SHEET 1 SH3 2 ILE 63 LEU 66 0 SHEET 2 SH3 2 GLN 81 ALA 85 -1 N GLN 81 O LEU 66 TURN 1 L03 ALA 56 TYR 59 LOOP CONTAINS ACTIVE SITE HIS TURN 2 L01 GLY 23 THR 26 TURN 3 L02 ASN 48 TRP 51 TURN 4 L04 HIS 91 TYR 94 MORE LIKE 3/10 HELIX THAN BEND TURN 5 L05 LEU 99 ASP 102 TURN 6 L06 ASN 115 VAL 118 3/10 LOOP ROUGHLY FORMED TURN 7 L07 SER 130 THR 134 SEQUENCE DELETION AT 131 TURN 8 L08 TYR 172 GLN 175 TURN 9 L09 THR 177 MET 180 TURN 10 L10 TYR 184A GLY 187 3/10 LOOP ROUGHLY FORMED TURN 11 L11 CYS 191 ASP 194 TURN 12 L12 ASP 194 GLY 197 CONTAINS ACTIVE SITE SERINE TURN 13 L13 CYS 201 LYS 204 TURN 14 L14 GLN 221A LYS 224 SSBOND 1 CYS 22 CYS 157 SSBOND 2 CYS 42 CYS 58 SSBOND 3 CYS 128 CYS 232 SSBOND 4 CYS 136 CYS 201 SSBOND 5 CYS 168 CYS 182 SSBOND 6 CYS 191 CYS 220 SITE 1 CAT 4 HIS 57 ASP 102 GLY 193 SER 195 SITE 1 BIN 10 ASP 189 SER 190 CYS 191 GLN 192 SITE 2 BIN 10 SER 214 TRP 215 GLY 216 SER 217 SITE 3 BIN 10 GLY 219 CYS 220 SITE 1 ION 11 GLU 70 ASP 71 ASN 72 ILE 73 SITE 2 ION 11 ASN 74 VAL 75 VAL 76 GLU 77 SITE 3 ION 11 GLY 78 ASN 79 GLU 80 CRYST1 54.840 58.610 67.470 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 0.018235 0.000000 0.000000 0.00000 ORIGX2 0.000000 0.017062 0.000000 0.00000 ORIGX3 0.000000 0.000000 0.014821 0.00000 SCALE1 0.018235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014821 0.00000