HEADER LYASE 04-DEC-10 3PUE TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF DHYDRODIPICOLINATE SYNTHASE FROM TITLE 2 ACINETOBACTER BAUMANNII WITH LYSINE AT 2.6A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DHDPS, RESIDUES IN UNP 7-297; COMPND 5 EC: 4.2.1.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 575584; SOURCE 4 STRAIN: ATCC 19606; SOURCE 5 GENE: DHDPS, HMPREF0010_03414; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS TIM BARREL, BETA-ALPHA-BARREL, DIAMINOPIMELATE BIOSYNTHESIS, LYSINE KEYWDS 2 BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.JITHESH,S.YAMINI,N.KAUR,A.GAUTAM,R.TEWARI,G.S.KUSHWAHA,P.KAUR, AUTHOR 2 A.SRINIVASAN,S.SHARMA,T.P.SINGH REVDAT 2 01-NOV-23 3PUE 1 REMARK REVDAT 1 22-DEC-10 3PUE 0 JRNL AUTH O.JITHESH,S.YAMINI,N.KAUR,A.GAUTAM,R.TEWARI,G.S.KUSHWAHA, JRNL AUTH 2 P.KAUR,A.SRINIVASAN,S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF DHYDRODIPICOLINATE JRNL TITL 2 SYNTHASE FROM ACINETOBACTER BAUMANNII WITH LYSINE AT 2.6A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 6550898.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3140 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 3.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.320 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 38.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : LIG.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : LIG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20253 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 84.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3NOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULPHATE, 0.1M BIS-TRIS, REMARK 280 PH 5.6, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.51900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.79707 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.61867 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 84.51900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 48.79707 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.61867 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 84.51900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 48.79707 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.61867 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.59413 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.23733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 97.59413 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.23733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 97.59413 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.23733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 178 N LYS A 180 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 136 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 ASN A 178 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 128.50 -39.02 REMARK 500 LYS A 69 15.57 48.95 REMARK 500 TYR A 107 -43.04 75.70 REMARK 500 LYS A 109 57.84 37.17 REMARK 500 VAL A 135 68.95 -158.26 REMARK 500 GLU A 258 3.92 -67.77 REMARK 500 ILE A 266 131.04 -172.97 REMARK 500 PRO A 269 -6.59 -57.28 REMARK 500 LEU A 273 134.95 -36.51 REMARK 500 GLN A 276 -34.04 -39.03 REMARK 500 LYS B 69 4.03 59.85 REMARK 500 TYR B 107 -47.63 71.45 REMARK 500 LYS B 109 59.77 34.89 REMARK 500 VAL B 135 70.32 -153.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 106 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS B 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 296 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NOE RELATED DB: PDB REMARK 900 RELATED ID: 3PUD RELATED DB: PDB REMARK 900 RELATED ID: 3PUL RELATED DB: PDB DBREF 3PUE A 1 291 UNP D0CFC3 D0CFC3_ACIBA 7 297 DBREF 3PUE B 1 291 UNP D0CFC3 D0CFC3_ACIBA 7 297 SEQRES 1 A 291 THR ILE GLN GLY SER ILE VAL ALA ILE VAL THR PRO MET SEQRES 2 A 291 LEU LYS ASP GLY GLY VAL ASP TRP LYS SER LEU GLU LYS SEQRES 3 A 291 LEU VAL GLU TRP HIS ILE GLU GLN GLY THR ASN SER ILE SEQRES 4 A 291 VAL ALA VAL GLY THR THR GLY GLU ALA SER THR LEU SER SEQRES 5 A 291 MET GLU GLU HIS THR GLN VAL ILE LYS GLU ILE ILE ARG SEQRES 6 A 291 VAL ALA ASN LYS ARG ILE PRO ILE ILE ALA GLY THR GLY SEQRES 7 A 291 ALA ASN SER THR ARG GLU ALA ILE GLU LEU THR LYS ALA SEQRES 8 A 291 ALA LYS ASP LEU GLY ALA ASP ALA ALA LEU LEU VAL THR SEQRES 9 A 291 PRO TYR TYR ASN LYS PRO THR GLN GLU GLY LEU TYR GLN SEQRES 10 A 291 HIS TYR LYS ALA ILE ALA GLU ALA VAL GLU LEU PRO LEU SEQRES 11 A 291 ILE LEU TYR ASN VAL PRO GLY ARG THR GLY VAL ASP LEU SEQRES 12 A 291 SER ASN ASP THR ALA VAL ARG LEU ALA GLU ILE PRO ASN SEQRES 13 A 291 ILE VAL GLY ILE LYS ASP ALA THR GLY ASP VAL PRO ARG SEQRES 14 A 291 GLY LYS ALA LEU ILE ASP ALA LEU ASN GLY LYS MET ALA SEQRES 15 A 291 VAL TYR SER GLY ASP ASP GLU THR ALA TRP GLU LEU MET SEQRES 16 A 291 LEU LEU GLY ALA ASP GLY ASN ILE SER VAL THR ALA ASN SEQRES 17 A 291 ILE ALA PRO LYS ALA MET SER GLU VAL CYS ALA VAL ALA SEQRES 18 A 291 ILE ALA LYS ASP GLU GLN GLN ALA LYS THR LEU ASN ASN SEQRES 19 A 291 LYS ILE ALA ASN LEU HIS ASN ILE LEU PHE CYS GLU SER SEQRES 20 A 291 ASN PRO ILE PRO VAL LYS TRP ALA LEU HIS GLU MET GLY SEQRES 21 A 291 LEU ILE ASP THR GLY ILE ARG LEU PRO LEU THR PRO LEU SEQRES 22 A 291 ALA GLU GLN TYR ARG GLU PRO LEU ARG ASN ALA LEU LYS SEQRES 23 A 291 ASP ALA GLY ILE ILE SEQRES 1 B 291 THR ILE GLN GLY SER ILE VAL ALA ILE VAL THR PRO MET SEQRES 2 B 291 LEU LYS ASP GLY GLY VAL ASP TRP LYS SER LEU GLU LYS SEQRES 3 B 291 LEU VAL GLU TRP HIS ILE GLU GLN GLY THR ASN SER ILE SEQRES 4 B 291 VAL ALA VAL GLY THR THR GLY GLU ALA SER THR LEU SER SEQRES 5 B 291 MET GLU GLU HIS THR GLN VAL ILE LYS GLU ILE ILE ARG SEQRES 6 B 291 VAL ALA ASN LYS ARG ILE PRO ILE ILE ALA GLY THR GLY SEQRES 7 B 291 ALA ASN SER THR ARG GLU ALA ILE GLU LEU THR LYS ALA SEQRES 8 B 291 ALA LYS ASP LEU GLY ALA ASP ALA ALA LEU LEU VAL THR SEQRES 9 B 291 PRO TYR TYR ASN LYS PRO THR GLN GLU GLY LEU TYR GLN SEQRES 10 B 291 HIS TYR LYS ALA ILE ALA GLU ALA VAL GLU LEU PRO LEU SEQRES 11 B 291 ILE LEU TYR ASN VAL PRO GLY ARG THR GLY VAL ASP LEU SEQRES 12 B 291 SER ASN ASP THR ALA VAL ARG LEU ALA GLU ILE PRO ASN SEQRES 13 B 291 ILE VAL GLY ILE LYS ASP ALA THR GLY ASP VAL PRO ARG SEQRES 14 B 291 GLY LYS ALA LEU ILE ASP ALA LEU ASN GLY LYS MET ALA SEQRES 15 B 291 VAL TYR SER GLY ASP ASP GLU THR ALA TRP GLU LEU MET SEQRES 16 B 291 LEU LEU GLY ALA ASP GLY ASN ILE SER VAL THR ALA ASN SEQRES 17 B 291 ILE ALA PRO LYS ALA MET SER GLU VAL CYS ALA VAL ALA SEQRES 18 B 291 ILE ALA LYS ASP GLU GLN GLN ALA LYS THR LEU ASN ASN SEQRES 19 B 291 LYS ILE ALA ASN LEU HIS ASN ILE LEU PHE CYS GLU SER SEQRES 20 B 291 ASN PRO ILE PRO VAL LYS TRP ALA LEU HIS GLU MET GLY SEQRES 21 B 291 LEU ILE ASP THR GLY ILE ARG LEU PRO LEU THR PRO LEU SEQRES 22 B 291 ALA GLU GLN TYR ARG GLU PRO LEU ARG ASN ALA LEU LYS SEQRES 23 B 291 ASP ALA GLY ILE ILE HET SO4 A 292 5 HET SO4 A 293 5 HET LYS B 292 10 HET GOL B 293 6 HET GOL B 294 6 HET SO4 B 295 5 HET GOL B 296 6 HETNAM SO4 SULFATE ION HETNAM LYS LYSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 LYS C6 H15 N2 O2 1+ FORMUL 6 GOL 3(C3 H8 O3) FORMUL 10 HOH *164(H2 O) HELIX 1 1 ASP A 20 GLY A 35 1 16 HELIX 2 2 GLY A 43 LEU A 51 5 9 HELIX 3 3 SER A 52 ASN A 68 1 17 HELIX 4 4 SER A 81 LEU A 95 1 15 HELIX 5 5 THR A 111 VAL A 126 1 16 HELIX 6 6 VAL A 135 GLY A 140 1 6 HELIX 7 7 SER A 144 ALA A 152 1 9 HELIX 8 8 ASP A 166 LEU A 177 1 12 HELIX 9 9 ASP A 187 LEU A 197 1 11 HELIX 10 10 VAL A 205 ILE A 209 5 5 HELIX 11 11 ALA A 210 ALA A 223 1 14 HELIX 12 12 ASP A 225 LYS A 235 1 11 HELIX 13 13 ILE A 236 LEU A 243 1 8 HELIX 14 14 PRO A 249 GLU A 258 1 10 HELIX 15 15 ALA A 274 GLN A 276 5 3 HELIX 16 16 TYR A 277 ALA A 288 1 12 HELIX 17 17 ASP B 20 GLY B 35 1 16 HELIX 18 18 GLU B 47 LEU B 51 5 5 HELIX 19 19 SER B 52 ASN B 68 1 17 HELIX 20 20 SER B 81 LEU B 95 1 15 HELIX 21 21 THR B 111 VAL B 126 1 16 HELIX 22 22 VAL B 135 GLY B 140 1 6 HELIX 23 23 SER B 144 ALA B 152 1 9 HELIX 24 24 ASP B 166 ASN B 178 1 13 HELIX 25 25 THR B 190 GLY B 198 1 9 HELIX 26 26 VAL B 205 ILE B 209 5 5 HELIX 27 27 ALA B 210 ALA B 223 1 14 HELIX 28 28 ASP B 225 ILE B 236 1 12 HELIX 29 29 ILE B 236 LEU B 243 1 8 HELIX 30 30 PRO B 249 MET B 259 1 11 HELIX 31 31 ALA B 274 GLY B 289 1 16 SHEET 1 A 9 GLY A 4 ALA A 8 0 SHEET 2 A 9 SER A 38 ALA A 41 1 O VAL A 40 N VAL A 7 SHEET 3 A 9 ILE A 73 GLY A 76 1 O ILE A 74 N ILE A 39 SHEET 4 A 9 ALA A 99 VAL A 103 1 O ALA A 99 N ALA A 75 SHEET 5 A 9 LEU A 130 ASN A 134 1 O ILE A 131 N ALA A 100 SHEET 6 A 9 ILE A 157 ASP A 162 1 O GLY A 159 N LEU A 132 SHEET 7 A 9 ALA A 182 SER A 185 1 O TYR A 184 N ASP A 162 SHEET 8 A 9 GLY A 201 SER A 204 1 O ILE A 203 N SER A 185 SHEET 9 A 9 GLY A 4 ALA A 8 1 N ALA A 8 O SER A 204 SHEET 1 B 9 GLY B 4 ALA B 8 0 SHEET 2 B 9 SER B 38 ALA B 41 1 O VAL B 40 N VAL B 7 SHEET 3 B 9 ILE B 73 GLY B 76 1 O ILE B 74 N ILE B 39 SHEET 4 B 9 ALA B 99 VAL B 103 1 O ALA B 99 N ALA B 75 SHEET 5 B 9 LEU B 130 ASN B 134 1 O ILE B 131 N LEU B 102 SHEET 6 B 9 ILE B 157 ASP B 162 1 O LYS B 161 N LEU B 132 SHEET 7 B 9 ALA B 182 SER B 185 1 O ALA B 182 N VAL B 158 SHEET 8 B 9 GLY B 201 SER B 204 1 O GLY B 201 N SER B 185 SHEET 9 B 9 GLY B 4 ALA B 8 1 N ILE B 6 O ASN B 202 CISPEP 1 ASN A 248 PRO A 249 0 -0.79 CISPEP 2 LEU A 268 PRO A 269 0 -5.26 CISPEP 3 ASN B 248 PRO B 249 0 0.82 CISPEP 4 LEU B 268 PRO B 269 0 0.73 SITE 1 AC1 6 VAL A 135 ARG A 138 PHE A 244 HOH A 328 SITE 2 AC1 6 HOH A 335 LYS B 109 SITE 1 AC2 9 ALA A 8 GLY A 43 THR A 44 THR A 45 SITE 2 AC2 9 LEU A 101 TYR A 133 LYS A 161 ILE A 203 SITE 3 AC2 9 HOH A 333 SITE 1 AC3 7 LYS A 109 VAL B 135 ARG B 138 PHE B 244 SITE 2 AC3 7 SER B 247 ASN B 248 HOH B 312 SITE 1 AC4 3 ASP B 225 GLU B 226 GLN B 227 SITE 1 AC5 5 THR A 50 SER B 81 ARG B 83 GLU B 84 SITE 2 AC5 5 GLU B 87 SITE 1 AC6 9 ALA B 8 VAL B 40 GLY B 43 THR B 44 SITE 2 AC6 9 THR B 45 LEU B 101 TYR B 133 LYS B 161 SITE 3 AC6 9 ILE B 203 SITE 1 AC7 2 LYS B 26 LEU B 261 CRYST1 169.038 169.038 61.856 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005916 0.003416 0.000000 0.00000 SCALE2 0.000000 0.006831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016167 0.00000