HEADER HYDROLASE 06-DEC-10 3PV4 TITLE STRUCTURE OF LEGIONELLA FALLONII DEGQ (DELTA-PDZ2 VARIANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA FALLONII; SOURCE 3 ORGANISM_TAXID: 96230; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K12 DEGP-; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS TRYPSIN FOLD, PDZ DOMAIN, CHAPERONE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WRASE,H.SCOTT,R.HILGENFELD,G.HANSEN REVDAT 3 06-SEP-23 3PV4 1 REMARK REVDAT 2 13-JUL-11 3PV4 1 JRNL REVDAT 1 15-JUN-11 3PV4 0 JRNL AUTH R.WRASE,H.SCOTT,R.HILGENFELD,G.HANSEN JRNL TITL THE LEGIONELLA HTRA HOMOLOGUE DEGQ IS A JRNL TITL 2 SELF-COMPARTMENTIZING PROTEASE THAT FORMS LARGE 12-MERIC JRNL TITL 3 ASSEMBLIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 10490 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21670246 JRNL DOI 10.1073/PNAS.1101084108 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 5367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.31000 REMARK 3 B22 (A**2) : -3.31000 REMARK 3 B33 (A**2) : 4.97000 REMARK 3 B12 (A**2) : -1.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.648 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.584 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.083 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2105 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1382 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2851 ; 1.377 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3431 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 7.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;40.913 ;26.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;22.434 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2297 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 576 ; 0.049 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 0.985 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 717 ; 0.839 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 604 ; 1.507 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5626 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 55.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : 0.40100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3PV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23.5% (V/V) PEG 400, 100 MM CDCL2, 100 REMARK 280 MM ACETATE PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.01119 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.64433 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.44500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.01119 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.64433 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.44500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.01119 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.64433 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.02237 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.28867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.02237 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.28867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.02237 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.28867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 ASP A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 ASP A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ASN A 45 REMARK 465 GLN A 46 REMARK 465 PRO A 47 REMARK 465 ASN A 48 REMARK 465 ASN A 49 REMARK 465 ARG A 50 REMARK 465 PRO A 51 REMARK 465 PRO A 52 REMARK 465 GLN A 53 REMARK 465 SER A 54 REMARK 465 ARG A 55 REMARK 465 MET A 56 REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 LYS A 59 REMARK 465 GLY A 60 REMARK 465 ASN A 152 REMARK 465 SER A 153 REMARK 465 PHE A 154 REMARK 465 GLY A 155 REMARK 465 ASN A 156 REMARK 465 ARG A 170 REMARK 465 SER A 171 REMARK 465 ASP A 172 REMARK 465 LEU A 173 REMARK 465 ASN A 174 REMARK 465 ILE A 175 REMARK 465 GLU A 176 REMARK 465 GLY A 177 REMARK 465 VAL A 178 REMARK 465 GLU A 179 REMARK 465 ASN A 189 REMARK 465 PRO A 190 REMARK 465 GLY A 191 REMARK 465 ASN A 192 REMARK 465 SER A 213 REMARK 465 PRO A 214 REMARK 465 TYR A 215 REMARK 465 GLY A 216 REMARK 465 GLY A 217 REMARK 465 ASN A 218 REMARK 465 ILE A 341 REMARK 465 LYS A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 151.79 -45.46 REMARK 500 GLN A 26 97.29 -68.28 REMARK 500 ARG A 100 93.44 -55.83 REMARK 500 LEU A 106 97.46 -67.00 REMARK 500 ASP A 110 82.14 -169.65 REMARK 500 ASP A 114 22.15 37.89 REMARK 500 LEU A 136 105.77 -59.47 REMARK 500 ASN A 147 67.02 -155.16 REMARK 500 SER A 242 -156.79 -102.95 REMARK 500 ILE A 243 99.07 55.01 REMARK 500 ARG A 245 154.36 67.37 REMARK 500 MET A 248 67.75 30.03 REMARK 500 MET A 263 40.29 -97.12 REMARK 500 VAL A 274 104.81 -59.00 REMARK 500 GLN A 296 102.85 -161.63 REMARK 500 ASN A 298 -134.55 48.02 REMARK 500 LYS A 309 -77.89 -60.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 241 SER A 242 -147.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 343 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 258 OE1 REMARK 620 2 GLU A 258 OE2 52.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 343 DBREF 3PV4 A -11 342 PDB 3PV4 3PV4 -11 342 SEQRES 1 A 354 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 354 GLU PRO PRO ASN MET PRO SER MET ALA PRO VAL LEU LYS SEQRES 3 A 354 ASN ILE MET PRO ALA ILE VAL ASN VAL ALA VAL GLN GLY SEQRES 4 A 354 TYR LEU PRO ASN ASP VAL THR PRO PRO GLY SER ALA GLY SEQRES 5 A 354 ASN ASP GLU GLU ASN GLN PRO ASN ASN ARG PRO PRO GLN SEQRES 6 A 354 SER ARG MET PRO GLU LYS GLY ARG LYS PHE GLU SER ILE SEQRES 7 A 354 GLY SER GLY VAL ILE ILE ASP PRO ASN ASN GLY VAL ILE SEQRES 8 A 354 ILE THR ASN ASP HIS VAL ILE ARG ASN ALA SER LEU ILE SEQRES 9 A 354 THR VAL THR LEU GLN ASP GLY ARG ARG LEU LYS ALA ARG SEQRES 10 A 354 LEU ILE GLY GLY ASP SER GLU THR ASP LEU ALA VAL LEU SEQRES 11 A 354 LYS ILE ASP ALA LYS ASN LEU LYS SER LEU VAL ILE GLY SEQRES 12 A 354 ASP SER ASP LYS LEU GLU VAL GLY ASP PHE VAL VAL ALA SEQRES 13 A 354 ILE GLY ASN PRO PHE GLY LEU ASN SER PHE GLY ASN SER SEQRES 14 A 354 GLN SER ALA THR PHE GLY ILE VAL SER ALA LEU LYS ARG SEQRES 15 A 354 SER ASP LEU ASN ILE GLU GLY VAL GLU ASN PHE ILE GLN SEQRES 16 A 354 THR ASP ALA ALA ILE ASN PRO GLY ASN SER GLY GLY ALA SEQRES 17 A 354 LEU VAL ASN ALA LYS GLY GLU LEU ILE GLY ILE ASN THR SEQRES 18 A 354 ALA ILE LEU SER PRO TYR GLY GLY ASN VAL GLY ILE GLY SEQRES 19 A 354 PHE ALA ILE PRO ILE ASN MET VAL LYS ASP VAL ALA GLN SEQRES 20 A 354 GLN ILE ILE LYS PHE GLY SER ILE HIS ARG GLY LEU MET SEQRES 21 A 354 GLY ILE PHE VAL GLN HIS LEU THR PRO GLU LEU ALA GLN SEQRES 22 A 354 ALA MET GLY TYR PRO GLU ASP PHE GLN GLY ALA LEU VAL SEQRES 23 A 354 SER GLN VAL ASN PRO ASN SER PRO ALA GLU LEU ALA GLY SEQRES 24 A 354 LEU LYS ALA GLY ASP ILE ILE THR GLN ILE ASN ASP THR SEQRES 25 A 354 LYS ILE THR GLN ALA THR GLN VAL LYS THR THR ILE SER SEQRES 26 A 354 LEU LEU ARG VAL GLY SER THR VAL LYS ILE ILE VAL GLU SEQRES 27 A 354 ARG ASP ASN LYS PRO LEU THR LEU SER ALA VAL VAL THR SEQRES 28 A 354 ASP ILE LYS HET CD A 343 1 HETNAM CD CADMIUM ION FORMUL 2 CD CD 2+ HELIX 1 1 MET A 9 MET A 17 1 9 HELIX 2 2 SER A 111 THR A 113 5 3 HELIX 3 3 ASP A 132 LEU A 136 5 5 HELIX 4 4 ILE A 227 PHE A 240 1 14 HELIX 5 5 THR A 256 MET A 263 1 8 HELIX 6 6 SER A 281 ALA A 286 1 6 HELIX 7 7 THR A 306 LEU A 314 1 9 SHEET 1 A 6 THR A 93 THR A 95 0 SHEET 2 A 6 ILE A 20 TYR A 28 -1 N ALA A 24 O THR A 93 SHEET 3 A 6 LYS A 62 ASP A 73 -1 O SER A 65 N VAL A 25 SHEET 4 A 6 VAL A 78 ASN A 82 -1 O ILE A 80 N VAL A 70 SHEET 5 A 6 LEU A 115 ILE A 120 -1 O LEU A 118 N ILE A 79 SHEET 6 A 6 ALA A 104 ASP A 110 -1 N GLY A 108 O VAL A 117 SHEET 1 B 7 PHE A 141 GLY A 146 0 SHEET 2 B 7 SER A 159 ALA A 167 -1 O GLY A 163 N VAL A 142 SHEET 3 B 7 ILE A 182 THR A 184 -1 O GLN A 183 N SER A 166 SHEET 4 B 7 GLY A 222 PRO A 226 -1 O GLY A 222 N THR A 184 SHEET 5 B 7 LEU A 204 ASN A 208 -1 N ILE A 207 O ILE A 225 SHEET 6 B 7 ALA A 196 ASN A 199 -1 N LEU A 197 O GLY A 206 SHEET 7 B 7 PHE A 141 GLY A 146 -1 N ILE A 145 O ALA A 196 SHEET 1 C 5 ILE A 250 HIS A 254 0 SHEET 2 C 5 ALA A 272 VAL A 277 -1 O LEU A 273 N GLN A 253 SHEET 3 C 5 ILE A 293 ILE A 297 -1 O ILE A 294 N ALA A 272 SHEET 4 C 5 THR A 320 ARG A 327 -1 O ILE A 324 N GLN A 296 SHEET 5 C 5 LYS A 330 LEU A 332 -1 O LEU A 332 N VAL A 325 SHEET 1 D 4 THR A 300 LYS A 301 0 SHEET 2 D 4 ILE A 293 ILE A 297 -1 N ILE A 297 O THR A 300 SHEET 3 D 4 THR A 320 ARG A 327 -1 O ILE A 324 N GLN A 296 SHEET 4 D 4 SER A 335 VAL A 337 -1 O ALA A 336 N VAL A 321 LINK OE1 GLU A 258 CD CD A 343 1555 1555 2.38 LINK OE2 GLU A 258 CD CD A 343 1555 1555 2.59 SITE 1 AC1 2 GLU A 203 GLU A 258 CRYST1 110.890 110.890 67.933 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009018 0.005207 0.000000 0.00000 SCALE2 0.000000 0.010413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014720 0.00000