HEADER IMMUNE SYSTEM 06-DEC-10 3PV9 OBSLTE 15-OCT-14 3PV9 4WJ0 TITLE STRUCTURE OF PH1245, A CAS1 FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN PH1245; COMPND 3 CHAIN: D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PH1245; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CRISPR, CRISPR-ASSOCIATED CAS1, METALLONUCLEASE, DNASE, PROK IMMUNE KEYWDS 2 SYSTEM, IMMUNE SYSTEM, NUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,A.SAVCHENKO,A.F.YAKUNIN REVDAT 2 15-OCT-14 3PV9 1 OBSLTE VERSN REVDAT 1 22-DEC-10 3PV9 0 JRNL AUTH P.PETIT,G.BROWN,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURE DETERMINATION AND OVERALL COMPARISON OF THREE CAS1 JRNL TITL 2 PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 15603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3375 - 5.1710 0.96 2606 124 0.2724 0.2732 REMARK 3 2 5.1710 - 4.1080 0.97 2507 123 0.2365 0.2569 REMARK 3 3 4.1080 - 3.5898 0.98 2479 142 0.2533 0.3093 REMARK 3 4 3.5898 - 3.2620 0.98 2474 131 0.2648 0.3250 REMARK 3 5 3.2620 - 3.0285 0.95 2417 122 0.2838 0.3747 REMARK 3 6 3.0285 - 2.8501 0.94 2337 141 0.2996 0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 62.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52100 REMARK 3 B22 (A**2) : -6.87950 REMARK 3 B33 (A**2) : 5.35850 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 4739 REMARK 3 ANGLE : 1.914 6435 REMARK 3 CHIRALITY : 0.120 737 REMARK 3 PLANARITY : 0.012 819 REMARK 3 DIHEDRAL : 19.201 1677 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.0358 -40.2499 6.7638 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0107 REMARK 3 T33: 0.0257 T12: -0.0345 REMARK 3 T13: 0.0235 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.4871 L22: 0.3820 REMARK 3 L33: 0.6462 L12: -0.2568 REMARK 3 L13: -0.0681 L23: -0.2083 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.1547 S13: -0.0437 REMARK 3 S21: 0.0611 S22: 0.0233 S23: 0.0261 REMARK 3 S31: -0.0271 S32: -0.0610 S33: -0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB062854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15944 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.1M CITRIC ACETATE, PH REMARK 280 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.07350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.33600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.07350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.33600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 PRO D 165 REMARK 465 GLU D 166 REMARK 465 GLU D 167 REMARK 465 PHE D 168 REMARK 465 LYS D 169 REMARK 465 ILE D 170 REMARK 465 VAL D 171 REMARK 465 LYS D 172 REMARK 465 ARG D 173 REMARK 465 THR D 174 REMARK 465 ARG D 175 REMARK 465 ARG D 176 REMARK 465 PRO D 177 REMARK 465 LYS D 284 REMARK 465 HIS D 285 REMARK 465 PRO D 286 REMARK 465 LYS D 287 REMARK 465 ILE D 288 REMARK 465 GLY D 289 REMARK 465 SER D 290 REMARK 465 ASN D 291 REMARK 465 ALA D 320 REMARK 465 TRP D 321 REMARK 465 PHE D 322 REMARK 465 MET E 1 REMARK 465 ARG E 2 REMARK 465 LYS E 3 REMARK 465 LYS E 4 REMARK 465 PRO E 5 REMARK 465 THR E 15 REMARK 465 ARG E 16 REMARK 465 ARG E 17 REMARK 465 GLU E 18 REMARK 465 ASN E 19 REMARK 465 THR E 20 REMARK 465 LEU E 21 REMARK 465 LYS E 284 REMARK 465 HIS E 285 REMARK 465 PRO E 286 REMARK 465 LYS E 287 REMARK 465 ILE E 288 REMARK 465 GLY E 289 REMARK 465 SER E 290 REMARK 465 ASN E 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 THR D 13 OG1 CG2 REMARK 470 LEU D 14 CG CD1 CD2 REMARK 470 ARG D 16 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 470 ASN D 19 CG OD1 ND2 REMARK 470 TYR D 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 24 CD OE1 OE2 REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 34 CG1 CG2 CD1 REMARK 470 GLN D 51 CG CD OE1 NE2 REMARK 470 LEU D 53 CG CD1 CD2 REMARK 470 ILE D 56 CG1 CG2 CD1 REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 ARG D 79 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 88 CG1 CG2 CD1 REMARK 470 LYS D 114 CG CD CE NZ REMARK 470 ARG D 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 121 CG CD CE NZ REMARK 470 LYS D 126 CG CD CE NZ REMARK 470 LYS D 128 CG CD CE NZ REMARK 470 LEU D 129 CG CD1 CD2 REMARK 470 ASP D 134 CG OD1 OD2 REMARK 470 LEU D 136 CG CD1 CD2 REMARK 470 ARG D 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 179 CG CD CE NZ REMARK 470 GLU D 181 CG CD OE1 OE2 REMARK 470 ARG D 219 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 246 CG CD CE NZ REMARK 470 LYS D 251 CG CD CE NZ REMARK 470 ARG D 255 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 258 CB CG CD1 CD2 REMARK 470 LYS D 273 CG CD CE NZ REMARK 470 LYS D 304 CG CD CE NZ REMARK 470 LEU D 305 CG CD1 CD2 REMARK 470 LYS D 307 CG CD CE NZ REMARK 470 GLU D 313 CG CD OE1 OE2 REMARK 470 TYR D 315 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 316 CG CD CE NZ REMARK 470 PHE E 23 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU E 24 CG CD OE1 OE2 REMARK 470 LYS E 27 CG CD CE NZ REMARK 470 ARG E 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 30 CG CD CE NZ REMARK 470 GLU E 35 CG CD OE1 OE2 REMARK 470 ILE E 48 CG1 CG2 CD1 REMARK 470 TYR E 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG E 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 106 CE NZ REMARK 470 LYS E 114 CG CD CE NZ REMARK 470 ARG E 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 121 CG CD CE NZ REMARK 470 LYS E 128 CG CD CE NZ REMARK 470 ARG E 140 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 159 CG CD CE NZ REMARK 470 GLU E 166 CG CD OE1 OE2 REMARK 470 ARG E 175 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 181 CG CD OE1 OE2 REMARK 470 ARG E 219 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 251 CG CD CE NZ REMARK 470 LYS E 307 CG CD CE NZ REMARK 470 LYS E 316 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE E 8 CB - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 PRO E 165 C - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 17 108.39 -167.19 REMARK 500 ALA D 26 88.82 -166.56 REMARK 500 ASN D 67 -61.26 -10.23 REMARK 500 HIS D 68 -26.37 145.78 REMARK 500 ARG D 79 125.31 -25.08 REMARK 500 LEU D 83 122.19 -170.89 REMARK 500 LEU D 133 -78.89 -87.65 REMARK 500 ASP D 134 -12.59 -42.92 REMARK 500 ALA D 158 58.36 -97.31 REMARK 500 ASN D 163 76.78 -158.79 REMARK 500 LYS D 179 -67.88 -122.35 REMARK 500 ASN D 180 -176.03 -62.13 REMARK 500 SER D 228 1.92 -61.27 REMARK 500 ILE D 235 -67.60 -96.89 REMARK 500 LYS D 251 -2.29 -54.94 REMARK 500 THR D 264 -177.11 -61.46 REMARK 500 ILE D 298 -54.53 -28.16 REMARK 500 SER E 10 -43.06 -141.47 REMARK 500 GLU E 35 -81.16 -98.13 REMARK 500 PHE E 66 -160.92 -121.34 REMARK 500 ASN E 67 -146.61 -137.97 REMARK 500 HIS E 68 -70.92 -64.62 REMARK 500 TYR E 69 69.04 -100.07 REMARK 500 ILE E 88 -39.63 -39.34 REMARK 500 ALA E 127 -67.33 -142.01 REMARK 500 ASP E 134 2.08 -57.52 REMARK 500 ASP E 138 35.56 -94.66 REMARK 500 ASN E 163 -77.63 -86.86 REMARK 500 LEU E 164 59.82 -101.44 REMARK 500 PRO E 165 56.78 -111.41 REMARK 500 VAL E 171 -71.17 -104.74 REMARK 500 PRO E 208 11.76 -69.25 REMARK 500 PRO E 216 -70.28 -49.03 REMARK 500 ARG E 220 -147.91 -120.96 REMARK 500 ILE E 235 -69.29 -100.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS D 159 TRP D 160 139.22 REMARK 500 SER D 282 VAL D 283 148.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 3PV9 D 1 322 UNP O58938 O58938_PYRHO 1 322 DBREF 3PV9 E 1 322 UNP O58938 O58938_PYRHO 1 322 SEQRES 1 D 322 MET ARG LYS LYS PRO LEU THR ILE PHE SER ASP GLY THR SEQRES 2 D 322 LEU THR ARG ARG GLU ASN THR LEU TYR PHE GLU SER ALA SEQRES 3 D 322 LYS GLY ARG LYS PRO LEU ALA ILE GLU GLY ILE TYR ASP SEQRES 4 D 322 ILE TYR ILE TYR GLY HIS VAL ASN ILE THR SER GLN ALA SEQRES 5 D 322 LEU HIS TYR ILE ALA GLN LYS GLY ILE LEU ILE HIS PHE SEQRES 6 D 322 PHE ASN HIS TYR GLY TYR TYR ASP GLY THR PHE TYR PRO SEQRES 7 D 322 ARG GLU THR LEU LEU SER GLY ASP LEU ILE ILE ARG GLN SEQRES 8 D 322 ALA GLU HIS TYR LEU ASN LYS GLU LYS ARG LEU PHE LEU SEQRES 9 D 322 ALA LYS SER PHE VAL THR GLY GLY THR LYS ASN MET GLU SEQRES 10 D 322 ARG ASN LEU LYS ASN TRP GLY ILE LYS ALA LYS LEU SER SEQRES 11 D 322 ASP TYR LEU ASP GLU LEU ASN ASP ALA ARG LYS ILE THR SEQRES 12 D 322 GLU ILE MET ASN VAL GLU ALA ARG ILE ARG GLN GLU TYR SEQRES 13 D 322 TYR ALA LYS TRP ASP GLU ASN LEU PRO GLU GLU PHE LYS SEQRES 14 D 322 ILE VAL LYS ARG THR ARG ARG PRO PRO LYS ASN GLU MET SEQRES 15 D 322 ASN ALA LEU ILE SER PHE LEU ASN SER ARG LEU TYR ALA SEQRES 16 D 322 THR ILE ILE THR GLU ILE TYR ASN THR GLN LEU ALA PRO SEQRES 17 D 322 THR ILE SER TYR LEU HIS GLU PRO SER GLU ARG ARG PHE SEQRES 18 D 322 SER LEU SER LEU ASP LEU SER GLU ILE PHE LYS PRO ILE SEQRES 19 D 322 ILE ALA ASP ARG VAL ALA ASN ARG LEU VAL LYS LYS GLY SEQRES 20 D 322 SER LEU LYS LYS GLU HIS PHE ARG GLU ASP LEU ASN GLY SEQRES 21 D 322 VAL LEU LEU THR GLU GLU GLY MET LYS ILE VAL THR LYS SEQRES 22 D 322 ALA TYR ASN GLU GLU LEU GLN LYS SER VAL LYS HIS PRO SEQRES 23 D 322 LYS ILE GLY SER ASN VAL THR ARG GLN ARG LEU ILE ARG SEQRES 24 D 322 LEU GLU ALA TYR LYS LEU ILE LYS HIS LEU VAL GLY VAL SEQRES 25 D 322 GLU GLU TYR LYS PRO LEU VAL ALA TRP PHE SEQRES 1 E 322 MET ARG LYS LYS PRO LEU THR ILE PHE SER ASP GLY THR SEQRES 2 E 322 LEU THR ARG ARG GLU ASN THR LEU TYR PHE GLU SER ALA SEQRES 3 E 322 LYS GLY ARG LYS PRO LEU ALA ILE GLU GLY ILE TYR ASP SEQRES 4 E 322 ILE TYR ILE TYR GLY HIS VAL ASN ILE THR SER GLN ALA SEQRES 5 E 322 LEU HIS TYR ILE ALA GLN LYS GLY ILE LEU ILE HIS PHE SEQRES 6 E 322 PHE ASN HIS TYR GLY TYR TYR ASP GLY THR PHE TYR PRO SEQRES 7 E 322 ARG GLU THR LEU LEU SER GLY ASP LEU ILE ILE ARG GLN SEQRES 8 E 322 ALA GLU HIS TYR LEU ASN LYS GLU LYS ARG LEU PHE LEU SEQRES 9 E 322 ALA LYS SER PHE VAL THR GLY GLY THR LYS ASN MET GLU SEQRES 10 E 322 ARG ASN LEU LYS ASN TRP GLY ILE LYS ALA LYS LEU SER SEQRES 11 E 322 ASP TYR LEU ASP GLU LEU ASN ASP ALA ARG LYS ILE THR SEQRES 12 E 322 GLU ILE MET ASN VAL GLU ALA ARG ILE ARG GLN GLU TYR SEQRES 13 E 322 TYR ALA LYS TRP ASP GLU ASN LEU PRO GLU GLU PHE LYS SEQRES 14 E 322 ILE VAL LYS ARG THR ARG ARG PRO PRO LYS ASN GLU MET SEQRES 15 E 322 ASN ALA LEU ILE SER PHE LEU ASN SER ARG LEU TYR ALA SEQRES 16 E 322 THR ILE ILE THR GLU ILE TYR ASN THR GLN LEU ALA PRO SEQRES 17 E 322 THR ILE SER TYR LEU HIS GLU PRO SER GLU ARG ARG PHE SEQRES 18 E 322 SER LEU SER LEU ASP LEU SER GLU ILE PHE LYS PRO ILE SEQRES 19 E 322 ILE ALA ASP ARG VAL ALA ASN ARG LEU VAL LYS LYS GLY SEQRES 20 E 322 SER LEU LYS LYS GLU HIS PHE ARG GLU ASP LEU ASN GLY SEQRES 21 E 322 VAL LEU LEU THR GLU GLU GLY MET LYS ILE VAL THR LYS SEQRES 22 E 322 ALA TYR ASN GLU GLU LEU GLN LYS SER VAL LYS HIS PRO SEQRES 23 E 322 LYS ILE GLY SER ASN VAL THR ARG GLN ARG LEU ILE ARG SEQRES 24 E 322 LEU GLU ALA TYR LYS LEU ILE LYS HIS LEU VAL GLY VAL SEQRES 25 E 322 GLU GLU TYR LYS PRO LEU VAL ALA TRP PHE FORMUL 3 HOH *36(H2 O) HELIX 1 1 ALA D 33 GLU D 35 5 3 HELIX 2 2 THR D 49 LYS D 59 1 11 HELIX 3 3 ASP D 86 ASN D 97 1 12 HELIX 4 4 ASN D 97 TRP D 123 1 27 HELIX 5 5 LEU D 129 ASP D 131 5 3 HELIX 6 6 TYR D 132 ASN D 137 1 6 HELIX 7 7 LYS D 141 TYR D 157 1 17 HELIX 8 8 ASN D 180 ASN D 203 1 24 HELIX 9 9 PHE D 221 ILE D 235 1 15 HELIX 10 10 ILE D 235 LYS D 245 1 11 HELIX 11 11 LYS D 250 GLU D 252 5 3 HELIX 12 12 THR D 264 GLN D 280 1 17 HELIX 13 13 THR D 293 GLY D 311 1 19 HELIX 14 14 THR E 49 GLN E 58 1 10 HELIX 15 15 ASP E 86 ASN E 97 1 12 HELIX 16 16 ASN E 97 TRP E 123 1 27 HELIX 17 17 LYS E 128 LEU E 133 5 6 HELIX 18 18 LYS E 141 ASP E 161 1 21 HELIX 19 19 PRO E 165 LYS E 169 5 5 HELIX 20 20 GLU E 181 ASN E 203 1 23 HELIX 21 21 PHE E 221 ILE E 235 1 15 HELIX 22 22 ILE E 235 LYS E 245 1 11 HELIX 23 23 LYS E 250 GLU E 252 5 3 HELIX 24 24 THR E 264 GLN E 280 1 17 HELIX 25 25 THR E 293 VAL E 310 1 18 SHEET 1 A 7 LYS D 4 ILE D 8 0 SHEET 2 A 7 ILE D 37 ILE D 42 1 O TYR D 41 N ILE D 8 SHEET 3 A 7 LEU D 62 ASN D 67 1 O HIS D 64 N ILE D 40 SHEET 4 A 7 TYR D 71 PRO D 78 -1 O PHE D 76 N ILE D 63 SHEET 5 A 7 GLY E 74 PRO E 78 -1 O TYR E 77 N THR D 75 SHEET 6 A 7 LEU E 62 PHE E 65 -1 N PHE E 65 O GLY E 74 SHEET 7 A 7 ASP E 39 ILE E 42 1 N ILE E 42 O HIS E 64 SHEET 1 B 4 LYS D 30 PRO D 31 0 SHEET 2 B 4 LEU D 21 GLU D 24 -1 N PHE D 23 O LYS D 30 SHEET 3 B 4 GLY D 12 ARG D 16 -1 N THR D 13 O GLU D 24 SHEET 4 B 4 VAL D 46 ILE D 48 1 O ASN D 47 N LEU D 14 SHEET 1 C 2 PHE D 254 GLU D 256 0 SHEET 2 C 2 VAL D 261 LEU D 263 -1 O LEU D 262 N ARG D 255 SHEET 1 D 2 GLY E 12 LEU E 14 0 SHEET 2 D 2 VAL E 46 ILE E 48 1 O ASN E 47 N GLY E 12 SHEET 1 E 2 PHE E 23 GLU E 24 0 SHEET 2 E 2 ARG E 29 LYS E 30 -1 O LYS E 30 N PHE E 23 SHEET 1 F 2 PHE E 254 GLU E 256 0 SHEET 2 F 2 VAL E 261 LEU E 263 -1 O LEU E 262 N ARG E 255 CISPEP 1 ARG D 17 GLU D 18 0 4.53 CISPEP 2 GLU D 24 SER D 25 0 19.12 CISPEP 3 ALA D 26 LYS D 27 0 1.87 CISPEP 4 LYS D 27 GLY D 28 0 0.52 CISPEP 5 ASN D 163 LEU D 164 0 -5.85 CISPEP 6 PHE E 9 SER E 10 0 -0.46 CISPEP 7 GLU E 162 ASN E 163 0 -16.07 CISPEP 8 ARG E 176 PRO E 177 0 9.16 CISPEP 9 GLU E 218 ARG E 219 0 -0.73 CRYST1 125.890 58.672 90.147 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011093 0.00000