HEADER OXIDOREDUCTASE, TRANSFERASE 06-DEC-10 3PVC TITLE CRYSTAL STRUCTURE OF APO MNMC FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA 5-METHYLAMINOMETHYL-2-THIOURIDINE BIOSYNTHESIS COMPND 3 BIFUNCTIONAL PROTEIN MNMC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRNA MNM(5)S(2)U BIOSYNTHESIS BIFUNCTIONAL PROTEIN, TRNA COMPND 6 (MNM(5)S(2)U34)-METHYLTRANSFERASE, FAD-DEPENDENT CMNM(5)S(2)U34 COMPND 7 OXIDOREDUCTASE; COMPND 8 EC: 2.1.1.-, 1.5.-.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: MNMC, Y1590, YPO2756, YP_2407; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 ROSSMANN FOLD, OXIDATION, METHYLATION, FAD, SAM, OXIDOREDUCTASE, KEYWDS 3 TRANSFERASE, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 4 NYSGRC EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 2 (NYSGRC) REVDAT 4 25-DEC-13 3PVC 1 JRNL REVDAT 3 16-NOV-11 3PVC 1 REMARK REVDAT 2 17-AUG-11 3PVC 1 KEYWDS VERSN REVDAT 1 13-APR-11 3PVC 0 JRNL AUTH J.KIM,S.C.ALMO JRNL TITL STRUCTURAL BASIS FOR HYPERMODIFICATION OF THE WOBBLE URIDINE JRNL TITL 2 IN TRNA BY BIFUNCTIONAL ENZYME MNMC. JRNL REF BMC STRUCT.BIOL. V. 13 5 2013 JRNL REFN ESSN 1472-6807 JRNL PMID 23617613 JRNL DOI 10.1186/1472-6807-13-5 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 29178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5133 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6998 ; 1.475 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 6.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;34.950 ;23.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 769 ;16.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;14.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3999 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3159 ; 1.278 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5037 ; 2.306 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 3.968 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1961 ; 5.988 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB062856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : 0.62200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0 30% V/V JEFFAMINE REMARK 280 ED-2001 REAGENT PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.78300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 TRP A 13 REMARK 465 ASN A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 PRO A 19 REMARK 465 VAL A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 465 GLN A 23 REMARK 465 PHE A 24 REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 ILE A 27 REMARK 465 TYR A 28 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 GLN A 451 REMARK 465 GLN A 602 REMARK 465 HIS A 603 REMARK 465 GLY A 604 REMARK 465 GLY A 605 REMARK 465 GLU A 606 REMARK 465 SER A 607 REMARK 465 GLU A 608 REMARK 465 VAL A 609 REMARK 465 ARG A 675 REMARK 465 PRO A 676 REMARK 465 VAL A 677 REMARK 465 GLN A 678 REMARK 465 THR A 679 REMARK 465 ARG A 680 REMARK 465 SER A 681 REMARK 465 PRO A 682 REMARK 465 ALA A 683 REMARK 465 THR A 684 REMARK 465 GLN A 685 REMARK 465 GLU A 686 REMARK 465 SER A 687 REMARK 465 SER A 688 REMARK 465 ARG A 689 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 GLN A 235 CG CD OE1 NE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLN A 446 CG CD OE1 NE2 REMARK 470 ASN A 610 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 67 -45.44 -151.10 REMARK 500 TYR A 103 76.62 -118.17 REMARK 500 GLN A 235 -101.79 -53.54 REMARK 500 ARG A 237 153.10 61.29 REMARK 500 THR A 252 -168.85 -101.84 REMARK 500 ASP A 266 69.65 -155.57 REMARK 500 ASN A 316 -16.61 -143.54 REMARK 500 HIS A 349 156.77 179.90 REMARK 500 ALA A 397 -18.04 73.10 REMARK 500 HIS A 433 78.88 -116.59 REMARK 500 TYR A 505 -135.54 -134.48 REMARK 500 PRO A 579 170.83 -53.14 REMARK 500 PRO A 652 32.40 -90.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 690 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 691 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PS9 RELATED DB: PDB REMARK 900 SAME PROTEIN BUT FROM E. COLI AND LIGANDED WITH S-ADENOSYL- REMARK 900 L-METHIONINE REMARK 900 RELATED ID: NYSGRC-012591 RELATED DB: TARGETDB DBREF 3PVC A 1 689 UNP Q8ZD36 MNMC_YERPE 1 689 SEQRES 1 A 689 MSE ASN GLN ARG PRO ILE GLN THR ALA THR LEU SER TRP SEQRES 2 A 689 ASN GLU GLN GLY THR PRO VAL SER GLU GLN PHE GLY ASP SEQRES 3 A 689 ILE TYR PHE SER ASN GLU ASP GLY LEU GLU GLU THR HIS SEQRES 4 A 689 HIS VAL PHE LEU LYS GLY ASN GLY PHE PRO ALA ARG PHE SEQRES 5 A 689 ALA SER HIS PRO GLN GLN SER CYS ILE PHE ALA GLU THR SEQRES 6 A 689 GLY PHE GLY THR GLY LEU ASN PHE LEU THR LEU TRP ARG SEQRES 7 A 689 ASP PHE ALA LEU PHE ARG GLN GLN SER PRO ASN ALA THR SEQRES 8 A 689 LEU ARG ARG LEU HIS TYR ILE SER PHE GLU LYS TYR PRO SEQRES 9 A 689 LEU HIS VAL ALA ASP LEU ALA SER ALA HIS ALA ARG TRP SEQRES 10 A 689 PRO GLU LEU ALA SER PHE ALA GLU GLN LEU ARG ALA GLN SEQRES 11 A 689 TRP PRO LEU PRO LEU ALA GLY CYS HIS ARG ILE LEU LEU SEQRES 12 A 689 ALA ASP GLY ALA ILE THR LEU ASP LEU TRP PHE GLY ASP SEQRES 13 A 689 VAL ASN THR LEU LEU PRO THR LEU ASP ASP SER LEU ASN SEQRES 14 A 689 ASN GLN VAL ASP ALA TRP PHE LEU ASP GLY PHE ALA PRO SEQRES 15 A 689 ALA LYS ASN PRO ASP MSE TRP ASN GLU GLN LEU PHE ASN SEQRES 16 A 689 ALA MSE ALA ARG MSE THR ARG PRO GLY GLY THR PHE SER SEQRES 17 A 689 THR PHE THR ALA ALA GLY PHE VAL ARG ARG GLY LEU GLN SEQRES 18 A 689 GLN ALA GLY PHE ASN VAL THR LYS VAL LYS GLY PHE GLY SEQRES 19 A 689 GLN LYS ARG GLU MSE LEU THR GLY THR LEU PRO GLN GLN SEQRES 20 A 689 ILE HIS ALA PRO THR ALA PRO TRP TYR HIS ARG PRO ALA SEQRES 21 A 689 ALA THR ARG CYS ASP ASP ILE ALA ILE ILE GLY GLY GLY SEQRES 22 A 689 ILE VAL SER ALA LEU THR ALA LEU ALA LEU GLN ARG ARG SEQRES 23 A 689 GLY ALA VAL VAL THR LEU TYR CYS ALA ASP ALA GLN PRO SEQRES 24 A 689 ALA GLN GLY ALA SER GLY ASN ARG GLN GLY ALA LEU TYR SEQRES 25 A 689 PRO LEU LEU ASN GLY LYS ASN ASP ALA LEU GLU THR PHE SEQRES 26 A 689 PHE THR SER ALA PHE THR PHE ALA ARG ARG GLN TYR ASP SEQRES 27 A 689 GLN LEU LEU GLU GLN GLY ILE ALA PHE ASP HIS GLN TRP SEQRES 28 A 689 CYS GLY VAL SER GLN LEU ALA PHE ASP ASP LYS SER ARG SEQRES 29 A 689 GLY LYS ILE GLU LYS MSE LEU HIS THR GLN TRP PRO VAL SEQRES 30 A 689 GLU PHE ALA GLU ALA MSE SER ARG GLU GLN LEU SER GLU SEQRES 31 A 689 LEU ALA GLY LEU ASP CYS ALA HIS ASP GLY ILE HIS TYR SEQRES 32 A 689 PRO ALA GLY GLY TRP LEU CYS PRO SER ASP LEU THR HIS SEQRES 33 A 689 ALA LEU MSE MSE LEU ALA GLN GLN ASN GLY MSE THR CYS SEQRES 34 A 689 HIS TYR GLN HIS GLU LEU GLN ARG LEU LYS ARG ILE ASP SEQRES 35 A 689 SER GLN TRP GLN LEU THR PHE GLY GLN SER GLN ALA ALA SEQRES 36 A 689 LYS HIS HIS ALA THR VAL ILE LEU ALA THR GLY HIS ARG SEQRES 37 A 689 LEU PRO GLU TRP GLU GLN THR HIS HIS LEU PRO LEU SER SEQRES 38 A 689 ALA VAL ARG GLY GLN VAL SER HIS ILE PRO THR THR PRO SEQRES 39 A 689 VAL LEU SER GLN LEU GLN GLN VAL LEU CYS TYR ASP GLY SEQRES 40 A 689 TYR LEU THR PRO VAL ASN PRO ALA ASN GLN HIS HIS CYS SEQRES 41 A 689 ILE GLY ALA SER TYR GLN ARG GLY ASP ILE ALA THR ASP SEQRES 42 A 689 PHE ARG LEU THR GLU GLN GLN GLU ASN ARG GLU ARG LEU SEQRES 43 A 689 LEU ARG CYS LEU PRO GLN VAL SER TRP PRO GLN GLN VAL SEQRES 44 A 689 ASP VAL SER ASP ASN GLN ALA ARG CYS GLY VAL ARG CYS SEQRES 45 A 689 ALA ILE ARG ASP HIS LEU PRO MSE VAL GLY ALA VAL PRO SEQRES 46 A 689 ASP TYR ALA ALA THR LEU ALA GLN TYR GLN ASP LEU SER SEQRES 47 A 689 ARG ARG ILE GLN HIS GLY GLY GLU SER GLU VAL ASN ASP SEQRES 48 A 689 ILE ALA VAL ALA PRO VAL TRP PRO GLU LEU PHE MSE VAL SEQRES 49 A 689 GLY GLY LEU GLY SER ARG GLY LEU CYS SER ALA PRO LEU SEQRES 50 A 689 VAL ALA GLU ILE LEU ALA ALA GLN MSE PHE GLY GLU PRO SEQRES 51 A 689 LEU PRO LEU ASP ALA LYS THR LEU ALA ALA LEU ASN PRO SEQRES 52 A 689 ASN ARG PHE TRP ILE ARG LYS LEU LEU LYS GLY ARG PRO SEQRES 53 A 689 VAL GLN THR ARG SER PRO ALA THR GLN GLU SER SER ARG MODRES 3PVC MSE A 188 MET SELENOMETHIONINE MODRES 3PVC MSE A 197 MET SELENOMETHIONINE MODRES 3PVC MSE A 200 MET SELENOMETHIONINE MODRES 3PVC MSE A 239 MET SELENOMETHIONINE MODRES 3PVC MSE A 370 MET SELENOMETHIONINE MODRES 3PVC MSE A 383 MET SELENOMETHIONINE MODRES 3PVC MSE A 419 MET SELENOMETHIONINE MODRES 3PVC MSE A 420 MET SELENOMETHIONINE MODRES 3PVC MSE A 427 MET SELENOMETHIONINE MODRES 3PVC MSE A 580 MET SELENOMETHIONINE MODRES 3PVC MSE A 623 MET SELENOMETHIONINE MODRES 3PVC MSE A 646 MET SELENOMETHIONINE HET MSE A 188 8 HET MSE A 197 8 HET MSE A 200 8 HET MSE A 239 8 HET MSE A 370 8 HET MSE A 383 8 HET MSE A 419 8 HET MSE A 420 8 HET MSE A 427 8 HET MSE A 580 8 HET MSE A 623 8 HET MSE A 646 8 HET FAD A 690 53 HET CL A 691 1 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 CL CL 1- FORMUL 4 HOH *171(H2 O) HELIX 1 1 GLY A 34 PHE A 42 1 9 HELIX 2 2 PRO A 49 HIS A 55 1 7 HELIX 3 3 GLY A 70 SER A 87 1 18 HELIX 4 4 HIS A 106 ALA A 115 1 10 HELIX 5 5 ARG A 116 GLU A 119 5 4 HELIX 6 6 LEU A 120 GLN A 130 1 11 HELIX 7 7 ASP A 156 LEU A 161 1 6 HELIX 8 8 PRO A 162 LEU A 164 5 3 HELIX 9 9 ASP A 165 ASN A 169 5 5 HELIX 10 10 ASN A 190 MSE A 200 1 11 HELIX 11 11 ALA A 213 ALA A 223 1 11 HELIX 12 12 ALA A 253 HIS A 257 5 5 HELIX 13 13 GLY A 273 ARG A 285 1 13 HELIX 14 14 GLY A 302 ASN A 306 5 5 HELIX 15 15 ASP A 320 GLN A 343 1 24 HELIX 16 16 ASP A 360 LEU A 371 1 12 HELIX 17 17 SER A 384 GLY A 393 1 10 HELIX 18 18 CYS A 410 ASN A 425 1 16 HELIX 19 19 THR A 465 LEU A 469 5 5 HELIX 20 20 VAL A 495 LEU A 499 5 5 HELIX 21 21 ARG A 535 LEU A 550 1 16 HELIX 22 22 SER A 554 VAL A 559 5 6 HELIX 23 23 ASP A 586 TYR A 594 1 9 HELIX 24 24 ASP A 596 ILE A 601 1 6 HELIX 25 25 ARG A 630 PHE A 647 1 18 HELIX 26 26 ASP A 654 ALA A 660 1 7 HELIX 27 27 ASN A 664 LEU A 672 1 9 SHEET 1 A 8 GLY A 137 LEU A 143 0 SHEET 2 A 8 ILE A 148 PHE A 154 -1 O ILE A 148 N LEU A 143 SHEET 3 A 8 ARG A 94 GLU A 101 1 N SER A 99 O TRP A 153 SHEET 4 A 8 SER A 59 THR A 65 1 N PHE A 62 O HIS A 96 SHEET 5 A 8 VAL A 172 LEU A 177 1 O PHE A 176 N ALA A 63 SHEET 6 A 8 THR A 201 THR A 209 1 O ARG A 202 N VAL A 172 SHEET 7 A 8 GLU A 238 THR A 243 -1 O LEU A 240 N THR A 209 SHEET 8 A 8 ASN A 226 LYS A 231 -1 N THR A 228 O THR A 241 SHEET 1 B 6 THR A 428 TYR A 431 0 SHEET 2 B 6 VAL A 290 CYS A 294 1 N LEU A 292 O HIS A 430 SHEET 3 B 6 ILE A 267 ILE A 270 1 N ILE A 269 O THR A 291 SHEET 4 B 6 THR A 460 LEU A 463 1 O ILE A 462 N ILE A 270 SHEET 5 B 6 VAL A 617 GLY A 625 1 O PHE A 622 N LEU A 463 SHEET 6 B 6 MSE A 580 PRO A 585 -1 N MSE A 580 O GLY A 625 SHEET 1 C 3 GLY A 309 LEU A 311 0 SHEET 2 C 3 GLY A 407 LEU A 409 -1 O GLY A 407 N LEU A 311 SHEET 3 C 3 HIS A 349 GLN A 350 -1 N GLN A 350 O TRP A 408 SHEET 1 D 8 GLU A 381 MSE A 383 0 SHEET 2 D 8 GLY A 400 TYR A 403 -1 O GLY A 400 N MSE A 383 SHEET 3 D 8 VAL A 354 LEU A 357 -1 N VAL A 354 O TYR A 403 SHEET 4 D 8 VAL A 502 CYS A 504 1 O VAL A 502 N SER A 355 SHEET 5 D 8 TYR A 508 LEU A 509 -1 O LEU A 509 N LEU A 503 SHEET 6 D 8 HIS A 518 GLY A 522 -1 O GLY A 522 N TYR A 508 SHEET 7 D 8 SER A 481 PRO A 491 -1 N ILE A 490 O HIS A 519 SHEET 8 D 8 GLN A 526 ARG A 527 -1 O GLN A 526 N ARG A 484 SHEET 1 E 8 GLU A 381 MSE A 383 0 SHEET 2 E 8 GLY A 400 TYR A 403 -1 O GLY A 400 N MSE A 383 SHEET 3 E 8 VAL A 354 LEU A 357 -1 N VAL A 354 O TYR A 403 SHEET 4 E 8 VAL A 502 CYS A 504 1 O VAL A 502 N SER A 355 SHEET 5 E 8 TYR A 508 LEU A 509 -1 O LEU A 509 N LEU A 503 SHEET 6 E 8 HIS A 518 GLY A 522 -1 O GLY A 522 N TYR A 508 SHEET 7 E 8 SER A 481 PRO A 491 -1 N ILE A 490 O HIS A 519 SHEET 8 E 8 ALA A 566 ALA A 573 -1 O ARG A 567 N VAL A 487 SHEET 1 F 3 LEU A 435 ARG A 440 0 SHEET 2 F 3 TRP A 445 PHE A 449 -1 O THR A 448 N GLN A 436 SHEET 3 F 3 LYS A 456 HIS A 458 -1 O HIS A 458 N TRP A 445 LINK C ASP A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N TRP A 189 1555 1555 1.32 LINK C ALA A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N ALA A 198 1555 1555 1.32 LINK C ARG A 199 N MSE A 200 1555 1555 1.34 LINK C MSE A 200 N THR A 201 1555 1555 1.33 LINK C GLU A 238 N MSE A 239 1555 1555 1.32 LINK C MSE A 239 N LEU A 240 1555 1555 1.33 LINK C LYS A 369 N MSE A 370 1555 1555 1.34 LINK C MSE A 370 N LEU A 371 1555 1555 1.34 LINK C ALA A 382 N MSE A 383 1555 1555 1.32 LINK C MSE A 383 N SER A 384 1555 1555 1.32 LINK C LEU A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N MSE A 420 1555 1555 1.33 LINK C MSE A 420 N LEU A 421 1555 1555 1.33 LINK C GLY A 426 N MSE A 427 1555 1555 1.32 LINK C MSE A 427 N THR A 428 1555 1555 1.32 LINK C PRO A 579 N MSE A 580 1555 1555 1.32 LINK C MSE A 580 N VAL A 581 1555 1555 1.33 LINK C PHE A 622 N MSE A 623 1555 1555 1.33 LINK C MSE A 623 N VAL A 624 1555 1555 1.33 LINK C GLN A 645 N MSE A 646 1555 1555 1.32 LINK C MSE A 646 N PHE A 647 1555 1555 1.33 CISPEP 1 PHE A 48 PRO A 49 0 10.18 CISPEP 2 GLY A 522 ALA A 523 0 -6.61 SITE 1 AC1 37 ILE A 270 GLY A 271 GLY A 272 GLY A 273 SITE 2 AC1 37 ILE A 274 VAL A 275 ALA A 295 ASP A 296 SITE 3 AC1 37 ALA A 303 SER A 304 ASN A 306 ALA A 310 SITE 4 AC1 37 HIS A 433 GLU A 434 LEU A 435 ALA A 464 SITE 5 AC1 37 THR A 465 ARG A 468 GLY A 485 VAL A 487 SITE 6 AC1 37 TYR A 508 GLY A 569 LEU A 627 GLY A 628 SITE 7 AC1 37 SER A 629 ARG A 630 GLY A 631 LEU A 632 SITE 8 AC1 37 CL A 691 HOH A 721 HOH A 731 HOH A 758 SITE 9 AC1 37 HOH A 759 HOH A 761 HOH A 781 HOH A 815 SITE 10 AC1 37 HOH A 831 SITE 1 AC2 5 ASN A 306 GLY A 309 PRO A 411 FAD A 690 SITE 2 AC2 5 HOH A 756 CRYST1 65.146 59.566 99.630 90.00 99.57 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015350 0.000000 0.002587 0.00000 SCALE2 0.000000 0.016788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010179 0.00000