HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-DEC-10 3PVG TITLE CRYSTAL STRUCTURE OF Z. MAYS CK2 ALPHA SUBUNIT IN COMPLEX WITH THE TITLE 2 INHIBITOR 4,5,6,7-TETRABROMO-1-CARBOXYMETHYLBENZIMIDAZOLE (K68) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT; COMPND 5 SYNONYM: CK II, CK2-ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: ACK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN KINASE CK2-INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPINUTTO,C.FRANCHIN,R.BATTISTUTTA REVDAT 5 16-OCT-24 3PVG 1 REMARK LINK REVDAT 4 08-NOV-17 3PVG 1 REMARK REVDAT 3 15-JUN-11 3PVG 1 JRNL REVDAT 2 11-MAY-11 3PVG 1 JRNL REVDAT 1 15-DEC-10 3PVG 0 SPRSDE 15-DEC-10 3PVG 3KXJ JRNL AUTH S.SARNO,E.PAPINUTTO,C.FRANCHIN,J.BAIN,M.ELLIOTT,F.MEGGIO, JRNL AUTH 2 Z.KAZIMIERCZUK,A.ORZESZKO,G.ZANOTTI,R.BATTISTUTTA,L.A.PINNA JRNL TITL ATP SITE-DIRECTED INHIBITORS OF PROTEIN KINASE CK2: AN JRNL TITL 2 UPDATE. JRNL REF CURR TOP MED CHEM V. 11 1340 2011 JRNL REFN ISSN 1568-0266 JRNL PMID 21513497 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 57921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.985 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2840 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3848 ; 2.308 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ;12.568 ; 5.060 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;36.251 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;14.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2177 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1643 ; 1.397 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2665 ; 2.261 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 3.566 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 5.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8818 11.2418 9.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0656 REMARK 3 T33: 0.0940 T12: -0.0525 REMARK 3 T13: -0.0204 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.0189 L22: 0.7911 REMARK 3 L33: 1.9035 L12: 0.4881 REMARK 3 L13: 1.0619 L23: 0.7112 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: 0.1231 S13: 0.1494 REMARK 3 S21: 0.0300 S22: 0.0355 S23: -0.0689 REMARK 3 S31: -0.2235 S32: 0.2641 S33: 0.1113 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7092 -1.0417 10.5035 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0654 REMARK 3 T33: 0.0419 T12: 0.0088 REMARK 3 T13: -0.0077 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.4742 L22: 0.3868 REMARK 3 L33: 1.5453 L12: 0.1854 REMARK 3 L13: 0.4454 L23: -0.2848 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.1821 S13: 0.0691 REMARK 3 S21: 0.0288 S22: 0.0386 S23: -0.0426 REMARK 3 S31: -0.0504 S32: 0.0246 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8640 -17.9934 10.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0581 REMARK 3 T33: 0.1053 T12: -0.0119 REMARK 3 T13: -0.0445 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.9996 L22: 1.1569 REMARK 3 L33: 1.5547 L12: -0.6631 REMARK 3 L13: 0.4436 L23: -0.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.1602 S13: -0.2853 REMARK 3 S21: -0.1138 S22: 0.1158 S23: -0.0375 REMARK 3 S31: 0.2735 S32: -0.0251 S33: -0.1834 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5698 -21.5797 13.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.0913 REMARK 3 T33: 0.1425 T12: -0.0263 REMARK 3 T13: -0.0470 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: 3.6472 L22: 1.6580 REMARK 3 L33: 3.2751 L12: -1.3044 REMARK 3 L13: -1.6163 L23: 1.2616 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.2197 S13: -0.4866 REMARK 3 S21: 0.0270 S22: 0.1054 S23: 0.0642 REMARK 3 S31: 0.4309 S32: -0.0443 S33: -0.0672 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4720 -5.7683 6.1854 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.1142 REMARK 3 T33: 0.0361 T12: -0.0192 REMARK 3 T13: -0.0266 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.6713 L22: 1.1000 REMARK 3 L33: 1.3699 L12: -0.6991 REMARK 3 L13: 0.0535 L23: -0.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.1833 S13: -0.0487 REMARK 3 S21: -0.0308 S22: 0.1217 S23: 0.0548 REMARK 3 S31: 0.0296 S32: -0.2401 S33: -0.1343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 3PVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 69.547 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY IN AN REMARK 200 ISOMORPHOUS CELL REMARK 200 SOFTWARE USED: RIGID BODY IN AN ISOMORPHOUS CELL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2M NA-ACETATE, 0.1M REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.43800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.43800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 ARG A 336 REMARK 465 ALA A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O32 K68 A 1 O HOH A 439 1.83 REMARK 500 O LEU A 292 O HOH A 502 2.13 REMARK 500 O HOH A 443 O HOH A 581 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 406 O HOH A 515 4546 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 221 SD MET A 221 CE -0.397 REMARK 500 SER A 294 CB SER A 294 OG 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 18 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 102 CB - CG - CD ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 312 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 112.12 -32.10 REMARK 500 ASP A 156 45.89 -154.95 REMARK 500 ASP A 175 75.86 54.77 REMARK 500 ALA A 193 171.19 56.88 REMARK 500 ASP A 208 59.78 -94.45 REMARK 500 TYR A 234 74.38 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K68 A 1 DBREF 3PVG A 7 337 UNP P28523 CSK2A_MAIZE 2 332 SEQRES 1 A 331 SER LYS ALA ARG VAL TYR ALA ASP VAL ASN VAL LEU ARG SEQRES 2 A 331 PRO LYS GLU TYR TRP ASP TYR GLU ALA LEU THR VAL GLN SEQRES 3 A 331 TRP GLY GLU GLN ASP ASP TYR GLU VAL VAL ARG LYS VAL SEQRES 4 A 331 GLY ARG GLY LYS TYR SER GLU VAL PHE GLU GLY ILE ASN SEQRES 5 A 331 VAL ASN ASN ASN GLU LYS CYS ILE ILE LYS ILE LEU LYS SEQRES 6 A 331 PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU ILE LYS ILE SEQRES 7 A 331 LEU GLN ASN LEU CSO GLY GLY PRO ASN ILE VAL LYS LEU SEQRES 8 A 331 LEU ASP ILE VAL ARG ASP GLN HIS SER LYS THR PRO SER SEQRES 9 A 331 LEU ILE PHE GLU TYR VAL ASN ASN THR ASP PHE LYS VAL SEQRES 10 A 331 LEU TYR PRO THR LEU THR ASP TYR ASP ILE ARG TYR TYR SEQRES 11 A 331 ILE TYR GLU LEU LEU LYS ALA LEU ASP TYR CYS HIS SER SEQRES 12 A 331 GLN GLY ILE MET HIS ARG ASP VAL LYS PRO HIS ASN VAL SEQRES 13 A 331 MET ILE ASP HIS GLU LEU ARG LYS LEU ARG LEU ILE ASP SEQRES 14 A 331 TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY LYS GLU TYR SEQRES 15 A 331 ASN VAL ARG VAL ALA SER ARG TYR PHE LYS GLY PRO GLU SEQRES 16 A 331 LEU LEU VAL ASP LEU GLN ASP TYR ASP TYR SER LEU ASP SEQRES 17 A 331 MET TRP SER LEU GLY CYS MET PHE ALA GLY MET ILE PHE SEQRES 18 A 331 ARG LYS GLU PRO PHE PHE TYR GLY HIS ASP ASN HIS ASP SEQRES 19 A 331 GLN LEU VAL LYS ILE ALA LYS VAL LEU GLY THR ASP GLY SEQRES 20 A 331 LEU ASN VAL TYR LEU ASN LYS TYR ARG ILE GLU LEU ASP SEQRES 21 A 331 PRO GLN LEU GLU ALA LEU VAL GLY ARG HIS SER ARG LYS SEQRES 22 A 331 PRO TRP LEU LYS PHE MET ASN ALA ASP ASN GLN HIS LEU SEQRES 23 A 331 VAL SER PRO GLU ALA ILE ASP PHE LEU ASP LYS LEU LEU SEQRES 24 A 331 ARG TYR ASP HIS GLN GLU ARG LEU THR ALA LEU GLU ALA SEQRES 25 A 331 MET THR HIS PRO TYR PHE GLN GLN VAL ARG ALA ALA GLU SEQRES 26 A 331 ASN SER ARG THR ARG ALA MODRES 3PVG CSO A 89 CYS S-HYDROXYCYSTEINE HET CSO A 89 7 HET K68 A 1 17 HETNAM CSO S-HYDROXYCYSTEINE HETNAM K68 (4,5,6,7-TETRABROMO-1H-BENZIMIDAZOL-1-YL)ACETIC ACID FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 K68 C9 H4 BR4 N2 O2 FORMUL 3 HOH *279(H2 O) HELIX 1 1 ASP A 14 ARG A 19 1 6 HELIX 2 2 PRO A 20 ASP A 25 1 6 HELIX 3 3 TYR A 26 LEU A 29 5 4 HELIX 4 4 GLU A 35 ASP A 37 5 3 HELIX 5 5 LYS A 74 CSO A 89 1 16 HELIX 6 6 ASP A 120 TYR A 125 1 6 HELIX 7 7 PRO A 126 LEU A 128 5 3 HELIX 8 8 THR A 129 GLN A 150 1 22 HELIX 9 9 LYS A 158 HIS A 160 5 3 HELIX 10 10 ASP A 175 ALA A 179 5 5 HELIX 11 11 SER A 194 LYS A 198 5 5 HELIX 12 12 GLY A 199 ASP A 205 1 7 HELIX 13 13 TYR A 211 ARG A 228 1 18 HELIX 14 14 ASP A 237 GLY A 250 1 14 HELIX 15 15 GLY A 250 ARG A 262 1 13 HELIX 16 16 ASP A 266 GLY A 274 1 9 HELIX 17 17 PRO A 280 MET A 285 5 6 HELIX 18 18 SER A 294 LEU A 305 1 12 HELIX 19 19 ASP A 308 ARG A 312 5 5 HELIX 20 20 THR A 314 HIS A 321 1 8 HELIX 21 21 PHE A 324 SER A 333 1 10 SHEET 1 A 5 TYR A 39 ARG A 47 0 SHEET 2 A 5 SER A 51 ASN A 58 -1 O GLU A 55 N VAL A 42 SHEET 3 A 5 LYS A 64 LEU A 70 -1 O ILE A 67 N PHE A 54 SHEET 4 A 5 PRO A 109 GLU A 114 -1 O LEU A 111 N LYS A 68 SHEET 5 A 5 LEU A 97 ARG A 102 -1 N LEU A 98 O ILE A 112 SHEET 1 B 2 ILE A 152 MET A 153 0 SHEET 2 B 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 C 2 VAL A 162 ASP A 165 0 SHEET 2 C 2 LYS A 170 LEU A 173 -1 O ARG A 172 N MET A 163 LINK C LEU A 88 N CSO A 89 1555 1555 1.35 LINK C CSO A 89 N GLY A 90 1555 1555 1.32 CISPEP 1 GLU A 230 PRO A 231 0 -12.41 SITE 1 AC1 8 VAL A 53 ILE A 66 LYS A 68 VAL A 116 SITE 2 AC1 8 MET A 163 ILE A 174 ASP A 175 HOH A 439 CRYST1 142.876 60.041 45.046 90.00 103.21 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006999 0.000000 0.001643 0.00000 SCALE2 0.000000 0.016655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022803 0.00000