data_3PVP # _entry.id 3PVP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PVP pdb_00003pvp 10.2210/pdb3pvp/pdb NDB NA0857 ? ? RCSB RCSB062868 ? ? WWPDB D_1000062868 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PVP _pdbx_database_status.recvd_initial_deposition_date 2010-12-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3PVV _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsodikov, O.V.' 1 'Biswas, T.' 2 # _citation.id primary _citation.title 'Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 410 _citation.page_first 461 _citation.page_last 476 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21620858 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.05.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsodikov, O.V.' 1 ? primary 'Biswas, T.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromosomal replication initiator protein dnaA' 11574.367 2 ? ? 'DnaA DBD' ? 2 polymer syn ;DNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3') ; 3895.563 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3') ; 4046.645 2 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPHMISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE RREVFDHVKELTTRIRQRSKR ; ;GPHMISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE RREVFDHVKELTTRIRQRSKR ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DT)(DA)(DT)(DC)(DC)(DA)(DC)(DA)(DA)(DC)' CGTTATCCACAAC C,E ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DG)(DT)(DG)(DG)(DA)(DT)(DA)(DA)(DC)(DG)' GTTGTGGATAACG D,F ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 ILE n 1 6 SER n 1 7 ALA n 1 8 ALA n 1 9 THR n 1 10 ILE n 1 11 MET n 1 12 ALA n 1 13 ALA n 1 14 THR n 1 15 ALA n 1 16 GLU n 1 17 TYR n 1 18 PHE n 1 19 ASP n 1 20 THR n 1 21 THR n 1 22 VAL n 1 23 GLU n 1 24 GLU n 1 25 LEU n 1 26 ARG n 1 27 GLY n 1 28 PRO n 1 29 GLY n 1 30 LYS n 1 31 THR n 1 32 ARG n 1 33 ALA n 1 34 LEU n 1 35 ALA n 1 36 GLN n 1 37 SER n 1 38 ARG n 1 39 GLN n 1 40 ILE n 1 41 ALA n 1 42 MET n 1 43 TYR n 1 44 LEU n 1 45 CYS n 1 46 ARG n 1 47 GLU n 1 48 LEU n 1 49 THR n 1 50 ASP n 1 51 LEU n 1 52 SER n 1 53 LEU n 1 54 PRO n 1 55 LYS n 1 56 ILE n 1 57 GLY n 1 58 GLN n 1 59 ALA n 1 60 PHE n 1 61 GLY n 1 62 ARG n 1 63 ASP n 1 64 HIS n 1 65 THR n 1 66 THR n 1 67 VAL n 1 68 MET n 1 69 TYR n 1 70 ALA n 1 71 GLN n 1 72 ARG n 1 73 LYS n 1 74 ILE n 1 75 LEU n 1 76 SER n 1 77 GLU n 1 78 MET n 1 79 ALA n 1 80 GLU n 1 81 ARG n 1 82 ARG n 1 83 GLU n 1 84 VAL n 1 85 PHE n 1 86 ASP n 1 87 HIS n 1 88 VAL n 1 89 LYS n 1 90 GLU n 1 91 LEU n 1 92 THR n 1 93 THR n 1 94 ARG n 1 95 ILE n 1 96 ARG n 1 97 GLN n 1 98 ARG n 1 99 SER n 1 100 LYS n 1 101 ARG n 2 1 DC n 2 2 DG n 2 3 DT n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DC n 2 11 DA n 2 12 DA n 2 13 DC n 3 1 DG n 3 2 DT n 3 3 DT n 3 4 DG n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DA n 3 9 DT n 3 10 DA n 3 11 DA n 3 12 DC n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dnaA, MRA_0001, Rv0001' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25177 / H37Ra' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 419947 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 407 ? ? ? A . n A 1 2 PRO 2 408 ? ? ? A . n A 1 3 HIS 3 409 ? ? ? A . n A 1 4 MET 4 410 ? ? ? A . n A 1 5 ILE 5 411 411 ILE ILE A . n A 1 6 SER 6 412 412 SER SER A . n A 1 7 ALA 7 413 413 ALA ALA A . n A 1 8 ALA 8 414 414 ALA ALA A . n A 1 9 THR 9 415 415 THR THR A . n A 1 10 ILE 10 416 416 ILE ILE A . n A 1 11 MET 11 417 417 MET MET A . n A 1 12 ALA 12 418 418 ALA ALA A . n A 1 13 ALA 13 419 419 ALA ALA A . n A 1 14 THR 14 420 420 THR THR A . n A 1 15 ALA 15 421 421 ALA ALA A . n A 1 16 GLU 16 422 422 GLU GLU A . n A 1 17 TYR 17 423 423 TYR TYR A . n A 1 18 PHE 18 424 424 PHE PHE A . n A 1 19 ASP 19 425 425 ASP ASP A . n A 1 20 THR 20 426 426 THR THR A . n A 1 21 THR 21 427 427 THR THR A . n A 1 22 VAL 22 428 428 VAL VAL A . n A 1 23 GLU 23 429 429 GLU GLU A . n A 1 24 GLU 24 430 430 GLU GLU A . n A 1 25 LEU 25 431 431 LEU LEU A . n A 1 26 ARG 26 432 432 ARG ARG A . n A 1 27 GLY 27 433 433 GLY GLY A . n A 1 28 PRO 28 434 434 PRO PRO A . n A 1 29 GLY 29 435 435 GLY GLY A . n A 1 30 LYS 30 436 436 LYS LYS A . n A 1 31 THR 31 437 437 THR THR A . n A 1 32 ARG 32 438 438 ARG ARG A . n A 1 33 ALA 33 439 439 ALA ALA A . n A 1 34 LEU 34 440 440 LEU LEU A . n A 1 35 ALA 35 441 441 ALA ALA A . n A 1 36 GLN 36 442 442 GLN GLN A . n A 1 37 SER 37 443 443 SER SER A . n A 1 38 ARG 38 444 444 ARG ARG A . n A 1 39 GLN 39 445 445 GLN GLN A . n A 1 40 ILE 40 446 446 ILE ILE A . n A 1 41 ALA 41 447 447 ALA ALA A . n A 1 42 MET 42 448 448 MET MET A . n A 1 43 TYR 43 449 449 TYR TYR A . n A 1 44 LEU 44 450 450 LEU LEU A . n A 1 45 CYS 45 451 451 CYS CYS A . n A 1 46 ARG 46 452 452 ARG ARG A . n A 1 47 GLU 47 453 453 GLU GLU A . n A 1 48 LEU 48 454 454 LEU LEU A . n A 1 49 THR 49 455 455 THR THR A . n A 1 50 ASP 50 456 456 ASP ASP A . n A 1 51 LEU 51 457 457 LEU LEU A . n A 1 52 SER 52 458 458 SER SER A . n A 1 53 LEU 53 459 459 LEU LEU A . n A 1 54 PRO 54 460 460 PRO PRO A . n A 1 55 LYS 55 461 461 LYS LYS A . n A 1 56 ILE 56 462 462 ILE ILE A . n A 1 57 GLY 57 463 463 GLY GLY A . n A 1 58 GLN 58 464 464 GLN GLN A . n A 1 59 ALA 59 465 465 ALA ALA A . n A 1 60 PHE 60 466 466 PHE PHE A . n A 1 61 GLY 61 467 467 GLY GLY A . n A 1 62 ARG 62 468 468 ARG ARG A . n A 1 63 ASP 63 469 469 ASP ASP A . n A 1 64 HIS 64 470 470 HIS HIS A . n A 1 65 THR 65 471 471 THR THR A . n A 1 66 THR 66 472 472 THR THR A . n A 1 67 VAL 67 473 473 VAL VAL A . n A 1 68 MET 68 474 474 MET MET A . n A 1 69 TYR 69 475 475 TYR TYR A . n A 1 70 ALA 70 476 476 ALA ALA A . n A 1 71 GLN 71 477 477 GLN GLN A . n A 1 72 ARG 72 478 478 ARG ARG A . n A 1 73 LYS 73 479 479 LYS LYS A . n A 1 74 ILE 74 480 480 ILE ILE A . n A 1 75 LEU 75 481 481 LEU LEU A . n A 1 76 SER 76 482 482 SER SER A . n A 1 77 GLU 77 483 483 GLU GLU A . n A 1 78 MET 78 484 484 MET MET A . n A 1 79 ALA 79 485 485 ALA ALA A . n A 1 80 GLU 80 486 486 GLU GLU A . n A 1 81 ARG 81 487 487 ARG ARG A . n A 1 82 ARG 82 488 488 ARG ARG A . n A 1 83 GLU 83 489 489 GLU GLU A . n A 1 84 VAL 84 490 490 VAL VAL A . n A 1 85 PHE 85 491 491 PHE PHE A . n A 1 86 ASP 86 492 492 ASP ASP A . n A 1 87 HIS 87 493 493 HIS HIS A . n A 1 88 VAL 88 494 494 VAL VAL A . n A 1 89 LYS 89 495 495 LYS LYS A . n A 1 90 GLU 90 496 496 GLU GLU A . n A 1 91 LEU 91 497 497 LEU LEU A . n A 1 92 THR 92 498 498 THR THR A . n A 1 93 THR 93 499 499 THR THR A . n A 1 94 ARG 94 500 500 ARG ARG A . n A 1 95 ILE 95 501 501 ILE ILE A . n A 1 96 ARG 96 502 502 ARG ARG A . n A 1 97 GLN 97 503 503 GLN GLN A . n A 1 98 ARG 98 504 504 ARG ARG A . n A 1 99 SER 99 505 505 SER SER A . n A 1 100 LYS 100 506 506 LYS LYS A . n A 1 101 ARG 101 507 ? ? ? A . n B 1 1 GLY 1 407 ? ? ? B . n B 1 2 PRO 2 408 ? ? ? B . n B 1 3 HIS 3 409 ? ? ? B . n B 1 4 MET 4 410 ? ? ? B . n B 1 5 ILE 5 411 411 ILE ILE B . n B 1 6 SER 6 412 412 SER SER B . n B 1 7 ALA 7 413 413 ALA ALA B . n B 1 8 ALA 8 414 414 ALA ALA B . n B 1 9 THR 9 415 415 THR THR B . n B 1 10 ILE 10 416 416 ILE ILE B . n B 1 11 MET 11 417 417 MET MET B . n B 1 12 ALA 12 418 418 ALA ALA B . n B 1 13 ALA 13 419 419 ALA ALA B . n B 1 14 THR 14 420 420 THR THR B . n B 1 15 ALA 15 421 421 ALA ALA B . n B 1 16 GLU 16 422 422 GLU GLU B . n B 1 17 TYR 17 423 423 TYR TYR B . n B 1 18 PHE 18 424 424 PHE PHE B . n B 1 19 ASP 19 425 425 ASP ASP B . n B 1 20 THR 20 426 426 THR THR B . n B 1 21 THR 21 427 427 THR THR B . n B 1 22 VAL 22 428 428 VAL VAL B . n B 1 23 GLU 23 429 429 GLU GLU B . n B 1 24 GLU 24 430 430 GLU GLU B . n B 1 25 LEU 25 431 431 LEU LEU B . n B 1 26 ARG 26 432 432 ARG ARG B . n B 1 27 GLY 27 433 433 GLY GLY B . n B 1 28 PRO 28 434 434 PRO PRO B . n B 1 29 GLY 29 435 435 GLY GLY B . n B 1 30 LYS 30 436 436 LYS LYS B . n B 1 31 THR 31 437 437 THR THR B . n B 1 32 ARG 32 438 438 ARG ARG B . n B 1 33 ALA 33 439 439 ALA ALA B . n B 1 34 LEU 34 440 440 LEU LEU B . n B 1 35 ALA 35 441 441 ALA ALA B . n B 1 36 GLN 36 442 442 GLN GLN B . n B 1 37 SER 37 443 443 SER SER B . n B 1 38 ARG 38 444 444 ARG ARG B . n B 1 39 GLN 39 445 445 GLN GLN B . n B 1 40 ILE 40 446 446 ILE ILE B . n B 1 41 ALA 41 447 447 ALA ALA B . n B 1 42 MET 42 448 448 MET MET B . n B 1 43 TYR 43 449 449 TYR TYR B . n B 1 44 LEU 44 450 450 LEU LEU B . n B 1 45 CYS 45 451 451 CYS CYS B . n B 1 46 ARG 46 452 452 ARG ARG B . n B 1 47 GLU 47 453 453 GLU GLU B . n B 1 48 LEU 48 454 454 LEU LEU B . n B 1 49 THR 49 455 455 THR THR B . n B 1 50 ASP 50 456 456 ASP ASP B . n B 1 51 LEU 51 457 457 LEU LEU B . n B 1 52 SER 52 458 458 SER SER B . n B 1 53 LEU 53 459 459 LEU LEU B . n B 1 54 PRO 54 460 460 PRO PRO B . n B 1 55 LYS 55 461 461 LYS LYS B . n B 1 56 ILE 56 462 462 ILE ILE B . n B 1 57 GLY 57 463 463 GLY GLY B . n B 1 58 GLN 58 464 464 GLN GLN B . n B 1 59 ALA 59 465 465 ALA ALA B . n B 1 60 PHE 60 466 466 PHE PHE B . n B 1 61 GLY 61 467 467 GLY GLY B . n B 1 62 ARG 62 468 468 ARG ARG B . n B 1 63 ASP 63 469 469 ASP ASP B . n B 1 64 HIS 64 470 470 HIS HIS B . n B 1 65 THR 65 471 471 THR THR B . n B 1 66 THR 66 472 472 THR THR B . n B 1 67 VAL 67 473 473 VAL VAL B . n B 1 68 MET 68 474 474 MET MET B . n B 1 69 TYR 69 475 475 TYR TYR B . n B 1 70 ALA 70 476 476 ALA ALA B . n B 1 71 GLN 71 477 477 GLN GLN B . n B 1 72 ARG 72 478 478 ARG ARG B . n B 1 73 LYS 73 479 479 LYS LYS B . n B 1 74 ILE 74 480 480 ILE ILE B . n B 1 75 LEU 75 481 481 LEU LEU B . n B 1 76 SER 76 482 482 SER SER B . n B 1 77 GLU 77 483 483 GLU GLU B . n B 1 78 MET 78 484 484 MET MET B . n B 1 79 ALA 79 485 485 ALA ALA B . n B 1 80 GLU 80 486 486 GLU GLU B . n B 1 81 ARG 81 487 487 ARG ARG B . n B 1 82 ARG 82 488 488 ARG ARG B . n B 1 83 GLU 83 489 489 GLU GLU B . n B 1 84 VAL 84 490 490 VAL VAL B . n B 1 85 PHE 85 491 491 PHE PHE B . n B 1 86 ASP 86 492 492 ASP ASP B . n B 1 87 HIS 87 493 493 HIS HIS B . n B 1 88 VAL 88 494 494 VAL VAL B . n B 1 89 LYS 89 495 495 LYS LYS B . n B 1 90 GLU 90 496 496 GLU GLU B . n B 1 91 LEU 91 497 497 LEU LEU B . n B 1 92 THR 92 498 498 THR THR B . n B 1 93 THR 93 499 499 THR THR B . n B 1 94 ARG 94 500 500 ARG ARG B . n B 1 95 ILE 95 501 501 ILE ILE B . n B 1 96 ARG 96 502 502 ARG ARG B . n B 1 97 GLN 97 503 503 GLN GLN B . n B 1 98 ARG 98 504 504 ARG ARG B . n B 1 99 SER 99 505 505 SER SER B . n B 1 100 LYS 100 506 ? ? ? B . n B 1 101 ARG 101 507 ? ? ? B . n C 2 1 DC 1 101 101 DC C C . n C 2 2 DG 2 102 102 DG G C . n C 2 3 DT 3 103 103 DT T C . n C 2 4 DT 4 104 104 DT T C . n C 2 5 DA 5 105 105 DA A C . n C 2 6 DT 6 106 106 DT T C . n C 2 7 DC 7 107 107 DC C C . n C 2 8 DC 8 108 108 DC C C . n C 2 9 DA 9 109 109 DA A C . n C 2 10 DC 10 110 110 DC C C . n C 2 11 DA 11 111 111 DA A C . n C 2 12 DA 12 112 112 DA A C . n C 2 13 DC 13 113 113 DC C C . n D 3 1 DG 1 201 201 DG G D . n D 3 2 DT 2 202 202 DT T D . n D 3 3 DT 3 203 203 DT T D . n D 3 4 DG 4 204 204 DG G D . n D 3 5 DT 5 205 205 DT T D . n D 3 6 DG 6 206 206 DG G D . n D 3 7 DG 7 207 207 DG G D . n D 3 8 DA 8 208 208 DA A D . n D 3 9 DT 9 209 209 DT T D . n D 3 10 DA 10 210 210 DA A D . n D 3 11 DA 11 211 211 DA A D . n D 3 12 DC 12 212 212 DC C D . n D 3 13 DG 13 213 213 DG G D . n E 2 1 DC 1 101 101 DC C E . n E 2 2 DG 2 102 102 DG G E . n E 2 3 DT 3 103 103 DT T E . n E 2 4 DT 4 104 104 DT T E . n E 2 5 DA 5 105 105 DA A E . n E 2 6 DT 6 106 106 DT T E . n E 2 7 DC 7 107 107 DC C E . n E 2 8 DC 8 108 108 DC C E . n E 2 9 DA 9 109 109 DA A E . n E 2 10 DC 10 110 110 DC C E . n E 2 11 DA 11 111 111 DA A E . n E 2 12 DA 12 112 112 DA A E . n E 2 13 DC 13 113 113 DC C E . n F 3 1 DG 1 201 201 DG G F . n F 3 2 DT 2 202 202 DT T F . n F 3 3 DT 3 203 203 DT T F . n F 3 4 DG 4 204 204 DG G F . n F 3 5 DT 5 205 205 DT T F . n F 3 6 DG 6 206 206 DG G F . n F 3 7 DG 7 207 207 DG G F . n F 3 8 DA 8 208 208 DA A F . n F 3 9 DT 9 209 209 DT T F . n F 3 10 DA 10 210 210 DA A F . n F 3 11 DA 11 211 211 DA A F . n F 3 12 DC 12 212 212 DC C F . n F 3 13 DG 13 213 213 DG G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 1 1 HOH HOH A . G 4 HOH 2 4 4 HOH HOH A . G 4 HOH 3 7 7 HOH HOH A . G 4 HOH 4 11 11 HOH HOH A . G 4 HOH 5 13 13 HOH HOH A . G 4 HOH 6 16 16 HOH HOH A . G 4 HOH 7 21 21 HOH HOH A . G 4 HOH 8 24 24 HOH HOH A . G 4 HOH 9 27 27 HOH HOH A . G 4 HOH 10 29 29 HOH HOH A . G 4 HOH 11 31 31 HOH HOH A . G 4 HOH 12 34 34 HOH HOH A . G 4 HOH 13 39 39 HOH HOH A . G 4 HOH 14 47 47 HOH HOH A . G 4 HOH 15 51 51 HOH HOH A . G 4 HOH 16 59 59 HOH HOH A . G 4 HOH 17 63 63 HOH HOH A . G 4 HOH 18 68 68 HOH HOH A . G 4 HOH 19 85 85 HOH HOH A . G 4 HOH 20 89 89 HOH HOH A . G 4 HOH 21 90 90 HOH HOH A . G 4 HOH 22 95 95 HOH HOH A . G 4 HOH 23 97 97 HOH HOH A . G 4 HOH 24 98 98 HOH HOH A . G 4 HOH 25 99 99 HOH HOH A . H 4 HOH 1 2 2 HOH HOH B . H 4 HOH 2 5 5 HOH HOH B . H 4 HOH 3 8 8 HOH HOH B . H 4 HOH 4 9 9 HOH HOH B . H 4 HOH 5 14 14 HOH HOH B . H 4 HOH 6 18 18 HOH HOH B . H 4 HOH 7 19 19 HOH HOH B . H 4 HOH 8 20 20 HOH HOH B . H 4 HOH 9 22 22 HOH HOH B . H 4 HOH 10 28 28 HOH HOH B . H 4 HOH 11 30 30 HOH HOH B . H 4 HOH 12 32 32 HOH HOH B . H 4 HOH 13 33 33 HOH HOH B . H 4 HOH 14 35 35 HOH HOH B . H 4 HOH 15 37 37 HOH HOH B . H 4 HOH 16 44 44 HOH HOH B . H 4 HOH 17 49 49 HOH HOH B . H 4 HOH 18 52 52 HOH HOH B . H 4 HOH 19 54 54 HOH HOH B . H 4 HOH 20 60 60 HOH HOH B . H 4 HOH 21 61 61 HOH HOH B . H 4 HOH 22 65 65 HOH HOH B . H 4 HOH 23 70 70 HOH HOH B . H 4 HOH 24 77 77 HOH HOH B . H 4 HOH 25 79 79 HOH HOH B . H 4 HOH 26 80 80 HOH HOH B . H 4 HOH 27 81 81 HOH HOH B . H 4 HOH 28 84 84 HOH HOH B . H 4 HOH 29 88 88 HOH HOH B . H 4 HOH 30 93 93 HOH HOH B . H 4 HOH 31 94 94 HOH HOH B . H 4 HOH 32 100 100 HOH HOH B . H 4 HOH 33 101 101 HOH HOH B . H 4 HOH 34 102 102 HOH HOH B . H 4 HOH 35 103 103 HOH HOH B . I 4 HOH 1 3 3 HOH HOH C . I 4 HOH 2 12 12 HOH HOH C . I 4 HOH 3 46 46 HOH HOH C . I 4 HOH 4 66 66 HOH HOH C . I 4 HOH 5 76 76 HOH HOH C . I 4 HOH 6 91 91 HOH HOH C . I 4 HOH 7 92 92 HOH HOH C . I 4 HOH 8 96 96 HOH HOH C . J 4 HOH 1 26 26 HOH HOH D . J 4 HOH 2 42 42 HOH HOH D . J 4 HOH 3 45 45 HOH HOH D . J 4 HOH 4 48 48 HOH HOH D . J 4 HOH 5 86 86 HOH HOH D . J 4 HOH 6 87 87 HOH HOH D . K 4 HOH 1 6 6 HOH HOH E . K 4 HOH 2 25 25 HOH HOH E . K 4 HOH 3 41 41 HOH HOH E . K 4 HOH 4 57 57 HOH HOH E . K 4 HOH 5 83 83 HOH HOH E . L 4 HOH 1 10 10 HOH HOH F . L 4 HOH 2 36 36 HOH HOH F . L 4 HOH 3 38 38 HOH HOH F . L 4 HOH 4 53 53 HOH HOH F . L 4 HOH 5 64 64 HOH HOH F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 486 ? CD ? A GLU 80 CD 2 1 Y 1 A GLU 486 ? OE1 ? A GLU 80 OE1 3 1 Y 1 A GLU 486 ? OE2 ? A GLU 80 OE2 4 1 Y 1 A LYS 506 ? CG ? A LYS 100 CG 5 1 Y 1 A LYS 506 ? CD ? A LYS 100 CD 6 1 Y 1 A LYS 506 ? CE ? A LYS 100 CE 7 1 Y 1 A LYS 506 ? NZ ? A LYS 100 NZ 8 1 Y 1 B GLU 429 ? OE1 ? B GLU 23 OE1 9 1 Y 1 B GLU 429 ? OE2 ? B GLU 23 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0088 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3PVP _cell.length_a 88.677 _cell.length_b 88.677 _cell.length_c 105.162 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PVP _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3PVP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_percent_sol 59.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '20 mM Tris, 2 mM MgCl2, 50 mM NaCl, 1200 mM NH4SO4, 2-5% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 NH4SO4 ? ? ? 1 5 1 glycerol ? ? ? 1 6 2 Tris ? ? ? 1 7 2 MgCl2 ? ? ? 1 8 2 NaCl ? ? ? 1 9 2 NH4SO4 ? ? ? 1 10 2 glycerol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3PVP _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 21973 _reflns.number_all ? _reflns.percent_possible_obs 87.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3PVP _refine.ls_number_reflns_obs 18916 _refine.ls_number_reflns_all 20594 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 91.85 _refine.ls_R_factor_obs 0.22184 _refine.ls_R_factor_all 0.222 _refine.ls_R_factor_R_work 0.22094 _refine.ls_R_factor_R_free 0.23821 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1034 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.215 _refine.overall_SU_ML 0.181 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1516 _refine_hist.pdbx_number_atoms_nucleic_acid 1054 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 2654 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 35.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 2714 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.924 2.449 ? 3874 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.030 5.000 ? 189 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.446 21.429 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.142 15.000 ? 293 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.294 15.000 ? 22 'X-RAY DIFFRACTION' ? r_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1670 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 919 _refine_ls_shell.R_factor_R_work 0.313 _refine_ls_shell.percent_reflns_obs 61.07 _refine_ls_shell.R_factor_R_free 0.346 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3PVP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3PVP _struct.title 'Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PVP _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'Helical, DNA replication, DNA binding, DnaA-box, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DNAA_MYCTA A5TY69 1 ;ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREV FDHVKELTTRIRQRSKR ; 411 ? 2 PDB 3PVP 3PVP 2 ? ? ? 3 PDB 3PVP 3PVP 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PVP A 5 ? 101 ? A5TY69 411 ? 507 ? 411 507 2 1 3PVP B 5 ? 101 ? A5TY69 411 ? 507 ? 411 507 3 2 3PVP C 1 ? 13 ? 3PVP 101 ? 113 ? 101 113 4 2 3PVP E 1 ? 13 ? 3PVP 101 ? 113 ? 101 113 5 3 3PVP D 1 ? 13 ? 3PVP 201 ? 213 ? 201 213 6 3 3PVP F 1 ? 13 ? 3PVP 201 ? 213 ? 201 213 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PVP GLY A 1 ? UNP A5TY69 ? ? 'expression tag' 407 1 1 3PVP PRO A 2 ? UNP A5TY69 ? ? 'expression tag' 408 2 1 3PVP HIS A 3 ? UNP A5TY69 ? ? 'expression tag' 409 3 1 3PVP MET A 4 ? UNP A5TY69 ? ? 'expression tag' 410 4 2 3PVP GLY B 1 ? UNP A5TY69 ? ? 'expression tag' 407 5 2 3PVP PRO B 2 ? UNP A5TY69 ? ? 'expression tag' 408 6 2 3PVP HIS B 3 ? UNP A5TY69 ? ? 'expression tag' 409 7 2 3PVP MET B 4 ? UNP A5TY69 ? ? 'expression tag' 410 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE -23 ? 1 'SSA (A^2)' 8890 ? 2 'ABSA (A^2)' 2970 ? 2 MORE -26 ? 2 'SSA (A^2)' 9130 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G,I,J 2 1 B,E,F,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? PHE A 18 ? SER A 412 PHE A 424 1 ? 13 HELX_P HELX_P2 2 THR A 21 ? GLY A 27 ? THR A 427 GLY A 433 1 ? 7 HELX_P HELX_P3 3 THR A 31 ? THR A 49 ? THR A 437 THR A 455 1 ? 19 HELX_P HELX_P4 4 SER A 52 ? PHE A 60 ? SER A 458 PHE A 466 1 ? 9 HELX_P HELX_P5 5 ASP A 63 ? ARG A 81 ? ASP A 469 ARG A 487 1 ? 19 HELX_P HELX_P6 6 ARG A 81 ? SER A 99 ? ARG A 487 SER A 505 1 ? 19 HELX_P HELX_P7 7 SER B 6 ? PHE B 18 ? SER B 412 PHE B 424 1 ? 13 HELX_P HELX_P8 8 THR B 21 ? GLY B 27 ? THR B 427 GLY B 433 1 ? 7 HELX_P HELX_P9 9 THR B 31 ? THR B 49 ? THR B 437 THR B 455 1 ? 19 HELX_P HELX_P10 10 SER B 52 ? GLY B 61 ? SER B 458 GLY B 467 1 ? 10 HELX_P HELX_P11 11 ASP B 63 ? ARG B 81 ? ASP B 469 ARG B 487 1 ? 19 HELX_P HELX_P12 12 ARG B 81 ? ARG B 98 ? ARG B 487 ARG B 504 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 13 N1 ? ? C DC 101 D DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 13 O6 ? ? C DC 101 D DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 13 N2 ? ? C DC 101 D DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 102 D DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 102 D DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 102 D DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 103 D DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 103 D DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 104 D DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 104 D DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 105 D DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 105 D DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 106 D DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 106 D DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 107 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 107 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 107 D DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 108 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 108 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 108 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 109 D DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 109 D DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 110 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 110 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 110 D DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 111 D DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 111 D DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 112 D DT 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 112 D DT 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 113 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 113 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 113 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DG 13 N1 ? ? E DC 101 F DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DG 13 O6 ? ? E DC 101 F DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DC 1 O2 ? ? ? 1_555 F DG 13 N2 ? ? E DC 101 F DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 102 F DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 102 F DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 102 F DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 11 N1 ? ? E DT 103 F DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 11 N6 ? ? E DT 103 F DA 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 10 N1 ? ? E DT 104 F DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 10 N6 ? ? E DT 104 F DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 105 F DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 105 F DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DT 6 N3 ? ? ? 1_555 F DA 8 N1 ? ? E DT 106 F DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DA 8 N6 ? ? E DT 106 F DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 7 N1 ? ? E DC 107 F DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 7 O6 ? ? E DC 107 F DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 7 N2 ? ? E DC 107 F DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 108 F DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 108 F DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 108 F DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 109 F DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 109 F DT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 110 F DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 110 F DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 110 F DG 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DA 11 N1 ? ? ? 1_555 F DT 3 N3 ? ? E DA 111 F DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DA 11 N6 ? ? ? 1_555 F DT 3 O4 ? ? E DA 111 F DT 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DA 12 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 112 F DT 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DA 12 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 112 F DT 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DC 13 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 113 F DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DC 13 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 113 F DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 13 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 113 F DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 101 ? ? "C1'" C DC 101 ? ? N1 C DC 101 ? ? 112.10 108.30 3.80 0.30 N 2 1 "O4'" C DC 108 ? ? "C1'" C DC 108 ? ? N1 C DC 108 ? ? 110.12 108.30 1.82 0.30 N 3 1 "O4'" C DA 109 ? ? "C1'" C DA 109 ? ? N9 C DA 109 ? ? 110.31 108.30 2.01 0.30 N 4 1 "O4'" D DT 202 ? ? "C1'" D DT 202 ? ? N1 D DT 202 ? ? 110.11 108.30 1.81 0.30 N 5 1 "O4'" D DC 212 ? ? "C1'" D DC 212 ? ? N1 D DC 212 ? ? 110.23 108.30 1.93 0.30 N 6 1 "O4'" D DG 213 ? ? "C1'" D DG 213 ? ? N9 D DG 213 ? ? 110.42 108.30 2.12 0.30 N 7 1 "O4'" E DC 101 ? ? "C1'" E DC 101 ? ? N1 E DC 101 ? ? 110.22 108.30 1.92 0.30 N 8 1 "O4'" E DG 102 ? ? "C1'" E DG 102 ? ? N9 E DG 102 ? ? 110.36 108.30 2.06 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 504 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -69.68 _pdbx_validate_torsion.psi 21.70 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -34.8790 24.7440 22.4250 0.4140 0.4332 0.1706 0.0019 0.0148 0.0184 1.4641 1.3791 1.2580 0.9342 0.4871 -0.4783 -0.0770 -0.0050 0.0820 0.0664 0.0307 0.0303 -0.0676 0.0351 0.0791 'X-RAY DIFFRACTION' 2 ? refined -33.5860 44.3400 10.6360 0.4340 0.4380 0.1753 -0.0063 -0.0269 0.0301 1.9000 1.4314 1.5124 0.0024 0.3775 0.5670 -0.0903 0.0255 0.0649 0.2073 0.1571 0.0068 -0.1570 -0.1555 0.0983 'X-RAY DIFFRACTION' 3 ? refined -52.2920 18.1810 17.0850 0.4222 0.4112 0.1839 -0.0267 -0.0480 0.0219 0.6094 1.5074 3.7603 0.8831 -1.3373 -2.3628 -0.0091 0.1599 -0.1509 0.0555 0.0227 0.0527 -0.1972 0.4283 -0.2445 'X-RAY DIFFRACTION' 4 ? refined -50.8490 18.3750 17.6620 0.4423 0.3175 0.1619 -0.0336 -0.0063 0.0265 1.4371 0.3156 8.1993 -0.1217 -1.3617 -0.5374 -0.0360 0.1041 -0.0681 0.0098 -0.0234 0.0776 -0.0641 0.2891 -0.5842 'X-RAY DIFFRACTION' 5 ? refined -47.4310 54.9050 19.4480 0.5758 0.5235 0.2038 0.0409 -0.0971 0.0519 0.1722 0.4870 2.3389 0.1142 -0.1044 0.8136 0.0270 0.0489 -0.0760 -0.0311 -0.0043 0.0129 -0.1443 -0.4786 -0.2478 'X-RAY DIFFRACTION' 6 ? refined -46.1230 54.6990 18.6530 0.5471 0.3179 0.2181 -0.0070 -0.0839 -0.0168 2.4581 0.7858 3.0389 -1.0086 0.5141 -1.2427 -0.0457 0.1653 -0.1195 -0.2117 0.1713 0.0225 0.0532 -0.0982 -0.3191 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 411 A 506 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 411 B 505 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 101 C 113 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 201 D 213 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 E 101 E 113 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 F 201 F 213 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 407 ? A GLY 1 2 1 Y 1 A PRO 408 ? A PRO 2 3 1 Y 1 A HIS 409 ? A HIS 3 4 1 Y 1 A MET 410 ? A MET 4 5 1 Y 1 A ARG 507 ? A ARG 101 6 1 Y 1 B GLY 407 ? B GLY 1 7 1 Y 1 B PRO 408 ? B PRO 2 8 1 Y 1 B HIS 409 ? B HIS 3 9 1 Y 1 B MET 410 ? B MET 4 10 1 Y 1 B LYS 506 ? B LYS 100 11 1 Y 1 B ARG 507 ? B ARG 101 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 DA OP3 O N N 71 DA P P N N 72 DA OP1 O N N 73 DA OP2 O N N 74 DA "O5'" O N N 75 DA "C5'" C N N 76 DA "C4'" C N R 77 DA "O4'" O N N 78 DA "C3'" C N S 79 DA "O3'" O N N 80 DA "C2'" C N N 81 DA "C1'" C N R 82 DA N9 N Y N 83 DA C8 C Y N 84 DA N7 N Y N 85 DA C5 C Y N 86 DA C6 C Y N 87 DA N6 N N N 88 DA N1 N Y N 89 DA C2 C Y N 90 DA N3 N Y N 91 DA C4 C Y N 92 DA HOP3 H N N 93 DA HOP2 H N N 94 DA "H5'" H N N 95 DA "H5''" H N N 96 DA "H4'" H N N 97 DA "H3'" H N N 98 DA "HO3'" H N N 99 DA "H2'" H N N 100 DA "H2''" H N N 101 DA "H1'" H N N 102 DA H8 H N N 103 DA H61 H N N 104 DA H62 H N N 105 DA H2 H N N 106 DC OP3 O N N 107 DC P P N N 108 DC OP1 O N N 109 DC OP2 O N N 110 DC "O5'" O N N 111 DC "C5'" C N N 112 DC "C4'" C N R 113 DC "O4'" O N N 114 DC "C3'" C N S 115 DC "O3'" O N N 116 DC "C2'" C N N 117 DC "C1'" C N R 118 DC N1 N N N 119 DC C2 C N N 120 DC O2 O N N 121 DC N3 N N N 122 DC C4 C N N 123 DC N4 N N N 124 DC C5 C N N 125 DC C6 C N N 126 DC HOP3 H N N 127 DC HOP2 H N N 128 DC "H5'" H N N 129 DC "H5''" H N N 130 DC "H4'" H N N 131 DC "H3'" H N N 132 DC "HO3'" H N N 133 DC "H2'" H N N 134 DC "H2''" H N N 135 DC "H1'" H N N 136 DC H41 H N N 137 DC H42 H N N 138 DC H5 H N N 139 DC H6 H N N 140 DG OP3 O N N 141 DG P P N N 142 DG OP1 O N N 143 DG OP2 O N N 144 DG "O5'" O N N 145 DG "C5'" C N N 146 DG "C4'" C N R 147 DG "O4'" O N N 148 DG "C3'" C N S 149 DG "O3'" O N N 150 DG "C2'" C N N 151 DG "C1'" C N R 152 DG N9 N Y N 153 DG C8 C Y N 154 DG N7 N Y N 155 DG C5 C Y N 156 DG C6 C N N 157 DG O6 O N N 158 DG N1 N N N 159 DG C2 C N N 160 DG N2 N N N 161 DG N3 N N N 162 DG C4 C Y N 163 DG HOP3 H N N 164 DG HOP2 H N N 165 DG "H5'" H N N 166 DG "H5''" H N N 167 DG "H4'" H N N 168 DG "H3'" H N N 169 DG "HO3'" H N N 170 DG "H2'" H N N 171 DG "H2''" H N N 172 DG "H1'" H N N 173 DG H8 H N N 174 DG H1 H N N 175 DG H21 H N N 176 DG H22 H N N 177 DT OP3 O N N 178 DT P P N N 179 DT OP1 O N N 180 DT OP2 O N N 181 DT "O5'" O N N 182 DT "C5'" C N N 183 DT "C4'" C N R 184 DT "O4'" O N N 185 DT "C3'" C N S 186 DT "O3'" O N N 187 DT "C2'" C N N 188 DT "C1'" C N R 189 DT N1 N N N 190 DT C2 C N N 191 DT O2 O N N 192 DT N3 N N N 193 DT C4 C N N 194 DT O4 O N N 195 DT C5 C N N 196 DT C7 C N N 197 DT C6 C N N 198 DT HOP3 H N N 199 DT HOP2 H N N 200 DT "H5'" H N N 201 DT "H5''" H N N 202 DT "H4'" H N N 203 DT "H3'" H N N 204 DT "HO3'" H N N 205 DT "H2'" H N N 206 DT "H2''" H N N 207 DT "H1'" H N N 208 DT H3 H N N 209 DT H71 H N N 210 DT H72 H N N 211 DT H73 H N N 212 DT H6 H N N 213 GLN N N N N 214 GLN CA C N S 215 GLN C C N N 216 GLN O O N N 217 GLN CB C N N 218 GLN CG C N N 219 GLN CD C N N 220 GLN OE1 O N N 221 GLN NE2 N N N 222 GLN OXT O N N 223 GLN H H N N 224 GLN H2 H N N 225 GLN HA H N N 226 GLN HB2 H N N 227 GLN HB3 H N N 228 GLN HG2 H N N 229 GLN HG3 H N N 230 GLN HE21 H N N 231 GLN HE22 H N N 232 GLN HXT H N N 233 GLU N N N N 234 GLU CA C N S 235 GLU C C N N 236 GLU O O N N 237 GLU CB C N N 238 GLU CG C N N 239 GLU CD C N N 240 GLU OE1 O N N 241 GLU OE2 O N N 242 GLU OXT O N N 243 GLU H H N N 244 GLU H2 H N N 245 GLU HA H N N 246 GLU HB2 H N N 247 GLU HB3 H N N 248 GLU HG2 H N N 249 GLU HG3 H N N 250 GLU HE2 H N N 251 GLU HXT H N N 252 GLY N N N N 253 GLY CA C N N 254 GLY C C N N 255 GLY O O N N 256 GLY OXT O N N 257 GLY H H N N 258 GLY H2 H N N 259 GLY HA2 H N N 260 GLY HA3 H N N 261 GLY HXT H N N 262 HIS N N N N 263 HIS CA C N S 264 HIS C C N N 265 HIS O O N N 266 HIS CB C N N 267 HIS CG C Y N 268 HIS ND1 N Y N 269 HIS CD2 C Y N 270 HIS CE1 C Y N 271 HIS NE2 N Y N 272 HIS OXT O N N 273 HIS H H N N 274 HIS H2 H N N 275 HIS HA H N N 276 HIS HB2 H N N 277 HIS HB3 H N N 278 HIS HD1 H N N 279 HIS HD2 H N N 280 HIS HE1 H N N 281 HIS HE2 H N N 282 HIS HXT H N N 283 HOH O O N N 284 HOH H1 H N N 285 HOH H2 H N N 286 ILE N N N N 287 ILE CA C N S 288 ILE C C N N 289 ILE O O N N 290 ILE CB C N S 291 ILE CG1 C N N 292 ILE CG2 C N N 293 ILE CD1 C N N 294 ILE OXT O N N 295 ILE H H N N 296 ILE H2 H N N 297 ILE HA H N N 298 ILE HB H N N 299 ILE HG12 H N N 300 ILE HG13 H N N 301 ILE HG21 H N N 302 ILE HG22 H N N 303 ILE HG23 H N N 304 ILE HD11 H N N 305 ILE HD12 H N N 306 ILE HD13 H N N 307 ILE HXT H N N 308 LEU N N N N 309 LEU CA C N S 310 LEU C C N N 311 LEU O O N N 312 LEU CB C N N 313 LEU CG C N N 314 LEU CD1 C N N 315 LEU CD2 C N N 316 LEU OXT O N N 317 LEU H H N N 318 LEU H2 H N N 319 LEU HA H N N 320 LEU HB2 H N N 321 LEU HB3 H N N 322 LEU HG H N N 323 LEU HD11 H N N 324 LEU HD12 H N N 325 LEU HD13 H N N 326 LEU HD21 H N N 327 LEU HD22 H N N 328 LEU HD23 H N N 329 LEU HXT H N N 330 LYS N N N N 331 LYS CA C N S 332 LYS C C N N 333 LYS O O N N 334 LYS CB C N N 335 LYS CG C N N 336 LYS CD C N N 337 LYS CE C N N 338 LYS NZ N N N 339 LYS OXT O N N 340 LYS H H N N 341 LYS H2 H N N 342 LYS HA H N N 343 LYS HB2 H N N 344 LYS HB3 H N N 345 LYS HG2 H N N 346 LYS HG3 H N N 347 LYS HD2 H N N 348 LYS HD3 H N N 349 LYS HE2 H N N 350 LYS HE3 H N N 351 LYS HZ1 H N N 352 LYS HZ2 H N N 353 LYS HZ3 H N N 354 LYS HXT H N N 355 MET N N N N 356 MET CA C N S 357 MET C C N N 358 MET O O N N 359 MET CB C N N 360 MET CG C N N 361 MET SD S N N 362 MET CE C N N 363 MET OXT O N N 364 MET H H N N 365 MET H2 H N N 366 MET HA H N N 367 MET HB2 H N N 368 MET HB3 H N N 369 MET HG2 H N N 370 MET HG3 H N N 371 MET HE1 H N N 372 MET HE2 H N N 373 MET HE3 H N N 374 MET HXT H N N 375 PHE N N N N 376 PHE CA C N S 377 PHE C C N N 378 PHE O O N N 379 PHE CB C N N 380 PHE CG C Y N 381 PHE CD1 C Y N 382 PHE CD2 C Y N 383 PHE CE1 C Y N 384 PHE CE2 C Y N 385 PHE CZ C Y N 386 PHE OXT O N N 387 PHE H H N N 388 PHE H2 H N N 389 PHE HA H N N 390 PHE HB2 H N N 391 PHE HB3 H N N 392 PHE HD1 H N N 393 PHE HD2 H N N 394 PHE HE1 H N N 395 PHE HE2 H N N 396 PHE HZ H N N 397 PHE HXT H N N 398 PRO N N N N 399 PRO CA C N S 400 PRO C C N N 401 PRO O O N N 402 PRO CB C N N 403 PRO CG C N N 404 PRO CD C N N 405 PRO OXT O N N 406 PRO H H N N 407 PRO HA H N N 408 PRO HB2 H N N 409 PRO HB3 H N N 410 PRO HG2 H N N 411 PRO HG3 H N N 412 PRO HD2 H N N 413 PRO HD3 H N N 414 PRO HXT H N N 415 SER N N N N 416 SER CA C N S 417 SER C C N N 418 SER O O N N 419 SER CB C N N 420 SER OG O N N 421 SER OXT O N N 422 SER H H N N 423 SER H2 H N N 424 SER HA H N N 425 SER HB2 H N N 426 SER HB3 H N N 427 SER HG H N N 428 SER HXT H N N 429 THR N N N N 430 THR CA C N S 431 THR C C N N 432 THR O O N N 433 THR CB C N R 434 THR OG1 O N N 435 THR CG2 C N N 436 THR OXT O N N 437 THR H H N N 438 THR H2 H N N 439 THR HA H N N 440 THR HB H N N 441 THR HG1 H N N 442 THR HG21 H N N 443 THR HG22 H N N 444 THR HG23 H N N 445 THR HXT H N N 446 TYR N N N N 447 TYR CA C N S 448 TYR C C N N 449 TYR O O N N 450 TYR CB C N N 451 TYR CG C Y N 452 TYR CD1 C Y N 453 TYR CD2 C Y N 454 TYR CE1 C Y N 455 TYR CE2 C Y N 456 TYR CZ C Y N 457 TYR OH O N N 458 TYR OXT O N N 459 TYR H H N N 460 TYR H2 H N N 461 TYR HA H N N 462 TYR HB2 H N N 463 TYR HB3 H N N 464 TYR HD1 H N N 465 TYR HD2 H N N 466 TYR HE1 H N N 467 TYR HE2 H N N 468 TYR HH H N N 469 TYR HXT H N N 470 VAL N N N N 471 VAL CA C N S 472 VAL C C N N 473 VAL O O N N 474 VAL CB C N N 475 VAL CG1 C N N 476 VAL CG2 C N N 477 VAL OXT O N N 478 VAL H H N N 479 VAL H2 H N N 480 VAL HA H N N 481 VAL HB H N N 482 VAL HG11 H N N 483 VAL HG12 H N N 484 VAL HG13 H N N 485 VAL HG21 H N N 486 VAL HG22 H N N 487 VAL HG23 H N N 488 VAL HXT H N N 489 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 DA OP3 P sing N N 67 DA OP3 HOP3 sing N N 68 DA P OP1 doub N N 69 DA P OP2 sing N N 70 DA P "O5'" sing N N 71 DA OP2 HOP2 sing N N 72 DA "O5'" "C5'" sing N N 73 DA "C5'" "C4'" sing N N 74 DA "C5'" "H5'" sing N N 75 DA "C5'" "H5''" sing N N 76 DA "C4'" "O4'" sing N N 77 DA "C4'" "C3'" sing N N 78 DA "C4'" "H4'" sing N N 79 DA "O4'" "C1'" sing N N 80 DA "C3'" "O3'" sing N N 81 DA "C3'" "C2'" sing N N 82 DA "C3'" "H3'" sing N N 83 DA "O3'" "HO3'" sing N N 84 DA "C2'" "C1'" sing N N 85 DA "C2'" "H2'" sing N N 86 DA "C2'" "H2''" sing N N 87 DA "C1'" N9 sing N N 88 DA "C1'" "H1'" sing N N 89 DA N9 C8 sing Y N 90 DA N9 C4 sing Y N 91 DA C8 N7 doub Y N 92 DA C8 H8 sing N N 93 DA N7 C5 sing Y N 94 DA C5 C6 sing Y N 95 DA C5 C4 doub Y N 96 DA C6 N6 sing N N 97 DA C6 N1 doub Y N 98 DA N6 H61 sing N N 99 DA N6 H62 sing N N 100 DA N1 C2 sing Y N 101 DA C2 N3 doub Y N 102 DA C2 H2 sing N N 103 DA N3 C4 sing Y N 104 DC OP3 P sing N N 105 DC OP3 HOP3 sing N N 106 DC P OP1 doub N N 107 DC P OP2 sing N N 108 DC P "O5'" sing N N 109 DC OP2 HOP2 sing N N 110 DC "O5'" "C5'" sing N N 111 DC "C5'" "C4'" sing N N 112 DC "C5'" "H5'" sing N N 113 DC "C5'" "H5''" sing N N 114 DC "C4'" "O4'" sing N N 115 DC "C4'" "C3'" sing N N 116 DC "C4'" "H4'" sing N N 117 DC "O4'" "C1'" sing N N 118 DC "C3'" "O3'" sing N N 119 DC "C3'" "C2'" sing N N 120 DC "C3'" "H3'" sing N N 121 DC "O3'" "HO3'" sing N N 122 DC "C2'" "C1'" sing N N 123 DC "C2'" "H2'" sing N N 124 DC "C2'" "H2''" sing N N 125 DC "C1'" N1 sing N N 126 DC "C1'" "H1'" sing N N 127 DC N1 C2 sing N N 128 DC N1 C6 sing N N 129 DC C2 O2 doub N N 130 DC C2 N3 sing N N 131 DC N3 C4 doub N N 132 DC C4 N4 sing N N 133 DC C4 C5 sing N N 134 DC N4 H41 sing N N 135 DC N4 H42 sing N N 136 DC C5 C6 doub N N 137 DC C5 H5 sing N N 138 DC C6 H6 sing N N 139 DG OP3 P sing N N 140 DG OP3 HOP3 sing N N 141 DG P OP1 doub N N 142 DG P OP2 sing N N 143 DG P "O5'" sing N N 144 DG OP2 HOP2 sing N N 145 DG "O5'" "C5'" sing N N 146 DG "C5'" "C4'" sing N N 147 DG "C5'" "H5'" sing N N 148 DG "C5'" "H5''" sing N N 149 DG "C4'" "O4'" sing N N 150 DG "C4'" "C3'" sing N N 151 DG "C4'" "H4'" sing N N 152 DG "O4'" "C1'" sing N N 153 DG "C3'" "O3'" sing N N 154 DG "C3'" "C2'" sing N N 155 DG "C3'" "H3'" sing N N 156 DG "O3'" "HO3'" sing N N 157 DG "C2'" "C1'" sing N N 158 DG "C2'" "H2'" sing N N 159 DG "C2'" "H2''" sing N N 160 DG "C1'" N9 sing N N 161 DG "C1'" "H1'" sing N N 162 DG N9 C8 sing Y N 163 DG N9 C4 sing Y N 164 DG C8 N7 doub Y N 165 DG C8 H8 sing N N 166 DG N7 C5 sing Y N 167 DG C5 C6 sing N N 168 DG C5 C4 doub Y N 169 DG C6 O6 doub N N 170 DG C6 N1 sing N N 171 DG N1 C2 sing N N 172 DG N1 H1 sing N N 173 DG C2 N2 sing N N 174 DG C2 N3 doub N N 175 DG N2 H21 sing N N 176 DG N2 H22 sing N N 177 DG N3 C4 sing N N 178 DT OP3 P sing N N 179 DT OP3 HOP3 sing N N 180 DT P OP1 doub N N 181 DT P OP2 sing N N 182 DT P "O5'" sing N N 183 DT OP2 HOP2 sing N N 184 DT "O5'" "C5'" sing N N 185 DT "C5'" "C4'" sing N N 186 DT "C5'" "H5'" sing N N 187 DT "C5'" "H5''" sing N N 188 DT "C4'" "O4'" sing N N 189 DT "C4'" "C3'" sing N N 190 DT "C4'" "H4'" sing N N 191 DT "O4'" "C1'" sing N N 192 DT "C3'" "O3'" sing N N 193 DT "C3'" "C2'" sing N N 194 DT "C3'" "H3'" sing N N 195 DT "O3'" "HO3'" sing N N 196 DT "C2'" "C1'" sing N N 197 DT "C2'" "H2'" sing N N 198 DT "C2'" "H2''" sing N N 199 DT "C1'" N1 sing N N 200 DT "C1'" "H1'" sing N N 201 DT N1 C2 sing N N 202 DT N1 C6 sing N N 203 DT C2 O2 doub N N 204 DT C2 N3 sing N N 205 DT N3 C4 sing N N 206 DT N3 H3 sing N N 207 DT C4 O4 doub N N 208 DT C4 C5 sing N N 209 DT C5 C7 sing N N 210 DT C5 C6 doub N N 211 DT C7 H71 sing N N 212 DT C7 H72 sing N N 213 DT C7 H73 sing N N 214 DT C6 H6 sing N N 215 GLN N CA sing N N 216 GLN N H sing N N 217 GLN N H2 sing N N 218 GLN CA C sing N N 219 GLN CA CB sing N N 220 GLN CA HA sing N N 221 GLN C O doub N N 222 GLN C OXT sing N N 223 GLN CB CG sing N N 224 GLN CB HB2 sing N N 225 GLN CB HB3 sing N N 226 GLN CG CD sing N N 227 GLN CG HG2 sing N N 228 GLN CG HG3 sing N N 229 GLN CD OE1 doub N N 230 GLN CD NE2 sing N N 231 GLN NE2 HE21 sing N N 232 GLN NE2 HE22 sing N N 233 GLN OXT HXT sing N N 234 GLU N CA sing N N 235 GLU N H sing N N 236 GLU N H2 sing N N 237 GLU CA C sing N N 238 GLU CA CB sing N N 239 GLU CA HA sing N N 240 GLU C O doub N N 241 GLU C OXT sing N N 242 GLU CB CG sing N N 243 GLU CB HB2 sing N N 244 GLU CB HB3 sing N N 245 GLU CG CD sing N N 246 GLU CG HG2 sing N N 247 GLU CG HG3 sing N N 248 GLU CD OE1 doub N N 249 GLU CD OE2 sing N N 250 GLU OE2 HE2 sing N N 251 GLU OXT HXT sing N N 252 GLY N CA sing N N 253 GLY N H sing N N 254 GLY N H2 sing N N 255 GLY CA C sing N N 256 GLY CA HA2 sing N N 257 GLY CA HA3 sing N N 258 GLY C O doub N N 259 GLY C OXT sing N N 260 GLY OXT HXT sing N N 261 HIS N CA sing N N 262 HIS N H sing N N 263 HIS N H2 sing N N 264 HIS CA C sing N N 265 HIS CA CB sing N N 266 HIS CA HA sing N N 267 HIS C O doub N N 268 HIS C OXT sing N N 269 HIS CB CG sing N N 270 HIS CB HB2 sing N N 271 HIS CB HB3 sing N N 272 HIS CG ND1 sing Y N 273 HIS CG CD2 doub Y N 274 HIS ND1 CE1 doub Y N 275 HIS ND1 HD1 sing N N 276 HIS CD2 NE2 sing Y N 277 HIS CD2 HD2 sing N N 278 HIS CE1 NE2 sing Y N 279 HIS CE1 HE1 sing N N 280 HIS NE2 HE2 sing N N 281 HIS OXT HXT sing N N 282 HOH O H1 sing N N 283 HOH O H2 sing N N 284 ILE N CA sing N N 285 ILE N H sing N N 286 ILE N H2 sing N N 287 ILE CA C sing N N 288 ILE CA CB sing N N 289 ILE CA HA sing N N 290 ILE C O doub N N 291 ILE C OXT sing N N 292 ILE CB CG1 sing N N 293 ILE CB CG2 sing N N 294 ILE CB HB sing N N 295 ILE CG1 CD1 sing N N 296 ILE CG1 HG12 sing N N 297 ILE CG1 HG13 sing N N 298 ILE CG2 HG21 sing N N 299 ILE CG2 HG22 sing N N 300 ILE CG2 HG23 sing N N 301 ILE CD1 HD11 sing N N 302 ILE CD1 HD12 sing N N 303 ILE CD1 HD13 sing N N 304 ILE OXT HXT sing N N 305 LEU N CA sing N N 306 LEU N H sing N N 307 LEU N H2 sing N N 308 LEU CA C sing N N 309 LEU CA CB sing N N 310 LEU CA HA sing N N 311 LEU C O doub N N 312 LEU C OXT sing N N 313 LEU CB CG sing N N 314 LEU CB HB2 sing N N 315 LEU CB HB3 sing N N 316 LEU CG CD1 sing N N 317 LEU CG CD2 sing N N 318 LEU CG HG sing N N 319 LEU CD1 HD11 sing N N 320 LEU CD1 HD12 sing N N 321 LEU CD1 HD13 sing N N 322 LEU CD2 HD21 sing N N 323 LEU CD2 HD22 sing N N 324 LEU CD2 HD23 sing N N 325 LEU OXT HXT sing N N 326 LYS N CA sing N N 327 LYS N H sing N N 328 LYS N H2 sing N N 329 LYS CA C sing N N 330 LYS CA CB sing N N 331 LYS CA HA sing N N 332 LYS C O doub N N 333 LYS C OXT sing N N 334 LYS CB CG sing N N 335 LYS CB HB2 sing N N 336 LYS CB HB3 sing N N 337 LYS CG CD sing N N 338 LYS CG HG2 sing N N 339 LYS CG HG3 sing N N 340 LYS CD CE sing N N 341 LYS CD HD2 sing N N 342 LYS CD HD3 sing N N 343 LYS CE NZ sing N N 344 LYS CE HE2 sing N N 345 LYS CE HE3 sing N N 346 LYS NZ HZ1 sing N N 347 LYS NZ HZ2 sing N N 348 LYS NZ HZ3 sing N N 349 LYS OXT HXT sing N N 350 MET N CA sing N N 351 MET N H sing N N 352 MET N H2 sing N N 353 MET CA C sing N N 354 MET CA CB sing N N 355 MET CA HA sing N N 356 MET C O doub N N 357 MET C OXT sing N N 358 MET CB CG sing N N 359 MET CB HB2 sing N N 360 MET CB HB3 sing N N 361 MET CG SD sing N N 362 MET CG HG2 sing N N 363 MET CG HG3 sing N N 364 MET SD CE sing N N 365 MET CE HE1 sing N N 366 MET CE HE2 sing N N 367 MET CE HE3 sing N N 368 MET OXT HXT sing N N 369 PHE N CA sing N N 370 PHE N H sing N N 371 PHE N H2 sing N N 372 PHE CA C sing N N 373 PHE CA CB sing N N 374 PHE CA HA sing N N 375 PHE C O doub N N 376 PHE C OXT sing N N 377 PHE CB CG sing N N 378 PHE CB HB2 sing N N 379 PHE CB HB3 sing N N 380 PHE CG CD1 doub Y N 381 PHE CG CD2 sing Y N 382 PHE CD1 CE1 sing Y N 383 PHE CD1 HD1 sing N N 384 PHE CD2 CE2 doub Y N 385 PHE CD2 HD2 sing N N 386 PHE CE1 CZ doub Y N 387 PHE CE1 HE1 sing N N 388 PHE CE2 CZ sing Y N 389 PHE CE2 HE2 sing N N 390 PHE CZ HZ sing N N 391 PHE OXT HXT sing N N 392 PRO N CA sing N N 393 PRO N CD sing N N 394 PRO N H sing N N 395 PRO CA C sing N N 396 PRO CA CB sing N N 397 PRO CA HA sing N N 398 PRO C O doub N N 399 PRO C OXT sing N N 400 PRO CB CG sing N N 401 PRO CB HB2 sing N N 402 PRO CB HB3 sing N N 403 PRO CG CD sing N N 404 PRO CG HG2 sing N N 405 PRO CG HG3 sing N N 406 PRO CD HD2 sing N N 407 PRO CD HD3 sing N N 408 PRO OXT HXT sing N N 409 SER N CA sing N N 410 SER N H sing N N 411 SER N H2 sing N N 412 SER CA C sing N N 413 SER CA CB sing N N 414 SER CA HA sing N N 415 SER C O doub N N 416 SER C OXT sing N N 417 SER CB OG sing N N 418 SER CB HB2 sing N N 419 SER CB HB3 sing N N 420 SER OG HG sing N N 421 SER OXT HXT sing N N 422 THR N CA sing N N 423 THR N H sing N N 424 THR N H2 sing N N 425 THR CA C sing N N 426 THR CA CB sing N N 427 THR CA HA sing N N 428 THR C O doub N N 429 THR C OXT sing N N 430 THR CB OG1 sing N N 431 THR CB CG2 sing N N 432 THR CB HB sing N N 433 THR OG1 HG1 sing N N 434 THR CG2 HG21 sing N N 435 THR CG2 HG22 sing N N 436 THR CG2 HG23 sing N N 437 THR OXT HXT sing N N 438 TYR N CA sing N N 439 TYR N H sing N N 440 TYR N H2 sing N N 441 TYR CA C sing N N 442 TYR CA CB sing N N 443 TYR CA HA sing N N 444 TYR C O doub N N 445 TYR C OXT sing N N 446 TYR CB CG sing N N 447 TYR CB HB2 sing N N 448 TYR CB HB3 sing N N 449 TYR CG CD1 doub Y N 450 TYR CG CD2 sing Y N 451 TYR CD1 CE1 sing Y N 452 TYR CD1 HD1 sing N N 453 TYR CD2 CE2 doub Y N 454 TYR CD2 HD2 sing N N 455 TYR CE1 CZ doub Y N 456 TYR CE1 HE1 sing N N 457 TYR CE2 CZ sing Y N 458 TYR CE2 HE2 sing N N 459 TYR CZ OH sing N N 460 TYR OH HH sing N N 461 TYR OXT HXT sing N N 462 VAL N CA sing N N 463 VAL N H sing N N 464 VAL N H2 sing N N 465 VAL CA C sing N N 466 VAL CA CB sing N N 467 VAL CA HA sing N N 468 VAL C O doub N N 469 VAL C OXT sing N N 470 VAL CB CG1 sing N N 471 VAL CB CG2 sing N N 472 VAL CB HB sing N N 473 VAL CG1 HG11 sing N N 474 VAL CG1 HG12 sing N N 475 VAL CG1 HG13 sing N N 476 VAL CG2 HG21 sing N N 477 VAL CG2 HG22 sing N N 478 VAL CG2 HG23 sing N N 479 VAL OXT HXT sing N N 480 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3PVP 'double helix' 3PVP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 D DG 13 1_555 0.850 0.032 0.130 -3.059 0.036 10.411 1 C_DC101:DG213_D C 101 ? D 213 ? 19 1 1 C DG 2 1_555 D DC 12 1_555 -0.377 -0.316 0.480 -13.240 -28.009 -1.061 2 C_DG102:DC212_D C 102 ? D 212 ? 19 1 1 C DT 3 1_555 D DA 11 1_555 -0.101 -0.171 0.686 -25.007 -15.423 -2.370 3 C_DT103:DA211_D C 103 ? D 211 ? 20 1 1 C DT 4 1_555 D DA 10 1_555 0.006 -0.268 0.262 -16.540 -9.995 0.875 4 C_DT104:DA210_D C 104 ? D 210 ? 20 1 1 C DA 5 1_555 D DT 9 1_555 -0.288 -0.220 -0.234 -8.439 -12.759 1.138 5 C_DA105:DT209_D C 105 ? D 209 ? 20 1 1 C DT 6 1_555 D DA 8 1_555 0.330 -0.126 0.040 -3.585 -15.646 7.476 6 C_DT106:DA208_D C 106 ? D 208 ? 20 1 1 C DC 7 1_555 D DG 7 1_555 0.026 0.047 -0.359 5.995 -13.475 -0.782 7 C_DC107:DG207_D C 107 ? D 207 ? 19 1 1 C DC 8 1_555 D DG 6 1_555 0.135 -0.066 -0.104 -3.241 -10.368 1.916 8 C_DC108:DG206_D C 108 ? D 206 ? 19 1 1 C DA 9 1_555 D DT 5 1_555 0.160 -0.087 0.094 -0.141 -1.199 -0.698 9 C_DA109:DT205_D C 109 ? D 205 ? 20 1 1 C DC 10 1_555 D DG 4 1_555 1.033 -0.128 -0.012 17.094 -13.881 8.192 10 C_DC110:DG204_D C 110 ? D 204 ? 19 1 1 C DA 11 1_555 D DT 3 1_555 -0.030 -0.091 0.039 -0.449 -4.458 1.874 11 C_DA111:DT203_D C 111 ? D 203 ? 20 1 1 C DA 12 1_555 D DT 2 1_555 0.105 0.001 0.798 23.501 -8.600 3.560 12 C_DA112:DT202_D C 112 ? D 202 ? 20 1 1 C DC 13 1_555 D DG 1 1_555 0.567 0.137 0.108 21.959 -20.152 8.857 13 C_DC113:DG201_D C 113 ? D 201 ? 19 1 1 E DC 1 1_555 F DG 13 1_555 0.830 -0.291 0.432 0.972 -11.942 5.374 14 E_DC101:DG213_F E 101 ? F 213 ? 19 1 1 E DG 2 1_555 F DC 12 1_555 -0.432 -0.137 0.131 0.962 -24.722 4.109 15 E_DG102:DC212_F E 102 ? F 212 ? 19 1 1 E DT 3 1_555 F DA 11 1_555 -0.313 -0.266 0.589 -18.354 -13.723 -0.385 16 E_DT103:DA211_F E 103 ? F 211 ? 20 1 1 E DT 4 1_555 F DA 10 1_555 -0.015 -0.141 0.249 -11.812 -13.176 1.828 17 E_DT104:DA210_F E 104 ? F 210 ? 20 1 1 E DA 5 1_555 F DT 9 1_555 0.098 -0.129 -0.016 -6.110 -8.584 3.075 18 E_DA105:DT209_F E 105 ? F 209 ? 20 1 1 E DT 6 1_555 F DA 8 1_555 0.156 -0.141 0.101 -5.412 -15.879 5.921 19 E_DT106:DA208_F E 106 ? F 208 ? 20 1 1 E DC 7 1_555 F DG 7 1_555 0.494 -0.161 -0.290 3.214 -9.195 0.174 20 E_DC107:DG207_F E 107 ? F 207 ? 19 1 1 E DC 8 1_555 F DG 6 1_555 -0.376 -0.192 -0.030 -2.051 -6.257 -0.384 21 E_DC108:DG206_F E 108 ? F 206 ? 19 1 1 E DA 9 1_555 F DT 5 1_555 -0.277 -0.206 0.166 6.393 -4.426 -4.449 22 E_DA109:DT205_F E 109 ? F 205 ? 20 1 1 E DC 10 1_555 F DG 4 1_555 0.278 -0.176 0.123 13.495 -9.848 3.135 23 E_DC110:DG204_F E 110 ? F 204 ? 19 1 1 E DA 11 1_555 F DT 3 1_555 0.478 -0.226 -0.177 2.008 -5.793 2.083 24 E_DA111:DT203_F E 111 ? F 203 ? 20 1 1 E DA 12 1_555 F DT 2 1_555 -0.119 -0.283 0.395 20.047 -11.137 1.023 25 E_DA112:DT202_F E 112 ? F 202 ? 20 1 1 E DC 13 1_555 F DG 1 1_555 0.460 -0.180 -0.293 18.046 -19.471 2.124 26 E_DC113:DG201_F E 113 ? F 201 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 D DG 13 1_555 C DG 2 1_555 D DC 12 1_555 -1.115 -0.091 3.393 -9.233 1.665 37.389 -0.360 0.456 3.552 2.548 14.131 38.507 1 CC_DC101DG102:DC212DG213_DD C 101 ? D 213 ? C 102 ? D 212 ? 1 C DG 2 1_555 D DC 12 1_555 C DT 3 1_555 D DA 11 1_555 -0.379 -1.011 3.505 1.601 -2.722 36.654 -1.202 0.836 3.549 -4.318 -2.539 36.785 2 CC_DG102DT103:DA211DC212_DD C 102 ? D 212 ? C 103 ? D 211 ? 1 C DT 3 1_555 D DA 11 1_555 C DT 4 1_555 D DA 10 1_555 -0.183 0.104 3.050 1.858 -3.977 37.032 0.652 0.514 3.011 -6.235 -2.912 37.282 3 CC_DT103DT104:DA210DA211_DD C 103 ? D 211 ? C 104 ? D 210 ? 1 C DT 4 1_555 D DA 10 1_555 C DA 5 1_555 D DT 9 1_555 -0.194 2.126 3.136 -0.492 -6.700 45.522 3.249 0.209 2.814 -8.604 0.631 45.989 4 CC_DT104DA105:DT209DA210_DD C 104 ? D 210 ? C 105 ? D 209 ? 1 C DA 5 1_555 D DT 9 1_555 C DT 6 1_555 D DA 8 1_555 0.271 -0.553 3.301 -4.076 1.396 30.592 -1.310 -1.300 3.211 2.630 7.677 30.887 5 CC_DA105DT106:DA208DT209_DD C 105 ? D 209 ? C 106 ? D 208 ? 1 C DT 6 1_555 D DA 8 1_555 C DC 7 1_555 D DG 7 1_555 -0.136 0.174 3.055 5.368 7.255 32.955 -0.782 1.029 2.967 12.499 -9.249 34.135 6 CC_DT106DC107:DG207DA208_DD C 106 ? D 208 ? C 107 ? D 207 ? 1 C DC 7 1_555 D DG 7 1_555 C DC 8 1_555 D DG 6 1_555 0.274 -0.580 3.581 -1.292 4.799 32.125 -1.945 -0.733 3.447 8.607 2.318 32.498 7 CC_DC107DC108:DG206DG207_DD C 107 ? D 207 ? C 108 ? D 206 ? 1 C DC 8 1_555 D DG 6 1_555 C DA 9 1_555 D DT 5 1_555 -0.200 0.187 3.279 -2.702 8.228 32.010 -1.076 -0.111 3.232 14.589 4.791 33.131 8 CC_DC108DA109:DT205DG206_DD C 108 ? D 206 ? C 109 ? D 205 ? 1 C DA 9 1_555 D DT 5 1_555 C DC 10 1_555 D DG 4 1_555 1.456 -0.622 2.983 0.319 2.210 34.800 -1.343 -2.386 2.952 3.690 -0.533 34.870 9 CC_DA109DC110:DG204DT205_DD C 109 ? D 205 ? C 110 ? D 204 ? 1 C DC 10 1_555 D DG 4 1_555 C DA 11 1_555 D DT 3 1_555 -0.624 -1.219 3.624 -2.682 5.851 24.295 -4.657 0.585 3.292 13.599 6.233 25.121 10 CC_DC110DA111:DT203DG204_DD C 110 ? D 204 ? C 111 ? D 203 ? 1 C DA 11 1_555 D DT 3 1_555 C DA 12 1_555 D DT 2 1_555 0.148 -0.441 2.693 -5.430 3.852 33.428 -1.250 -0.954 2.573 6.615 9.325 34.066 11 CC_DA111DA112:DT202DT203_DD C 111 ? D 203 ? C 112 ? D 202 ? 1 C DA 12 1_555 D DT 2 1_555 C DC 13 1_555 D DG 1 1_555 0.125 -0.827 3.432 2.283 -1.690 36.492 -1.072 0.133 3.467 -2.694 -3.640 36.599 12 CC_DA112DC113:DG201DT202_DD C 112 ? D 202 ? C 113 ? D 201 ? 1 E DC 1 1_555 F DG 13 1_555 E DG 2 1_555 F DC 12 1_555 -0.279 -0.812 3.049 4.482 18.751 28.667 -3.888 1.072 2.082 33.509 -8.010 34.434 13 EE_DC101DG102:DC212DG213_FF E 101 ? F 213 ? E 102 ? F 212 ? 1 E DG 2 1_555 F DC 12 1_555 E DT 3 1_555 F DA 11 1_555 -0.536 -0.938 3.789 -2.577 -5.104 37.282 -0.669 0.435 3.906 -7.927 4.003 37.703 14 EE_DG102DT103:DA211DC212_FF E 102 ? F 212 ? E 103 ? F 211 ? 1 E DT 3 1_555 F DA 11 1_555 E DT 4 1_555 F DA 10 1_555 0.078 -0.156 3.099 3.487 -1.826 38.216 -0.022 0.294 3.098 -2.780 -5.309 38.410 15 EE_DT103DT104:DA210DA211_FF E 103 ? F 211 ? E 104 ? F 210 ? 1 E DT 4 1_555 F DA 10 1_555 E DA 5 1_555 F DT 9 1_555 -0.082 1.548 3.256 -1.000 -5.971 43.998 2.583 0.019 3.032 -7.926 1.327 44.392 16 EE_DT104DA105:DT209DA210_FF E 104 ? F 210 ? E 105 ? F 209 ? 1 E DA 5 1_555 F DT 9 1_555 E DT 6 1_555 F DA 8 1_555 0.053 -0.749 3.305 -0.891 0.481 30.011 -1.545 -0.286 3.290 0.929 1.719 30.028 17 EE_DA105DT106:DA208DT209_FF E 105 ? F 209 ? E 106 ? F 208 ? 1 E DT 6 1_555 F DA 8 1_555 E DC 7 1_555 F DG 7 1_555 -0.211 0.132 3.171 4.456 4.707 33.198 -0.510 1.061 3.107 8.141 -7.707 33.808 18 EE_DT106DC107:DG207DA208_FF E 106 ? F 208 ? E 107 ? F 207 ? 1 E DC 7 1_555 F DG 7 1_555 E DC 8 1_555 F DG 6 1_555 0.212 -0.365 3.377 -0.551 7.902 28.922 -2.366 -0.526 3.165 15.458 1.078 29.965 19 EE_DC107DC108:DG206DG207_FF E 107 ? F 207 ? E 108 ? F 206 ? 1 E DC 8 1_555 F DG 6 1_555 E DA 9 1_555 F DT 5 1_555 -0.343 0.496 3.225 -3.270 5.110 32.939 0.016 0.055 3.280 8.917 5.706 33.478 20 EE_DC108DA109:DT205DG206_FF E 108 ? F 206 ? E 109 ? F 205 ? 1 E DA 9 1_555 F DT 5 1_555 E DC 10 1_555 F DG 4 1_555 1.432 -0.812 3.202 -0.915 0.394 33.279 -1.481 -2.648 3.153 0.688 1.598 33.293 21 EE_DA109DC110:DG204DT205_FF E 109 ? F 205 ? E 110 ? F 204 ? 1 E DC 10 1_555 F DG 4 1_555 E DA 11 1_555 F DT 3 1_555 -0.404 -1.250 3.506 1.870 4.861 30.574 -3.311 1.130 3.243 9.135 -3.515 31.004 22 EE_DC110DA111:DT203DG204_FF E 110 ? F 204 ? E 111 ? F 203 ? 1 E DA 11 1_555 F DT 3 1_555 E DA 12 1_555 F DT 2 1_555 -0.393 -0.354 2.843 -6.019 6.623 30.907 -1.672 -0.229 2.737 12.112 11.009 32.146 23 EE_DA111DA112:DT202DT203_FF E 111 ? F 203 ? E 112 ? F 202 ? 1 E DA 12 1_555 F DT 2 1_555 E DC 13 1_555 F DG 1 1_555 0.409 -0.926 3.334 3.007 1.169 37.582 -1.586 -0.235 3.327 1.811 -4.657 37.715 24 EE_DA112DC113:DG201DT202_FF E 112 ? F 202 ? E 113 ? F 201 ? # _atom_sites.entry_id 3PVP _atom_sites.fract_transf_matrix[1][1] 0.011277 _atom_sites.fract_transf_matrix[1][2] 0.006511 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013021 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009509 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_