HEADER DNA BINDING PROTEIN/DNA 07-DEC-10 3PVV TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DNAA-DBD IN COMPLEX WITH BOX1 TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNAA DBD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3'); COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3'); COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: ATCC 25177 / H37RA; SOURCE 5 GENE: DNAA, MRA_0001, RV0001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19PPS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS HELIX-TURN-HELIX MOTIF, INTERACTING WITH DNAA-BOX, DNAA-BOX, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.V.TSODIKOV,T.BISWAS REVDAT 4 21-FEB-24 3PVV 1 SEQADV REVDAT 3 06-JUL-11 3PVV 1 JRNL REVDAT 2 15-JUN-11 3PVV 1 JRNL REVDAT 1 25-MAY-11 3PVV 0 JRNL AUTH O.V.TSODIKOV,T.BISWAS JRNL TITL STRUCTURAL AND THERMODYNAMIC SIGNATURES OF DNA RECOGNITION JRNL TITL 2 BY MYCOBACTERIUM TUBERCULOSIS DNAA. JRNL REF J.MOL.BIOL. V. 410 461 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21620858 JRNL DOI 10.1016/J.JMB.2011.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 29808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1511 REMARK 3 NUCLEIC ACID ATOMS : 1054 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.71000 REMARK 3 B22 (A**2) : 2.71000 REMARK 3 B33 (A**2) : -4.06000 REMARK 3 B12 (A**2) : 1.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2709 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3869 ; 0.928 ; 2.450 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 3.689 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;30.710 ;21.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;14.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;12.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1673 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 949 ; 1.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1523 ; 3.519 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 4.904 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2346 ; 7.721 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2709 ; 4.851 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 179 ; 0.013 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2565 ;15.772 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 411 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6310 24.8440 22.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.1477 REMARK 3 T33: 0.0859 T12: -0.0002 REMARK 3 T13: 0.0056 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.8651 L22: 0.6259 REMARK 3 L33: 0.4991 L12: 0.1009 REMARK 3 L13: 0.2765 L23: -0.4685 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0174 S13: 0.0225 REMARK 3 S21: -0.0385 S22: -0.0171 S23: -0.0164 REMARK 3 S31: 0.0310 S32: 0.0116 S33: 0.0388 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 411 B 505 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5720 44.4930 10.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1354 REMARK 3 T33: 0.0870 T12: -0.0005 REMARK 3 T13: -0.0067 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6182 L22: 0.5480 REMARK 3 L33: 1.1306 L12: 0.0179 REMARK 3 L13: 0.4511 L23: -0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0145 S13: 0.0570 REMARK 3 S21: -0.0101 S22: -0.0187 S23: -0.0114 REMARK 3 S31: -0.0494 S32: 0.0513 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 101 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): -52.1360 18.2290 17.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.2182 REMARK 3 T33: 0.0797 T12: -0.0874 REMARK 3 T13: -0.0140 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.7481 L22: 1.0245 REMARK 3 L33: 5.0444 L12: 0.5377 REMARK 3 L13: -0.5633 L23: -2.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0622 S13: 0.2210 REMARK 3 S21: -0.0894 S22: 0.1595 S23: 0.1459 REMARK 3 S31: 0.2382 S32: -0.5436 S33: -0.1459 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 201 D 213 REMARK 3 ORIGIN FOR THE GROUP (A): -50.5850 18.3040 17.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.1180 REMARK 3 T33: 0.0911 T12: -0.0298 REMARK 3 T13: -0.0364 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2799 L22: 1.1080 REMARK 3 L33: 6.7115 L12: -0.3103 REMARK 3 L13: -1.6409 L23: -0.1430 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.0707 S13: -0.0999 REMARK 3 S21: -0.0585 S22: 0.0453 S23: 0.1839 REMARK 3 S31: 0.2372 S32: -0.5110 S33: 0.0031 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 101 E 113 REMARK 3 ORIGIN FOR THE GROUP (A): -47.6410 54.6220 19.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.1523 REMARK 3 T33: 0.0688 T12: 0.0258 REMARK 3 T13: -0.0424 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7168 L22: 0.0130 REMARK 3 L33: 0.2134 L12: -0.0381 REMARK 3 L13: 0.2898 L23: -0.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0022 S13: -0.0641 REMARK 3 S21: 0.0146 S22: 0.0477 S23: 0.0021 REMARK 3 S31: -0.1572 S32: -0.0389 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 201 F 213 REMARK 3 ORIGIN FOR THE GROUP (A): -46.2210 54.6770 18.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.0917 REMARK 3 T33: 0.1010 T12: 0.0003 REMARK 3 T13: -0.0323 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.6531 L22: 0.7033 REMARK 3 L33: 0.6723 L12: -0.8344 REMARK 3 L13: 0.4717 L23: -0.6221 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.1710 S13: 0.0510 REMARK 3 S21: 0.1024 S22: 0.1489 S23: 0.0554 REMARK 3 S31: -0.1860 S32: -0.1537 S33: -0.1176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS, 2 MM MGCL2, 50 MM NACL, REMARK 280 1200 MM NH4SO4, 2-5% GLYCEROL, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.10400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.05200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.05200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.10400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 407 REMARK 465 PRO A 408 REMARK 465 HIS A 409 REMARK 465 MET A 410 REMARK 465 ARG A 507 REMARK 465 GLY B 407 REMARK 465 PRO B 408 REMARK 465 HIS B 409 REMARK 465 MET B 410 REMARK 465 LYS B 506 REMARK 465 ARG B 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 411 CG1 CG2 CD1 REMARK 470 SER A 505 OG REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 ARG B 504 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 9 O HOH C 48 2.03 REMARK 500 O HOH A 167 O HOH A 170 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 101 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA C 109 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 101 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC F 209 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC F 212 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 504 30.77 -80.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PVP RELATED DB: PDB DBREF 3PVV A 411 507 UNP A5TY69 DNAA_MYCTA 411 507 DBREF 3PVV B 411 507 UNP A5TY69 DNAA_MYCTA 411 507 DBREF 3PVV C 101 113 PDB 3PVV 3PVV 101 113 DBREF 3PVV E 101 113 PDB 3PVV 3PVV 101 113 DBREF 3PVV D 201 213 PDB 3PVV 3PVV 201 213 DBREF 3PVV F 201 213 PDB 3PVV 3PVV 201 213 SEQADV 3PVV GLY A 407 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV PRO A 408 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV HIS A 409 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV MET A 410 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV GLY B 407 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV PRO B 408 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV HIS B 409 UNP A5TY69 EXPRESSION TAG SEQADV 3PVV MET B 410 UNP A5TY69 EXPRESSION TAG SEQRES 1 A 101 GLY PRO HIS MET ILE SER ALA ALA THR ILE MET ALA ALA SEQRES 2 A 101 THR ALA GLU TYR PHE ASP THR THR VAL GLU GLU LEU ARG SEQRES 3 A 101 GLY PRO GLY LYS THR ARG ALA LEU ALA GLN SER ARG GLN SEQRES 4 A 101 ILE ALA MET TYR LEU CYS ARG GLU LEU THR ASP LEU SER SEQRES 5 A 101 LEU PRO LYS ILE GLY GLN ALA PHE GLY ARG ASP HIS THR SEQRES 6 A 101 THR VAL MET TYR ALA GLN ARG LYS ILE LEU SER GLU MET SEQRES 7 A 101 ALA GLU ARG ARG GLU VAL PHE ASP HIS VAL LYS GLU LEU SEQRES 8 A 101 THR THR ARG ILE ARG GLN ARG SER LYS ARG SEQRES 1 B 101 GLY PRO HIS MET ILE SER ALA ALA THR ILE MET ALA ALA SEQRES 2 B 101 THR ALA GLU TYR PHE ASP THR THR VAL GLU GLU LEU ARG SEQRES 3 B 101 GLY PRO GLY LYS THR ARG ALA LEU ALA GLN SER ARG GLN SEQRES 4 B 101 ILE ALA MET TYR LEU CYS ARG GLU LEU THR ASP LEU SER SEQRES 5 B 101 LEU PRO LYS ILE GLY GLN ALA PHE GLY ARG ASP HIS THR SEQRES 6 B 101 THR VAL MET TYR ALA GLN ARG LYS ILE LEU SER GLU MET SEQRES 7 B 101 ALA GLU ARG ARG GLU VAL PHE ASP HIS VAL LYS GLU LEU SEQRES 8 B 101 THR THR ARG ILE ARG GLN ARG SER LYS ARG SEQRES 1 C 13 DC DG DT DT DG DT DC DC DA DC DA DA DC SEQRES 1 D 13 DG DT DT DG DT DG DG DA DC DA DA DC DG SEQRES 1 E 13 DC DG DT DT DG DT DC DC DA DC DA DA DC SEQRES 1 F 13 DG DT DT DG DT DG DG DA DC DA DA DC DG FORMUL 7 HOH *179(H2 O) HELIX 1 1 SER A 412 PHE A 424 1 13 HELIX 2 2 THR A 427 GLY A 433 1 7 HELIX 3 3 THR A 437 THR A 455 1 19 HELIX 4 4 SER A 458 PHE A 466 1 9 HELIX 5 5 ASP A 469 ARG A 487 1 19 HELIX 6 6 ARG A 487 LYS A 506 1 20 HELIX 7 7 SER B 412 PHE B 424 1 13 HELIX 8 8 THR B 427 GLY B 433 1 7 HELIX 9 9 THR B 437 THR B 455 1 19 HELIX 10 10 SER B 458 GLY B 467 1 10 HELIX 11 11 ASP B 469 ARG B 487 1 19 HELIX 12 12 ARG B 487 ARG B 504 1 18 CRYST1 88.441 88.441 105.156 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011307 0.006528 0.000000 0.00000 SCALE2 0.000000 0.013056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009510 0.00000