HEADER STRUCTURAL PROTEIN 09-DEC-10 3PWX TITLE STRUCTURE OF PUTATIVE FLAGELLAR HOOK-ASSOCIATED PROTEIN FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FLAGELLAR HOOK-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 39-268; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: VPA0274; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, STRUCTURAL PROTEIN, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,Y.PATSKOVSKY,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3PWX 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 08-NOV-17 3PWX 1 REMARK REVDAT 1 19-JAN-11 3PWX 0 JRNL AUTH U.A.RAMAGOPAL,Y.PATSKOVSKY,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL STRUCTURE OF PUTATIVE FLAGELLAR HOOK-ASSOCIATED PROTEIN FROM JRNL TITL 2 VIBRIO PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.06000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.592 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.319 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3189 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4307 ; 1.731 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 6.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;40.758 ;26.711 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;20.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2383 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2064 ; 1.233 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3304 ; 2.187 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1125 ; 2.989 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1003 ; 4.800 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6580 36.5610 24.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.2738 T22: 1.1338 REMARK 3 T33: 0.4840 T12: 0.0633 REMARK 3 T13: -0.0115 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.2664 L22: 1.6109 REMARK 3 L33: 0.9548 L12: -1.6213 REMARK 3 L13: -0.2000 L23: 0.6785 REMARK 3 S TENSOR REMARK 3 S11: 0.3561 S12: -0.1237 S13: -0.1889 REMARK 3 S21: -0.0874 S22: -0.2602 S23: 0.0934 REMARK 3 S31: -0.0166 S32: -0.1117 S33: -0.0959 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 64.3870 40.4810 14.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 1.1816 REMARK 3 T33: 0.7363 T12: 0.2268 REMARK 3 T13: 0.1478 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 10.5745 L22: 2.8650 REMARK 3 L33: -0.1171 L12: -4.7422 REMARK 3 L13: 0.4043 L23: 0.9267 REMARK 3 S TENSOR REMARK 3 S11: 0.4259 S12: -0.3042 S13: 1.4062 REMARK 3 S21: -0.2712 S22: 0.0026 S23: -0.9345 REMARK 3 S31: 0.0094 S32: -0.2934 S33: -0.4285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3PWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-09; 22-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 24-ID-C; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, PHENIX, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 30% PEG 4K, 0.2M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.34350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.34350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 300 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 37 REMARK 465 SER A 262 REMARK 465 ALA A 263 REMARK 465 LEU A 264 REMARK 465 ASP A 265 REMARK 465 TYR A 266 REMARK 465 GLY A 267 REMARK 465 GLU A 268 REMARK 465 GLY A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 MSE B 37 REMARK 465 SER B 38 REMARK 465 LEU B 39 REMARK 465 SER B 40 REMARK 465 ASP B 41 REMARK 465 ALA B 98 REMARK 465 ASN B 99 REMARK 465 GLY B 100 REMARK 465 SER B 101 REMARK 465 LEU B 102 REMARK 465 THR B 103 REMARK 465 ASP B 104 REMARK 465 GLN B 105 REMARK 465 ASP B 106 REMARK 465 ARG B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 ASP B 142 REMARK 465 THR B 143 REMARK 465 ALA B 144 REMARK 465 ALA B 145 REMARK 465 LEU B 146 REMARK 465 ASN B 147 REMARK 465 LYS B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 GLY B 151 REMARK 465 ALA B 152 REMARK 465 GLY B 186 REMARK 465 GLY B 187 REMARK 465 LYS B 188 REMARK 465 SER B 262 REMARK 465 ALA B 263 REMARK 465 LEU B 264 REMARK 465 ASP B 265 REMARK 465 TYR B 266 REMARK 465 GLY B 267 REMARK 465 GLU B 268 REMARK 465 GLY B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CE NZ REMARK 470 LEU A 102 CG CD1 CD2 REMARK 470 ILE B 111 CG1 CG2 CD1 REMARK 470 LYS B 203 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 243 CG - SE - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP B 173 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 86.02 -60.72 REMARK 500 LEU A 102 -93.55 -1.58 REMARK 500 ARG A 107 1.32 -62.84 REMARK 500 ASN A 158 -169.72 -105.99 REMARK 500 ASP B 129 -152.34 -82.45 REMARK 500 GLU B 130 -75.51 -48.65 REMARK 500 LYS B 140 47.85 -91.03 REMARK 500 LYS B 256 -71.65 -58.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 16 O REMARK 620 2 HOH A 17 O 80.6 REMARK 620 3 HOH A 23 O 162.6 89.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11259E RELATED DB: TARGETDB DBREF 3PWX A 39 268 UNP Q87JH9 Q87JH9_VIBPA 39 268 DBREF 3PWX B 39 268 UNP Q87JH9 Q87JH9_VIBPA 39 268 SEQADV 3PWX MSE A 37 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX SER A 38 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX SER A 84 UNP Q87JH9 ASN 84 CONFLICT SEQADV 3PWX GLY A 269 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 270 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 271 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 272 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 273 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 274 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS A 275 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX MSE B 37 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX SER B 38 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX SER B 84 UNP Q87JH9 ASN 84 CONFLICT SEQADV 3PWX GLY B 269 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 270 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 271 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 272 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 273 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 274 UNP Q87JH9 EXPRESSION TAG SEQADV 3PWX HIS B 275 UNP Q87JH9 EXPRESSION TAG SEQRES 1 A 239 MSE SER LEU SER ASP ASP PRO MSE ALA SER ILE LYS LEU SEQRES 2 A 239 LEU ASN LEU GLU ARG GLU ASN SER ALA ILE ALA GLN TYR SEQRES 3 A 239 GLN SER ASN ILE ALA ASN LEU LYS THR THR LEU SER SER SEQRES 4 A 239 GLN GLU THR HIS LEU ASP SER VAL SER GLU SER LEU LYS SEQRES 5 A 239 SER MSE ARG ASP ILE VAL LEU TRP GLY ALA ASN GLY SER SEQRES 6 A 239 LEU THR ASP GLN ASP ARG SER GLY MSE ILE THR GLU LEU SEQRES 7 A 239 LYS SER TYR ARG ASP SER ILE GLU SER SER PHE ASN ALA SEQRES 8 A 239 GLN ASP GLU GLU GLY HIS PHE LEU PHE SER GLY THR LYS SEQRES 9 A 239 THR ASP THR ALA ALA LEU ASN LYS SER SER GLY ALA TYR SEQRES 10 A 239 VAL VAL GLU GLY ASN SER ASP VAL ARG VAL VAL THR VAL SEQRES 11 A 239 ALA LYS GLY VAL THR MSE ASP SER ASN MSE THR ALA GLN SEQRES 12 A 239 GLU ILE LEU ASP ILE GLY GLY GLY LYS ASN VAL LEU ASN SEQRES 13 A 239 GLN ILE ASP ALA LEU ILE ALA GLU PHE GLU LYS PRO SER SEQRES 14 A 239 PRO ASN PHE GLN ALA GLU VAL ASP ALA SER LEU ASN ALA SEQRES 15 A 239 ILE ASP ASP THR MSE ALA ASN VAL LEU GLY ALA MSE THR SEQRES 16 A 239 GLU ILE GLY GLY ARG HIS ASN ASN LEU ASP LEU MSE ASP SEQRES 17 A 239 GLY ALA HIS SER GLU ASN LYS LEU PHE VAL ASP LYS VAL SEQRES 18 A 239 SER GLY ASP LEU SER ALA LEU ASP TYR GLY GLU GLY HIS SEQRES 19 A 239 HIS HIS HIS HIS HIS SEQRES 1 B 239 MSE SER LEU SER ASP ASP PRO MSE ALA SER ILE LYS LEU SEQRES 2 B 239 LEU ASN LEU GLU ARG GLU ASN SER ALA ILE ALA GLN TYR SEQRES 3 B 239 GLN SER ASN ILE ALA ASN LEU LYS THR THR LEU SER SER SEQRES 4 B 239 GLN GLU THR HIS LEU ASP SER VAL SER GLU SER LEU LYS SEQRES 5 B 239 SER MSE ARG ASP ILE VAL LEU TRP GLY ALA ASN GLY SER SEQRES 6 B 239 LEU THR ASP GLN ASP ARG SER GLY MSE ILE THR GLU LEU SEQRES 7 B 239 LYS SER TYR ARG ASP SER ILE GLU SER SER PHE ASN ALA SEQRES 8 B 239 GLN ASP GLU GLU GLY HIS PHE LEU PHE SER GLY THR LYS SEQRES 9 B 239 THR ASP THR ALA ALA LEU ASN LYS SER SER GLY ALA TYR SEQRES 10 B 239 VAL VAL GLU GLY ASN SER ASP VAL ARG VAL VAL THR VAL SEQRES 11 B 239 ALA LYS GLY VAL THR MSE ASP SER ASN MSE THR ALA GLN SEQRES 12 B 239 GLU ILE LEU ASP ILE GLY GLY GLY LYS ASN VAL LEU ASN SEQRES 13 B 239 GLN ILE ASP ALA LEU ILE ALA GLU PHE GLU LYS PRO SER SEQRES 14 B 239 PRO ASN PHE GLN ALA GLU VAL ASP ALA SER LEU ASN ALA SEQRES 15 B 239 ILE ASP ASP THR MSE ALA ASN VAL LEU GLY ALA MSE THR SEQRES 16 B 239 GLU ILE GLY GLY ARG HIS ASN ASN LEU ASP LEU MSE ASP SEQRES 17 B 239 GLY ALA HIS SER GLU ASN LYS LEU PHE VAL ASP LYS VAL SEQRES 18 B 239 SER GLY ASP LEU SER ALA LEU ASP TYR GLY GLU GLY HIS SEQRES 19 B 239 HIS HIS HIS HIS HIS MODRES 3PWX MSE A 44 MET SELENOMETHIONINE MODRES 3PWX MSE A 90 MET SELENOMETHIONINE MODRES 3PWX MSE A 110 MET SELENOMETHIONINE MODRES 3PWX MSE A 172 MET SELENOMETHIONINE MODRES 3PWX MSE A 176 MET SELENOMETHIONINE MODRES 3PWX MSE A 223 MET SELENOMETHIONINE MODRES 3PWX MSE A 230 MET SELENOMETHIONINE MODRES 3PWX MSE A 243 MET SELENOMETHIONINE MODRES 3PWX MSE B 44 MET SELENOMETHIONINE MODRES 3PWX MSE B 90 MET SELENOMETHIONINE MODRES 3PWX MSE B 110 MET SELENOMETHIONINE MODRES 3PWX MSE B 172 MET SELENOMETHIONINE MODRES 3PWX MSE B 176 MET SELENOMETHIONINE MODRES 3PWX MSE B 223 MET SELENOMETHIONINE MODRES 3PWX MSE B 230 MET SELENOMETHIONINE MODRES 3PWX MSE B 243 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 90 8 HET MSE A 110 8 HET MSE A 172 8 HET MSE A 176 8 HET MSE A 223 8 HET MSE A 230 8 HET MSE A 243 8 HET MSE B 44 8 HET MSE B 90 8 HET MSE B 110 8 HET MSE B 172 8 HET MSE B 176 8 HET MSE B 223 8 HET MSE B 230 8 HET MSE B 243 8 HET MG A 300 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 MG MG 2+ FORMUL 4 HOH *20(H2 O) HELIX 1 1 SER A 38 ASP A 41 5 4 HELIX 2 2 ASP A 42 ALA A 98 1 57 HELIX 3 3 ASP A 106 ASN A 126 1 21 HELIX 4 4 THR A 177 LEU A 182 1 6 HELIX 5 5 ASN A 189 LYS A 203 1 15 HELIX 6 6 ASN A 207 ASP A 260 1 54 HELIX 7 7 ASP B 42 GLY B 97 1 56 HELIX 8 8 MSE B 110 ASN B 126 1 17 HELIX 9 9 THR B 177 ASP B 183 1 7 HELIX 10 10 ASN B 189 ILE B 194 1 6 HELIX 11 11 ILE B 194 LYS B 203 1 10 HELIX 12 12 ASN B 207 LEU B 261 1 55 SHEET 1 A 2 LEU A 146 ASN A 147 0 SHEET 2 A 2 VAL A 154 VAL A 155 -1 O VAL A 154 N ASN A 147 SHEET 1 B 4 VAL A 163 ALA A 167 0 SHEET 2 B 4 VAL A 170 ASP A 173 -1 O MSE A 172 N VAL A 164 SHEET 3 B 4 VAL B 170 ASP B 173 -1 O THR B 171 N THR A 171 SHEET 4 B 4 VAL B 163 ALA B 167 -1 N VAL B 164 O MSE B 172 LINK C PRO A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ALA A 45 1555 1555 1.34 LINK C SER A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ARG A 91 1555 1555 1.33 LINK C GLY A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ILE A 111 1555 1555 1.33 LINK C THR A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N ASP A 173 1555 1555 1.34 LINK C ASN A 175 N MSE A 176 1555 1555 1.34 LINK C MSE A 176 N THR A 177 1555 1555 1.33 LINK C THR A 222 N MSE A 223 1555 1555 1.30 LINK C MSE A 223 N ALA A 224 1555 1555 1.33 LINK C ALA A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N THR A 231 1555 1555 1.33 LINK C LEU A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N ASP A 244 1555 1555 1.31 LINK C PRO B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N ALA B 45 1555 1555 1.33 LINK C SER B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N ARG B 91 1555 1555 1.33 LINK C MSE B 110 N ILE B 111 1555 1555 1.33 LINK C THR B 171 N MSE B 172 1555 1555 1.32 LINK C MSE B 172 N ASP B 173 1555 1555 1.33 LINK C ASN B 175 N MSE B 176 1555 1555 1.34 LINK C MSE B 176 N THR B 177 1555 1555 1.33 LINK C THR B 222 N MSE B 223 1555 1555 1.32 LINK C MSE B 223 N ALA B 224 1555 1555 1.34 LINK C ALA B 229 N MSE B 230 1555 1555 1.32 LINK C MSE B 230 N THR B 231 1555 1555 1.33 LINK C LEU B 242 N MSE B 243 1555 1555 1.33 LINK C MSE B 243 N ASP B 244 1555 1555 1.34 LINK O HOH A 16 MG MG A 300 1555 1555 1.91 LINK O HOH A 17 MG MG A 300 1555 1555 2.02 LINK O HOH A 23 MG MG A 300 1555 1555 2.34 SITE 1 AC1 4 HOH A 16 HOH A 17 HOH A 23 HIS A 133 CRYST1 100.687 63.509 80.570 90.00 107.86 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009932 0.000000 0.003200 0.00000 SCALE2 0.000000 0.015746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013040 0.00000