data_3PX9 # _entry.id 3PX9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PX9 pdb_00003px9 10.2210/pdb3px9/pdb RCSB RCSB062924 ? ? WWPDB D_1000062924 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-09-21 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3PX9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-12-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3PX8 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jasheway, K.R.' 1 'Robertus, J.D.' 2 # _citation.id primary _citation.title '7-Substituted pterins provide a new direction for ricin A chain inhibitors.' _citation.journal_abbrev Eur.J.Med.Chem. _citation.journal_volume 46 _citation.page_first 3608 _citation.page_last 3615 _citation.year 2011 _citation.journal_id_ASTM EJMCA5 _citation.country FR _citation.journal_id_ISSN 0223-5234 _citation.journal_id_CSD 0493 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21641093 _citation.pdbx_database_id_DOI 10.1016/j.ejmech.2011.05.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pruet, J.M.' 1 ? primary 'Jasheway, K.R.' 2 ? primary 'Manzano, L.A.' 3 ? primary 'Bai, Y.' 4 ? primary 'Anslyn, E.V.' 5 ? primary 'Robertus, J.D.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Preproricin 28935.625 1 ? ? 'UNP residues 18-275' ? 2 non-polymer syn '2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide' 286.246 1 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG YRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPT LARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVY DVSILIPIIALMVYRCAP ; _entity_poly.pdbx_seq_one_letter_code_can ;KQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG YRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPT LARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVY DVSILIPIIALMVYRCAP ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide' JP3 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLN n 1 3 TYR n 1 4 PRO n 1 5 ILE n 1 6 ILE n 1 7 ASN n 1 8 PHE n 1 9 THR n 1 10 THR n 1 11 ALA n 1 12 GLY n 1 13 ALA n 1 14 THR n 1 15 VAL n 1 16 GLN n 1 17 SER n 1 18 TYR n 1 19 THR n 1 20 ASN n 1 21 PHE n 1 22 ILE n 1 23 ARG n 1 24 ALA n 1 25 VAL n 1 26 ARG n 1 27 GLY n 1 28 ARG n 1 29 LEU n 1 30 THR n 1 31 THR n 1 32 GLY n 1 33 ALA n 1 34 ASP n 1 35 VAL n 1 36 ARG n 1 37 HIS n 1 38 GLU n 1 39 ILE n 1 40 PRO n 1 41 VAL n 1 42 LEU n 1 43 PRO n 1 44 ASN n 1 45 ARG n 1 46 VAL n 1 47 GLY n 1 48 LEU n 1 49 PRO n 1 50 ILE n 1 51 ASN n 1 52 GLN n 1 53 ARG n 1 54 PHE n 1 55 ILE n 1 56 LEU n 1 57 VAL n 1 58 GLU n 1 59 LEU n 1 60 SER n 1 61 ASN n 1 62 HIS n 1 63 ALA n 1 64 GLU n 1 65 LEU n 1 66 SER n 1 67 VAL n 1 68 THR n 1 69 LEU n 1 70 ALA n 1 71 LEU n 1 72 ASP n 1 73 VAL n 1 74 THR n 1 75 ASN n 1 76 ALA n 1 77 TYR n 1 78 VAL n 1 79 VAL n 1 80 GLY n 1 81 TYR n 1 82 ARG n 1 83 ALA n 1 84 GLY n 1 85 ASN n 1 86 SER n 1 87 ALA n 1 88 TYR n 1 89 PHE n 1 90 PHE n 1 91 HIS n 1 92 PRO n 1 93 ASP n 1 94 ASN n 1 95 GLN n 1 96 GLU n 1 97 ASP n 1 98 ALA n 1 99 GLU n 1 100 ALA n 1 101 ILE n 1 102 THR n 1 103 HIS n 1 104 LEU n 1 105 PHE n 1 106 THR n 1 107 ASP n 1 108 VAL n 1 109 GLN n 1 110 ASN n 1 111 ARG n 1 112 TYR n 1 113 THR n 1 114 PHE n 1 115 ALA n 1 116 PHE n 1 117 GLY n 1 118 GLY n 1 119 ASN n 1 120 TYR n 1 121 ASP n 1 122 ARG n 1 123 LEU n 1 124 GLU n 1 125 GLN n 1 126 LEU n 1 127 ALA n 1 128 GLY n 1 129 ASN n 1 130 LEU n 1 131 ARG n 1 132 GLU n 1 133 ASN n 1 134 ILE n 1 135 GLU n 1 136 LEU n 1 137 GLY n 1 138 ASN n 1 139 GLY n 1 140 PRO n 1 141 LEU n 1 142 GLU n 1 143 GLU n 1 144 ALA n 1 145 ILE n 1 146 SER n 1 147 ALA n 1 148 LEU n 1 149 TYR n 1 150 TYR n 1 151 TYR n 1 152 SER n 1 153 THR n 1 154 GLY n 1 155 GLY n 1 156 THR n 1 157 GLN n 1 158 LEU n 1 159 PRO n 1 160 THR n 1 161 LEU n 1 162 ALA n 1 163 ARG n 1 164 SER n 1 165 PHE n 1 166 ILE n 1 167 ILE n 1 168 CYS n 1 169 ILE n 1 170 GLN n 1 171 MET n 1 172 ILE n 1 173 SER n 1 174 GLU n 1 175 ALA n 1 176 ALA n 1 177 ARG n 1 178 PHE n 1 179 GLN n 1 180 TYR n 1 181 ILE n 1 182 GLU n 1 183 GLY n 1 184 GLU n 1 185 MET n 1 186 ARG n 1 187 THR n 1 188 ARG n 1 189 ILE n 1 190 ARG n 1 191 TYR n 1 192 ASN n 1 193 ARG n 1 194 ARG n 1 195 SER n 1 196 ALA n 1 197 PRO n 1 198 ASP n 1 199 PRO n 1 200 SER n 1 201 VAL n 1 202 ILE n 1 203 THR n 1 204 LEU n 1 205 GLU n 1 206 ASN n 1 207 SER n 1 208 TRP n 1 209 GLY n 1 210 ARG n 1 211 LEU n 1 212 SER n 1 213 THR n 1 214 ALA n 1 215 ILE n 1 216 GLN n 1 217 GLU n 1 218 SER n 1 219 ASN n 1 220 GLN n 1 221 GLY n 1 222 ALA n 1 223 PHE n 1 224 ALA n 1 225 SER n 1 226 PRO n 1 227 ILE n 1 228 GLN n 1 229 LEU n 1 230 GLN n 1 231 ARG n 1 232 ARG n 1 233 ASN n 1 234 GLY n 1 235 SER n 1 236 LYS n 1 237 PHE n 1 238 SER n 1 239 VAL n 1 240 TYR n 1 241 ASP n 1 242 VAL n 1 243 SER n 1 244 ILE n 1 245 LEU n 1 246 ILE n 1 247 PRO n 1 248 ILE n 1 249 ILE n 1 250 ALA n 1 251 LEU n 1 252 MET n 1 253 VAL n 1 254 TYR n 1 255 ARG n 1 256 CYS n 1 257 ALA n 1 258 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Castor bean' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ricinus communis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3988 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM101 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUTA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JP3 non-polymer . '2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide' ? 'C12 H10 N6 O3' 286.246 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 4 4 LYS LYS X . n A 1 2 GLN 2 5 5 GLN GLN X . n A 1 3 TYR 3 6 6 TYR TYR X . n A 1 4 PRO 4 7 7 PRO PRO X . n A 1 5 ILE 5 8 8 ILE ILE X . n A 1 6 ILE 6 9 9 ILE ILE X . n A 1 7 ASN 7 10 10 ASN ASN X . n A 1 8 PHE 8 11 11 PHE PHE X . n A 1 9 THR 9 12 12 THR THR X . n A 1 10 THR 10 13 13 THR THR X . n A 1 11 ALA 11 14 14 ALA ALA X . n A 1 12 GLY 12 15 15 GLY GLY X . n A 1 13 ALA 13 16 16 ALA ALA X . n A 1 14 THR 14 17 17 THR THR X . n A 1 15 VAL 15 18 18 VAL VAL X . n A 1 16 GLN 16 19 19 GLN GLN X . n A 1 17 SER 17 20 20 SER SER X . n A 1 18 TYR 18 21 21 TYR TYR X . n A 1 19 THR 19 22 22 THR THR X . n A 1 20 ASN 20 23 23 ASN ASN X . n A 1 21 PHE 21 24 24 PHE PHE X . n A 1 22 ILE 22 25 25 ILE ILE X . n A 1 23 ARG 23 26 26 ARG ARG X . n A 1 24 ALA 24 27 27 ALA ALA X . n A 1 25 VAL 25 28 28 VAL VAL X . n A 1 26 ARG 26 29 29 ARG ARG X . n A 1 27 GLY 27 30 30 GLY GLY X . n A 1 28 ARG 28 31 31 ARG ARG X . n A 1 29 LEU 29 32 32 LEU LEU X . n A 1 30 THR 30 33 33 THR THR X . n A 1 31 THR 31 34 34 THR THR X . n A 1 32 GLY 32 35 35 GLY GLY X . n A 1 33 ALA 33 36 36 ALA ALA X . n A 1 34 ASP 34 37 37 ASP ASP X . n A 1 35 VAL 35 38 38 VAL VAL X . n A 1 36 ARG 36 39 39 ARG ARG X . n A 1 37 HIS 37 40 40 HIS HIS X . n A 1 38 GLU 38 41 41 GLU GLU X . n A 1 39 ILE 39 42 42 ILE ILE X . n A 1 40 PRO 40 43 43 PRO PRO X . n A 1 41 VAL 41 44 44 VAL VAL X . n A 1 42 LEU 42 45 45 LEU LEU X . n A 1 43 PRO 43 46 46 PRO PRO X . n A 1 44 ASN 44 47 47 ASN ASN X . n A 1 45 ARG 45 48 48 ARG ARG X . n A 1 46 VAL 46 49 49 VAL VAL X . n A 1 47 GLY 47 50 50 GLY GLY X . n A 1 48 LEU 48 51 51 LEU LEU X . n A 1 49 PRO 49 52 52 PRO PRO X . n A 1 50 ILE 50 53 53 ILE ILE X . n A 1 51 ASN 51 54 54 ASN ASN X . n A 1 52 GLN 52 55 55 GLN GLN X . n A 1 53 ARG 53 56 56 ARG ARG X . n A 1 54 PHE 54 57 57 PHE PHE X . n A 1 55 ILE 55 58 58 ILE ILE X . n A 1 56 LEU 56 59 59 LEU LEU X . n A 1 57 VAL 57 60 60 VAL VAL X . n A 1 58 GLU 58 61 61 GLU GLU X . n A 1 59 LEU 59 62 62 LEU LEU X . n A 1 60 SER 60 63 63 SER SER X . n A 1 61 ASN 61 64 64 ASN ASN X . n A 1 62 HIS 62 65 65 HIS HIS X . n A 1 63 ALA 63 66 66 ALA ALA X . n A 1 64 GLU 64 67 67 GLU GLU X . n A 1 65 LEU 65 68 68 LEU LEU X . n A 1 66 SER 66 69 69 SER SER X . n A 1 67 VAL 67 70 70 VAL VAL X . n A 1 68 THR 68 71 71 THR THR X . n A 1 69 LEU 69 72 72 LEU LEU X . n A 1 70 ALA 70 73 73 ALA ALA X . n A 1 71 LEU 71 74 74 LEU LEU X . n A 1 72 ASP 72 75 75 ASP ASP X . n A 1 73 VAL 73 76 76 VAL VAL X . n A 1 74 THR 74 77 77 THR THR X . n A 1 75 ASN 75 78 78 ASN ASN X . n A 1 76 ALA 76 79 79 ALA ALA X . n A 1 77 TYR 77 80 80 TYR TYR X . n A 1 78 VAL 78 81 81 VAL VAL X . n A 1 79 VAL 79 82 82 VAL VAL X . n A 1 80 GLY 80 83 83 GLY GLY X . n A 1 81 TYR 81 84 84 TYR TYR X . n A 1 82 ARG 82 85 85 ARG ARG X . n A 1 83 ALA 83 86 86 ALA ALA X . n A 1 84 GLY 84 87 87 GLY GLY X . n A 1 85 ASN 85 88 88 ASN ASN X . n A 1 86 SER 86 89 89 SER SER X . n A 1 87 ALA 87 90 90 ALA ALA X . n A 1 88 TYR 88 91 91 TYR TYR X . n A 1 89 PHE 89 92 92 PHE PHE X . n A 1 90 PHE 90 93 93 PHE PHE X . n A 1 91 HIS 91 94 94 HIS HIS X . n A 1 92 PRO 92 95 95 PRO PRO X . n A 1 93 ASP 93 96 96 ASP ASP X . n A 1 94 ASN 94 97 97 ASN ASN X . n A 1 95 GLN 95 98 98 GLN GLN X . n A 1 96 GLU 96 99 99 GLU GLU X . n A 1 97 ASP 97 100 100 ASP ASP X . n A 1 98 ALA 98 101 101 ALA ALA X . n A 1 99 GLU 99 102 102 GLU GLU X . n A 1 100 ALA 100 103 103 ALA ALA X . n A 1 101 ILE 101 104 104 ILE ILE X . n A 1 102 THR 102 105 105 THR THR X . n A 1 103 HIS 103 106 106 HIS HIS X . n A 1 104 LEU 104 107 107 LEU LEU X . n A 1 105 PHE 105 108 108 PHE PHE X . n A 1 106 THR 106 109 109 THR THR X . n A 1 107 ASP 107 110 110 ASP ASP X . n A 1 108 VAL 108 111 111 VAL VAL X . n A 1 109 GLN 109 112 112 GLN GLN X . n A 1 110 ASN 110 113 113 ASN ASN X . n A 1 111 ARG 111 114 114 ARG ARG X . n A 1 112 TYR 112 115 115 TYR TYR X . n A 1 113 THR 113 116 116 THR THR X . n A 1 114 PHE 114 117 117 PHE PHE X . n A 1 115 ALA 115 118 118 ALA ALA X . n A 1 116 PHE 116 119 119 PHE PHE X . n A 1 117 GLY 117 120 120 GLY GLY X . n A 1 118 GLY 118 121 121 GLY GLY X . n A 1 119 ASN 119 122 122 ASN ASN X . n A 1 120 TYR 120 123 123 TYR TYR X . n A 1 121 ASP 121 124 124 ASP ASP X . n A 1 122 ARG 122 125 125 ARG ARG X . n A 1 123 LEU 123 126 126 LEU LEU X . n A 1 124 GLU 124 127 127 GLU GLU X . n A 1 125 GLN 125 128 128 GLN GLN X . n A 1 126 LEU 126 129 129 LEU LEU X . n A 1 127 ALA 127 130 130 ALA ALA X . n A 1 128 GLY 128 131 131 GLY GLY X . n A 1 129 ASN 129 132 132 ASN ASN X . n A 1 130 LEU 130 133 133 LEU LEU X . n A 1 131 ARG 131 134 134 ARG ARG X . n A 1 132 GLU 132 135 135 GLU GLU X . n A 1 133 ASN 133 136 136 ASN ASN X . n A 1 134 ILE 134 137 137 ILE ILE X . n A 1 135 GLU 135 138 138 GLU GLU X . n A 1 136 LEU 136 139 139 LEU LEU X . n A 1 137 GLY 137 140 140 GLY GLY X . n A 1 138 ASN 138 141 141 ASN ASN X . n A 1 139 GLY 139 142 142 GLY GLY X . n A 1 140 PRO 140 143 143 PRO PRO X . n A 1 141 LEU 141 144 144 LEU LEU X . n A 1 142 GLU 142 145 145 GLU GLU X . n A 1 143 GLU 143 146 146 GLU GLU X . n A 1 144 ALA 144 147 147 ALA ALA X . n A 1 145 ILE 145 148 148 ILE ILE X . n A 1 146 SER 146 149 149 SER SER X . n A 1 147 ALA 147 150 150 ALA ALA X . n A 1 148 LEU 148 151 151 LEU LEU X . n A 1 149 TYR 149 152 152 TYR TYR X . n A 1 150 TYR 150 153 153 TYR TYR X . n A 1 151 TYR 151 154 154 TYR TYR X . n A 1 152 SER 152 155 155 SER SER X . n A 1 153 THR 153 156 156 THR THR X . n A 1 154 GLY 154 157 157 GLY GLY X . n A 1 155 GLY 155 158 158 GLY GLY X . n A 1 156 THR 156 159 159 THR THR X . n A 1 157 GLN 157 160 160 GLN GLN X . n A 1 158 LEU 158 161 161 LEU LEU X . n A 1 159 PRO 159 162 162 PRO PRO X . n A 1 160 THR 160 163 163 THR THR X . n A 1 161 LEU 161 164 164 LEU LEU X . n A 1 162 ALA 162 165 165 ALA ALA X . n A 1 163 ARG 163 166 166 ARG ARG X . n A 1 164 SER 164 167 167 SER SER X . n A 1 165 PHE 165 168 168 PHE PHE X . n A 1 166 ILE 166 169 169 ILE ILE X . n A 1 167 ILE 167 170 170 ILE ILE X . n A 1 168 CYS 168 171 171 CYS CYS X . n A 1 169 ILE 169 172 172 ILE ILE X . n A 1 170 GLN 170 173 173 GLN GLN X . n A 1 171 MET 171 174 174 MET MET X . n A 1 172 ILE 172 175 175 ILE ILE X . n A 1 173 SER 173 176 176 SER SER X . n A 1 174 GLU 174 177 177 GLU GLU X . n A 1 175 ALA 175 178 178 ALA ALA X . n A 1 176 ALA 176 179 179 ALA ALA X . n A 1 177 ARG 177 180 180 ARG ARG X . n A 1 178 PHE 178 181 181 PHE PHE X . n A 1 179 GLN 179 182 182 GLN GLN X . n A 1 180 TYR 180 183 183 TYR TYR X . n A 1 181 ILE 181 184 184 ILE ILE X . n A 1 182 GLU 182 185 185 GLU GLU X . n A 1 183 GLY 183 186 186 GLY GLY X . n A 1 184 GLU 184 187 187 GLU GLU X . n A 1 185 MET 185 188 188 MET MET X . n A 1 186 ARG 186 189 189 ARG ARG X . n A 1 187 THR 187 190 190 THR THR X . n A 1 188 ARG 188 191 191 ARG ARG X . n A 1 189 ILE 189 192 192 ILE ILE X . n A 1 190 ARG 190 193 193 ARG ARG X . n A 1 191 TYR 191 194 194 TYR TYR X . n A 1 192 ASN 192 195 195 ASN ASN X . n A 1 193 ARG 193 196 196 ARG ARG X . n A 1 194 ARG 194 197 197 ARG ARG X . n A 1 195 SER 195 198 198 SER SER X . n A 1 196 ALA 196 199 199 ALA ALA X . n A 1 197 PRO 197 200 200 PRO PRO X . n A 1 198 ASP 198 201 201 ASP ASP X . n A 1 199 PRO 199 202 202 PRO PRO X . n A 1 200 SER 200 203 203 SER SER X . n A 1 201 VAL 201 204 204 VAL VAL X . n A 1 202 ILE 202 205 205 ILE ILE X . n A 1 203 THR 203 206 206 THR THR X . n A 1 204 LEU 204 207 207 LEU LEU X . n A 1 205 GLU 205 208 208 GLU GLU X . n A 1 206 ASN 206 209 209 ASN ASN X . n A 1 207 SER 207 210 210 SER SER X . n A 1 208 TRP 208 211 211 TRP TRP X . n A 1 209 GLY 209 212 212 GLY GLY X . n A 1 210 ARG 210 213 213 ARG ARG X . n A 1 211 LEU 211 214 214 LEU LEU X . n A 1 212 SER 212 215 215 SER SER X . n A 1 213 THR 213 216 216 THR THR X . n A 1 214 ALA 214 217 217 ALA ALA X . n A 1 215 ILE 215 218 218 ILE ILE X . n A 1 216 GLN 216 219 219 GLN GLN X . n A 1 217 GLU 217 220 220 GLU GLU X . n A 1 218 SER 218 221 221 SER SER X . n A 1 219 ASN 219 222 222 ASN ASN X . n A 1 220 GLN 220 223 223 GLN GLN X . n A 1 221 GLY 221 224 224 GLY GLY X . n A 1 222 ALA 222 225 225 ALA ALA X . n A 1 223 PHE 223 226 226 PHE PHE X . n A 1 224 ALA 224 227 227 ALA ALA X . n A 1 225 SER 225 228 228 SER SER X . n A 1 226 PRO 226 229 229 PRO PRO X . n A 1 227 ILE 227 230 230 ILE ILE X . n A 1 228 GLN 228 231 231 GLN GLN X . n A 1 229 LEU 229 232 232 LEU LEU X . n A 1 230 GLN 230 233 233 GLN GLN X . n A 1 231 ARG 231 234 234 ARG ARG X . n A 1 232 ARG 232 235 235 ARG ARG X . n A 1 233 ASN 233 236 236 ASN ASN X . n A 1 234 GLY 234 237 237 GLY GLY X . n A 1 235 SER 235 238 238 SER SER X . n A 1 236 LYS 236 239 239 LYS LYS X . n A 1 237 PHE 237 240 240 PHE PHE X . n A 1 238 SER 238 241 241 SER SER X . n A 1 239 VAL 239 242 242 VAL VAL X . n A 1 240 TYR 240 243 243 TYR TYR X . n A 1 241 ASP 241 244 244 ASP ASP X . n A 1 242 VAL 242 245 245 VAL VAL X . n A 1 243 SER 243 246 246 SER SER X . n A 1 244 ILE 244 247 247 ILE ILE X . n A 1 245 LEU 245 248 248 LEU LEU X . n A 1 246 ILE 246 249 249 ILE ILE X . n A 1 247 PRO 247 250 250 PRO PRO X . n A 1 248 ILE 248 251 251 ILE ILE X . n A 1 249 ILE 249 252 252 ILE ILE X . n A 1 250 ALA 250 253 253 ALA ALA X . n A 1 251 LEU 251 254 254 LEU LEU X . n A 1 252 MET 252 255 255 MET MET X . n A 1 253 VAL 253 256 256 VAL VAL X . n A 1 254 TYR 254 257 257 TYR TYR X . n A 1 255 ARG 255 258 258 ARG ARG X . n A 1 256 CYS 256 259 259 CYS CYS X . n A 1 257 ALA 257 260 260 ALA ALA X . n A 1 258 PRO 258 261 261 PRO PRO X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JP3 1 1 1 JP3 JP3 X . C 3 HOH 1 2 2 HOH HOH X . C 3 HOH 2 3 3 HOH HOH X . C 3 HOH 3 262 1 HOH HOH X . C 3 HOH 4 263 4 HOH HOH X . C 3 HOH 5 264 5 HOH HOH X . C 3 HOH 6 265 6 HOH HOH X . C 3 HOH 7 266 7 HOH HOH X . C 3 HOH 8 267 9 HOH HOH X . C 3 HOH 9 268 10 HOH HOH X . C 3 HOH 10 269 12 HOH HOH X . C 3 HOH 11 270 13 HOH HOH X . C 3 HOH 12 271 14 HOH HOH X . C 3 HOH 13 272 15 HOH HOH X . C 3 HOH 14 273 16 HOH HOH X . C 3 HOH 15 274 17 HOH HOH X . C 3 HOH 16 275 18 HOH HOH X . C 3 HOH 17 276 19 HOH HOH X . C 3 HOH 18 277 20 HOH HOH X . C 3 HOH 19 278 22 HOH HOH X . C 3 HOH 20 279 23 HOH HOH X . C 3 HOH 21 280 24 HOH HOH X . C 3 HOH 22 281 25 HOH HOH X . C 3 HOH 23 282 26 HOH HOH X . C 3 HOH 24 283 27 HOH HOH X . C 3 HOH 25 284 28 HOH HOH X . C 3 HOH 26 285 29 HOH HOH X . C 3 HOH 27 286 30 HOH HOH X . C 3 HOH 28 287 31 HOH HOH X . C 3 HOH 29 288 32 HOH HOH X . C 3 HOH 30 289 33 HOH HOH X . C 3 HOH 31 290 34 HOH HOH X . C 3 HOH 32 291 36 HOH HOH X . C 3 HOH 33 292 37 HOH HOH X . C 3 HOH 34 293 38 HOH HOH X . C 3 HOH 35 294 39 HOH HOH X . C 3 HOH 36 295 40 HOH HOH X . C 3 HOH 37 296 41 HOH HOH X . C 3 HOH 38 297 43 HOH HOH X . C 3 HOH 39 298 44 HOH HOH X . C 3 HOH 40 299 45 HOH HOH X . C 3 HOH 41 300 48 HOH HOH X . C 3 HOH 42 301 51 HOH HOH X . C 3 HOH 43 302 52 HOH HOH X . C 3 HOH 44 303 53 HOH HOH X . C 3 HOH 45 304 56 HOH HOH X . C 3 HOH 46 305 57 HOH HOH X . C 3 HOH 47 306 59 HOH HOH X . C 3 HOH 48 307 61 HOH HOH X . C 3 HOH 49 308 62 HOH HOH X . C 3 HOH 50 309 64 HOH HOH X . C 3 HOH 51 310 65 HOH HOH X . C 3 HOH 52 311 72 HOH HOH X . C 3 HOH 53 312 73 HOH HOH X . C 3 HOH 54 313 74 HOH HOH X . C 3 HOH 55 314 76 HOH HOH X . C 3 HOH 56 315 78 HOH HOH X . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 StructureStudio . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.length_a 42.444 _cell.length_b 67.328 _cell.length_c 49.462 _cell.angle_alpha 90.000 _cell.angle_beta 112.520 _cell.angle_gamma 90.000 _cell.entry_id 3PX9 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3PX9 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3PX9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '4.1% PEG 8000, 75 mM Bicine pH 8.9, 10 mM 2-mercaptoethanol, 1 mM EDTA, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2010-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Graphite _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3PX9 _reflns.d_resolution_high 1.890 _reflns.d_resolution_low 50.000 _reflns.number_obs 19711 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_netI_over_sigmaI 23.900 _reflns.pdbx_chi_squared 2.564 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 95.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.890 1.920 ? ? ? 0.432 ? ? 1.582 3.500 ? 936 91.500 1 1 1.920 1.960 ? ? ? 0.371 ? ? 1.633 3.700 ? 959 94.700 2 1 1.960 2.000 ? ? ? 0.308 ? ? 1.793 3.800 ? 950 92.900 3 1 2.000 2.040 ? ? ? 0.264 ? ? 1.912 3.800 ? 971 94.300 4 1 2.040 2.080 ? ? ? 0.229 ? ? 1.937 3.800 ? 953 94.600 5 1 2.080 2.130 ? ? ? 0.193 ? ? 2.093 3.800 ? 963 92.800 6 1 2.130 2.180 ? ? ? 0.165 ? ? 2.212 3.800 ? 970 96.300 7 1 2.180 2.240 ? ? ? 0.143 ? ? 2.403 3.800 ? 970 93.800 8 1 2.240 2.310 ? ? ? 0.127 ? ? 2.656 3.800 ? 980 96.500 9 1 2.310 2.380 ? ? ? 0.115 ? ? 2.625 3.800 ? 971 95.200 10 1 2.380 2.470 ? ? ? 0.100 ? ? 2.647 3.800 ? 1008 96.600 11 1 2.470 2.570 ? ? ? 0.090 ? ? 2.922 3.800 ? 980 96.400 12 1 2.570 2.680 ? ? ? 0.079 ? ? 3.200 3.700 ? 982 96.100 13 1 2.680 2.820 ? ? ? 0.068 ? ? 3.125 3.700 ? 1009 96.700 14 1 2.820 3.000 ? ? ? 0.062 ? ? 3.485 3.800 ? 999 98.000 15 1 3.000 3.230 ? ? ? 0.054 ? ? 3.565 3.800 ? 1000 97.600 16 1 3.230 3.560 ? ? ? 0.050 ? ? 3.579 3.800 ? 1009 97.500 17 1 3.560 4.070 ? ? ? 0.044 ? ? 3.272 3.800 ? 1008 98.000 18 1 4.070 5.130 ? ? ? 0.038 ? ? 2.555 3.800 ? 1035 98.500 19 1 5.130 50.000 ? ? ? 0.028 ? ? 1.788 3.700 ? 1058 99.100 20 1 # _refine.entry_id 3PX9 _refine.ls_d_res_high 1.8900 _refine.ls_d_res_low 33.67 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.6400 _refine.ls_number_reflns_obs 19694 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_obs 0.1971 _refine.ls_R_factor_R_work 0.1948 _refine.ls_wR_factor_R_work 0.2043 _refine.ls_R_factor_R_free 0.2386 _refine.ls_wR_factor_R_free 0.2522 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1009 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.3797 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.1100 _refine.aniso_B[2][2] -0.8800 _refine.aniso_B[3][3] 1.7200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.3600 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9490 _refine.overall_SU_R_Cruickshank_DPI 0.1735 _refine.overall_SU_R_free 0.1571 _refine.pdbx_overall_ESU_R_Free 0.1570 _refine.overall_SU_ML 0.1190 _refine.overall_SU_B 4.0890 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8327 _refine.B_iso_max 81.430 _refine.B_iso_min 20.000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.ls_R_factor_all ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2041 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 2118 _refine_hist.d_res_high 1.8900 _refine_hist.d_res_low 33.67 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2107 0.023 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1906 0.000 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2866 1.820 1.960 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 4392 0.807 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 257 5.920 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 105 33.646 23.048 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 331 15.074 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21 22.604 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 317 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2386 0.010 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 469 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1284 1.197 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 523 0.305 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2076 2.038 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 823 3.025 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 790 5.006 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.89 _refine_ls_shell.d_res_low 1.9410 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.5200 _refine_ls_shell.number_reflns_R_work 1277 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3010 _refine_ls_shell.R_factor_R_free 0.3900 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1349 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PX9 _struct.title 'RTA in complex with N-(furanylmethyl)-7-carbamoyl-pterin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PX9 _struct_keywords.text 'Ricin, toxin, protein-ligand complex, hydrolase, ribosome inactivating protein, N-glycosidase, pterin, hydrolase-inhibitor complex' _struct_keywords.pdbx_keywords hydrolase/inhibitor # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D6MWP9_RICCO _struct_ref.pdbx_db_accession D6MWP9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG YRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPT LARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVY DVSILIPIIALMVYRCAP ; _struct_ref.pdbx_align_begin 18 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PX9 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D6MWP9 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 275 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 261 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? THR A 30 ? THR X 17 THR X 33 1 ? 17 HELX_P HELX_P2 2 PRO A 49 ? GLN A 52 ? PRO X 52 GLN X 55 5 ? 4 HELX_P HELX_P3 3 ASN A 94 ? THR A 102 ? ASN X 97 THR X 105 1 ? 9 HELX_P HELX_P4 4 ASN A 119 ? GLY A 128 ? ASN X 122 GLY X 131 1 ? 10 HELX_P HELX_P5 5 LEU A 130 ? ILE A 134 ? LEU X 133 ILE X 137 5 ? 5 HELX_P HELX_P6 6 GLY A 137 ? TYR A 151 ? GLY X 140 TYR X 154 1 ? 15 HELX_P HELX_P7 7 GLN A 157 ? PHE A 178 ? GLN X 160 PHE X 181 1 ? 22 HELX_P HELX_P8 8 PHE A 178 ? TYR A 191 ? PHE X 181 TYR X 194 1 ? 14 HELX_P HELX_P9 9 ASP A 198 ? SER A 207 ? ASP X 201 SER X 210 1 ? 10 HELX_P HELX_P10 10 SER A 207 ? GLU A 217 ? SER X 210 GLU X 220 1 ? 11 HELX_P HELX_P11 11 SER A 243 ? ILE A 246 ? SER X 246 ILE X 249 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 5 ? THR A 9 ? ILE X 8 THR X 12 A 2 PHE A 54 ? SER A 60 ? PHE X 57 SER X 63 A 3 SER A 66 ? ASP A 72 ? SER X 69 ASP X 75 A 4 VAL A 78 ? ALA A 83 ? VAL X 81 ALA X 86 A 5 SER A 86 ? PHE A 89 ? SER X 89 PHE X 92 A 6 ASN A 110 ? THR A 113 ? ASN X 113 THR X 116 B 1 VAL A 35 ? ARG A 36 ? VAL X 38 ARG X 39 B 2 ILE A 39 ? PRO A 40 ? ILE X 42 PRO X 43 C 1 ALA A 222 ? GLN A 230 ? ALA X 225 GLN X 233 C 2 LYS A 236 ? ASP A 241 ? LYS X 239 ASP X 244 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 8 ? N PHE X 11 O GLU A 58 ? O GLU X 61 A 2 3 N LEU A 59 ? N LEU X 62 O VAL A 67 ? O VAL X 70 A 3 4 N ALA A 70 ? N ALA X 73 O VAL A 79 ? O VAL X 82 A 4 5 N TYR A 81 ? N TYR X 84 O TYR A 88 ? O TYR X 91 A 5 6 N ALA A 87 ? N ALA X 90 O ASN A 110 ? O ASN X 113 B 1 2 N ARG A 36 ? N ARG X 39 O ILE A 39 ? O ILE X 42 C 1 2 N ILE A 227 ? N ILE X 230 O VAL A 239 ? O VAL X 242 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id JP3 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE JP3 X 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ALA A 76 ? ALA X 79 . ? 1_555 ? 2 AC1 10 TYR A 77 ? TYR X 80 . ? 1_555 ? 3 AC1 10 VAL A 78 ? VAL X 81 . ? 1_555 ? 4 AC1 10 GLY A 118 ? GLY X 121 . ? 1_555 ? 5 AC1 10 TYR A 120 ? TYR X 123 . ? 1_555 ? 6 AC1 10 ILE A 169 ? ILE X 172 . ? 1_555 ? 7 AC1 10 SER A 173 ? SER X 176 . ? 1_555 ? 8 AC1 10 ARG A 177 ? ARG X 180 . ? 1_555 ? 9 AC1 10 ASN A 206 ? ASN X 209 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH X 262 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU X 41 ? ? 82.74 -2.61 2 1 ILE X 175 ? ? -114.37 -72.20 # _pdbx_phasing_MR.entry_id 3PX9 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.240 _pdbx_phasing_MR.d_res_low_rotation 33.640 _pdbx_phasing_MR.d_res_high_translation 2.240 _pdbx_phasing_MR.d_res_low_translation 33.640 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 JP3 C1 C N N 183 JP3 N1 N N N 184 JP3 O1 O N N 185 JP3 C2 C N N 186 JP3 N2 N N N 187 JP3 O2 O N N 188 JP3 C3 C Y N 189 JP3 N3 N N N 190 JP3 O3 O Y N 191 JP3 C4 C Y N 192 JP3 N4 N Y N 193 JP3 C5 C Y N 194 JP3 N5 N Y N 195 JP3 C6 C Y N 196 JP3 N6 N N N 197 JP3 C7 C N N 198 JP3 C8 C N N 199 JP3 C9 C Y N 200 JP3 C10 C Y N 201 JP3 C11 C Y N 202 JP3 C12 C Y N 203 JP3 HN1 H N N 204 JP3 HN1A H N N 205 JP3 HN2 H N N 206 JP3 H6 H N N 207 JP3 HN6 H N N 208 JP3 H8 H N N 209 JP3 H8A H N N 210 JP3 H10 H N N 211 JP3 H11 H N N 212 JP3 H12 H N N 213 LEU N N N N 214 LEU CA C N S 215 LEU C C N N 216 LEU O O N N 217 LEU CB C N N 218 LEU CG C N N 219 LEU CD1 C N N 220 LEU CD2 C N N 221 LEU OXT O N N 222 LEU H H N N 223 LEU H2 H N N 224 LEU HA H N N 225 LEU HB2 H N N 226 LEU HB3 H N N 227 LEU HG H N N 228 LEU HD11 H N N 229 LEU HD12 H N N 230 LEU HD13 H N N 231 LEU HD21 H N N 232 LEU HD22 H N N 233 LEU HD23 H N N 234 LEU HXT H N N 235 LYS N N N N 236 LYS CA C N S 237 LYS C C N N 238 LYS O O N N 239 LYS CB C N N 240 LYS CG C N N 241 LYS CD C N N 242 LYS CE C N N 243 LYS NZ N N N 244 LYS OXT O N N 245 LYS H H N N 246 LYS H2 H N N 247 LYS HA H N N 248 LYS HB2 H N N 249 LYS HB3 H N N 250 LYS HG2 H N N 251 LYS HG3 H N N 252 LYS HD2 H N N 253 LYS HD3 H N N 254 LYS HE2 H N N 255 LYS HE3 H N N 256 LYS HZ1 H N N 257 LYS HZ2 H N N 258 LYS HZ3 H N N 259 LYS HXT H N N 260 MET N N N N 261 MET CA C N S 262 MET C C N N 263 MET O O N N 264 MET CB C N N 265 MET CG C N N 266 MET SD S N N 267 MET CE C N N 268 MET OXT O N N 269 MET H H N N 270 MET H2 H N N 271 MET HA H N N 272 MET HB2 H N N 273 MET HB3 H N N 274 MET HG2 H N N 275 MET HG3 H N N 276 MET HE1 H N N 277 MET HE2 H N N 278 MET HE3 H N N 279 MET HXT H N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PRO N N N N 304 PRO CA C N S 305 PRO C C N N 306 PRO O O N N 307 PRO CB C N N 308 PRO CG C N N 309 PRO CD C N N 310 PRO OXT O N N 311 PRO H H N N 312 PRO HA H N N 313 PRO HB2 H N N 314 PRO HB3 H N N 315 PRO HG2 H N N 316 PRO HG3 H N N 317 PRO HD2 H N N 318 PRO HD3 H N N 319 PRO HXT H N N 320 SER N N N N 321 SER CA C N S 322 SER C C N N 323 SER O O N N 324 SER CB C N N 325 SER OG O N N 326 SER OXT O N N 327 SER H H N N 328 SER H2 H N N 329 SER HA H N N 330 SER HB2 H N N 331 SER HB3 H N N 332 SER HG H N N 333 SER HXT H N N 334 THR N N N N 335 THR CA C N S 336 THR C C N N 337 THR O O N N 338 THR CB C N R 339 THR OG1 O N N 340 THR CG2 C N N 341 THR OXT O N N 342 THR H H N N 343 THR H2 H N N 344 THR HA H N N 345 THR HB H N N 346 THR HG1 H N N 347 THR HG21 H N N 348 THR HG22 H N N 349 THR HG23 H N N 350 THR HXT H N N 351 TRP N N N N 352 TRP CA C N S 353 TRP C C N N 354 TRP O O N N 355 TRP CB C N N 356 TRP CG C Y N 357 TRP CD1 C Y N 358 TRP CD2 C Y N 359 TRP NE1 N Y N 360 TRP CE2 C Y N 361 TRP CE3 C Y N 362 TRP CZ2 C Y N 363 TRP CZ3 C Y N 364 TRP CH2 C Y N 365 TRP OXT O N N 366 TRP H H N N 367 TRP H2 H N N 368 TRP HA H N N 369 TRP HB2 H N N 370 TRP HB3 H N N 371 TRP HD1 H N N 372 TRP HE1 H N N 373 TRP HE3 H N N 374 TRP HZ2 H N N 375 TRP HZ3 H N N 376 TRP HH2 H N N 377 TRP HXT H N N 378 TYR N N N N 379 TYR CA C N S 380 TYR C C N N 381 TYR O O N N 382 TYR CB C N N 383 TYR CG C Y N 384 TYR CD1 C Y N 385 TYR CD2 C Y N 386 TYR CE1 C Y N 387 TYR CE2 C Y N 388 TYR CZ C Y N 389 TYR OH O N N 390 TYR OXT O N N 391 TYR H H N N 392 TYR H2 H N N 393 TYR HA H N N 394 TYR HB2 H N N 395 TYR HB3 H N N 396 TYR HD1 H N N 397 TYR HD2 H N N 398 TYR HE1 H N N 399 TYR HE2 H N N 400 TYR HH H N N 401 TYR HXT H N N 402 VAL N N N N 403 VAL CA C N S 404 VAL C C N N 405 VAL O O N N 406 VAL CB C N N 407 VAL CG1 C N N 408 VAL CG2 C N N 409 VAL OXT O N N 410 VAL H H N N 411 VAL H2 H N N 412 VAL HA H N N 413 VAL HB H N N 414 VAL HG11 H N N 415 VAL HG12 H N N 416 VAL HG13 H N N 417 VAL HG21 H N N 418 VAL HG22 H N N 419 VAL HG23 H N N 420 VAL HXT H N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 JP3 N3 C1 doub N N 173 JP3 C1 N2 sing N N 174 JP3 C1 N1 sing N N 175 JP3 N1 HN1 sing N N 176 JP3 N1 HN1A sing N N 177 JP3 C2 O1 doub N N 178 JP3 C3 C2 sing N N 179 JP3 C2 N2 sing N N 180 JP3 N2 HN2 sing N N 181 JP3 O2 C7 doub N N 182 JP3 N5 C3 doub Y N 183 JP3 C4 C3 sing Y N 184 JP3 C4 N3 sing N N 185 JP3 C9 O3 sing Y N 186 JP3 C12 O3 sing Y N 187 JP3 N4 C4 doub Y N 188 JP3 C5 N4 sing Y N 189 JP3 C7 C5 sing N N 190 JP3 C5 C6 doub Y N 191 JP3 C6 N5 sing Y N 192 JP3 C6 H6 sing N N 193 JP3 C8 N6 sing N N 194 JP3 N6 C7 sing N N 195 JP3 N6 HN6 sing N N 196 JP3 C8 C9 sing N N 197 JP3 C8 H8 sing N N 198 JP3 C8 H8A sing N N 199 JP3 C10 C9 doub Y N 200 JP3 C10 C11 sing Y N 201 JP3 C10 H10 sing N N 202 JP3 C11 C12 doub Y N 203 JP3 C11 H11 sing N N 204 JP3 C12 H12 sing N N 205 LEU N CA sing N N 206 LEU N H sing N N 207 LEU N H2 sing N N 208 LEU CA C sing N N 209 LEU CA CB sing N N 210 LEU CA HA sing N N 211 LEU C O doub N N 212 LEU C OXT sing N N 213 LEU CB CG sing N N 214 LEU CB HB2 sing N N 215 LEU CB HB3 sing N N 216 LEU CG CD1 sing N N 217 LEU CG CD2 sing N N 218 LEU CG HG sing N N 219 LEU CD1 HD11 sing N N 220 LEU CD1 HD12 sing N N 221 LEU CD1 HD13 sing N N 222 LEU CD2 HD21 sing N N 223 LEU CD2 HD22 sing N N 224 LEU CD2 HD23 sing N N 225 LEU OXT HXT sing N N 226 LYS N CA sing N N 227 LYS N H sing N N 228 LYS N H2 sing N N 229 LYS CA C sing N N 230 LYS CA CB sing N N 231 LYS CA HA sing N N 232 LYS C O doub N N 233 LYS C OXT sing N N 234 LYS CB CG sing N N 235 LYS CB HB2 sing N N 236 LYS CB HB3 sing N N 237 LYS CG CD sing N N 238 LYS CG HG2 sing N N 239 LYS CG HG3 sing N N 240 LYS CD CE sing N N 241 LYS CD HD2 sing N N 242 LYS CD HD3 sing N N 243 LYS CE NZ sing N N 244 LYS CE HE2 sing N N 245 LYS CE HE3 sing N N 246 LYS NZ HZ1 sing N N 247 LYS NZ HZ2 sing N N 248 LYS NZ HZ3 sing N N 249 LYS OXT HXT sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 PHE N CA sing N N 270 PHE N H sing N N 271 PHE N H2 sing N N 272 PHE CA C sing N N 273 PHE CA CB sing N N 274 PHE CA HA sing N N 275 PHE C O doub N N 276 PHE C OXT sing N N 277 PHE CB CG sing N N 278 PHE CB HB2 sing N N 279 PHE CB HB3 sing N N 280 PHE CG CD1 doub Y N 281 PHE CG CD2 sing Y N 282 PHE CD1 CE1 sing Y N 283 PHE CD1 HD1 sing N N 284 PHE CD2 CE2 doub Y N 285 PHE CD2 HD2 sing N N 286 PHE CE1 CZ doub Y N 287 PHE CE1 HE1 sing N N 288 PHE CE2 CZ sing Y N 289 PHE CE2 HE2 sing N N 290 PHE CZ HZ sing N N 291 PHE OXT HXT sing N N 292 PRO N CA sing N N 293 PRO N CD sing N N 294 PRO N H sing N N 295 PRO CA C sing N N 296 PRO CA CB sing N N 297 PRO CA HA sing N N 298 PRO C O doub N N 299 PRO C OXT sing N N 300 PRO CB CG sing N N 301 PRO CB HB2 sing N N 302 PRO CB HB3 sing N N 303 PRO CG CD sing N N 304 PRO CG HG2 sing N N 305 PRO CG HG3 sing N N 306 PRO CD HD2 sing N N 307 PRO CD HD3 sing N N 308 PRO OXT HXT sing N N 309 SER N CA sing N N 310 SER N H sing N N 311 SER N H2 sing N N 312 SER CA C sing N N 313 SER CA CB sing N N 314 SER CA HA sing N N 315 SER C O doub N N 316 SER C OXT sing N N 317 SER CB OG sing N N 318 SER CB HB2 sing N N 319 SER CB HB3 sing N N 320 SER OG HG sing N N 321 SER OXT HXT sing N N 322 THR N CA sing N N 323 THR N H sing N N 324 THR N H2 sing N N 325 THR CA C sing N N 326 THR CA CB sing N N 327 THR CA HA sing N N 328 THR C O doub N N 329 THR C OXT sing N N 330 THR CB OG1 sing N N 331 THR CB CG2 sing N N 332 THR CB HB sing N N 333 THR OG1 HG1 sing N N 334 THR CG2 HG21 sing N N 335 THR CG2 HG22 sing N N 336 THR CG2 HG23 sing N N 337 THR OXT HXT sing N N 338 TRP N CA sing N N 339 TRP N H sing N N 340 TRP N H2 sing N N 341 TRP CA C sing N N 342 TRP CA CB sing N N 343 TRP CA HA sing N N 344 TRP C O doub N N 345 TRP C OXT sing N N 346 TRP CB CG sing N N 347 TRP CB HB2 sing N N 348 TRP CB HB3 sing N N 349 TRP CG CD1 doub Y N 350 TRP CG CD2 sing Y N 351 TRP CD1 NE1 sing Y N 352 TRP CD1 HD1 sing N N 353 TRP CD2 CE2 doub Y N 354 TRP CD2 CE3 sing Y N 355 TRP NE1 CE2 sing Y N 356 TRP NE1 HE1 sing N N 357 TRP CE2 CZ2 sing Y N 358 TRP CE3 CZ3 doub Y N 359 TRP CE3 HE3 sing N N 360 TRP CZ2 CH2 doub Y N 361 TRP CZ2 HZ2 sing N N 362 TRP CZ3 CH2 sing Y N 363 TRP CZ3 HZ3 sing N N 364 TRP CH2 HH2 sing N N 365 TRP OXT HXT sing N N 366 TYR N CA sing N N 367 TYR N H sing N N 368 TYR N H2 sing N N 369 TYR CA C sing N N 370 TYR CA CB sing N N 371 TYR CA HA sing N N 372 TYR C O doub N N 373 TYR C OXT sing N N 374 TYR CB CG sing N N 375 TYR CB HB2 sing N N 376 TYR CB HB3 sing N N 377 TYR CG CD1 doub Y N 378 TYR CG CD2 sing Y N 379 TYR CD1 CE1 sing Y N 380 TYR CD1 HD1 sing N N 381 TYR CD2 CE2 doub Y N 382 TYR CD2 HD2 sing N N 383 TYR CE1 CZ doub Y N 384 TYR CE1 HE1 sing N N 385 TYR CE2 CZ sing Y N 386 TYR CE2 HE2 sing N N 387 TYR CZ OH sing N N 388 TYR OH HH sing N N 389 TYR OXT HXT sing N N 390 VAL N CA sing N N 391 VAL N H sing N N 392 VAL N H2 sing N N 393 VAL CA C sing N N 394 VAL CA CB sing N N 395 VAL CA HA sing N N 396 VAL C O doub N N 397 VAL C OXT sing N N 398 VAL CB CG1 sing N N 399 VAL CB CG2 sing N N 400 VAL CB HB sing N N 401 VAL CG1 HG11 sing N N 402 VAL CG1 HG12 sing N N 403 VAL CG1 HG13 sing N N 404 VAL CG2 HG21 sing N N 405 VAL CG2 HG22 sing N N 406 VAL CG2 HG23 sing N N 407 VAL OXT HXT sing N N 408 # _atom_sites.entry_id 3PX9 _atom_sites.fract_transf_matrix[1][1] 0.023560 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009769 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014853 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021887 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_