HEADER SIGNALING PROTEIN 10-DEC-10 3PXO TITLE CRYSTAL STRUCTURE OF METARHODOPSIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIVE METARHODOPSIN II WITH ALL-TRANS RETINAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS PROTEIN, RETINAL PROTEIN, PHOTORECEPTOR, ACTIVE STATE, CHROMOPHORE, KEYWDS 2 G-PROTEIN COUPLED RECEPTOR, GLYCOPROTEIN, LIPOPROTEIN, PALMITATE, KEYWDS 3 PHOSPHOPROTEIN, PHOTORECEPTOR PROTEIN, SENSORY TRANSDUCTION, KEYWDS 4 TRANSDUCER, TRANSMEMBRANE, VISION, SIGNALING PROTEIN, G-PROTEIN, KEYWDS 5 TRANSDUCIN, GALPHA SUBUNIT, MEMBRANE, RECEPTOR, GTP-BINDING, KEYWDS 6 MYRISTATE, NUCLEOTIDE-BINDING, G-PROTEIN-COUPLED RECEPTOR, KEYWDS 7 RHODOPSIN, OPSIN EXPDTA X-RAY DIFFRACTION AUTHOR H.-W.CHOE,Y.J.KIM,J.H.PARK,T.MORIZUMI,E.F.PAI,N.KRAUSS,K.P.HOFMANN, AUTHOR 2 P.SCHEERER,O.P.ERNST REVDAT 6 09-OCT-24 3PXO 1 REMARK REVDAT 5 13-SEP-23 3PXO 1 HETSYN REVDAT 4 29-JUL-20 3PXO 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 06-APR-11 3PXO 1 JRNL REVDAT 2 23-MAR-11 3PXO 1 JRNL REVDAT 1 09-MAR-11 3PXO 0 JRNL AUTH H.W.CHOE,Y.J.KIM,J.H.PARK,T.MORIZUMI,E.F.PAI,N.KRAUSS, JRNL AUTH 2 K.P.HOFMANN,P.SCHEERER,O.P.ERNST JRNL TITL CRYSTAL STRUCTURE OF METARHODOPSIN II. JRNL REF NATURE V. 471 651 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21389988 JRNL DOI 10.1038/NATURE09789 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71000 REMARK 3 B22 (A**2) : -3.71000 REMARK 3 B33 (A**2) : 5.56000 REMARK 3 B12 (A**2) : -1.85000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.009 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.320 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4545 -8.6444 38.9985 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.0332 REMARK 3 T33: 0.0201 T12: -0.0018 REMARK 3 T13: 0.0017 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.7678 L22: 0.0904 REMARK 3 L33: 0.1403 L12: 0.0298 REMARK 3 L13: -0.0461 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0682 S13: -0.0192 REMARK 3 S21: -0.0220 S22: 0.0025 S23: 0.0035 REMARK 3 S31: 0.0210 S32: 0.0172 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): -79.8194 -7.3238 37.5689 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.0180 REMARK 3 T33: 0.0237 T12: -0.0008 REMARK 3 T13: -0.0032 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.2189 L22: 1.4198 REMARK 3 L33: 6.0659 L12: -2.4413 REMARK 3 L13: 1.1994 L23: -0.8955 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.0314 S13: 0.1042 REMARK 3 S21: -0.0287 S22: 0.0286 S23: -0.0569 REMARK 3 S31: 0.0338 S32: -0.3219 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -62.9277 -29.5065 43.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.0251 REMARK 3 T33: 0.0238 T12: 0.0421 REMARK 3 T13: 0.0473 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 5.1807 L22: 0.1041 REMARK 3 L33: 2.1795 L12: 0.7344 REMARK 3 L13: 3.3601 L23: 0.4763 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.1222 S13: -0.0514 REMARK 3 S21: 0.0009 S22: 0.0233 S23: -0.0066 REMARK 3 S31: -0.0005 S32: 0.0810 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -41.0523 -9.2945 47.5285 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.0266 REMARK 3 T33: 0.1464 T12: -0.0085 REMARK 3 T13: 0.0796 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.6743 L22: 3.8618 REMARK 3 L33: 2.2519 L12: -3.7146 REMARK 3 L13: -2.5150 L23: 2.3753 REMARK 3 S TENSOR REMARK 3 S11: -0.2492 S12: 0.0682 S13: -0.4333 REMARK 3 S21: 0.2554 S22: -0.0188 S23: 0.3758 REMARK 3 S31: 0.0502 S32: -0.1127 S33: 0.2679 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): -31.6963 10.1993 58.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0487 REMARK 3 T33: 0.0112 T12: -0.0222 REMARK 3 T13: 0.0017 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 6.0753 L22: 1.0716 REMARK 3 L33: 3.2677 L12: -0.0895 REMARK 3 L13: -1.3285 L23: 1.8046 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: 0.4057 S13: 0.0873 REMARK 3 S21: -0.1720 S22: 0.1049 S23: -0.0276 REMARK 3 S31: -0.2786 S32: 0.0945 S33: -0.0634 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 801 A 801 REMARK 3 ORIGIN FOR THE GROUP (A): -44.9266 -12.7341 35.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0486 REMARK 3 T33: 0.0336 T12: 0.0200 REMARK 3 T13: 0.0021 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.7813 L22: 0.2758 REMARK 3 L33: 1.7979 L12: -1.1463 REMARK 3 L13: -2.9103 L23: 0.6996 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: -0.0816 S13: -0.1023 REMARK 3 S21: 0.0339 S22: 0.0306 S23: 0.0254 REMARK 3 S31: 0.0834 S32: 0.0539 S33: 0.0944 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): -47.6234 -8.0579 39.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0075 REMARK 3 T33: 0.0209 T12: -0.0054 REMARK 3 T13: 0.0088 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 6.1444 L22: 0.1052 REMARK 3 L33: 0.7651 L12: -0.5084 REMARK 3 L13: -2.0146 L23: 0.0861 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0625 S13: 0.0476 REMARK 3 S21: 0.0014 S22: -0.0063 S23: 0.0276 REMARK 3 S31: -0.0330 S32: -0.0152 S33: -0.0587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL - DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25082 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0-3.4 M AMMONIUM SULFATE, 0.1 M REMARK 280 SODIUM ACETATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 120.91000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.80742 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.26667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 120.91000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.80742 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.26667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 120.91000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.80742 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.26667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 120.91000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 69.80742 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.26667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 120.91000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 69.80742 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.26667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 120.91000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 69.80742 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.26667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 139.61484 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.53333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 139.61484 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 74.53333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 139.61484 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 74.53333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 139.61484 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.53333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 139.61484 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 74.53333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 139.61484 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 74.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.80000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 327 REMARK 465 LEU A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 ASP A 331 REMARK 465 GLU A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 THR A 335 REMARK 465 THR A 336 REMARK 465 VAL A 337 REMARK 465 SER A 338 REMARK 465 LYS A 339 REMARK 465 THR A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 ALA A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 28 37.11 -93.18 REMARK 500 TYR A 29 4.90 -68.87 REMARK 500 ALA A 32 141.78 -172.66 REMARK 500 ARG A 69 39.40 -80.76 REMARK 500 SER A 176 -170.54 48.51 REMARK 500 HIS A 195 107.36 -15.92 REMARK 500 ASN A 199 47.82 89.54 REMARK 500 PHE A 212 -54.46 -129.87 REMARK 500 GLN A 237 41.32 -140.77 REMARK 500 GLN A 238 0.27 -62.33 REMARK 500 CYS A 323 -39.23 61.34 REMARK 500 LYS A 325 -105.08 -142.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PQR RELATED DB: PDB DBREF 3PXO A 1 348 UNP P02699 OPSD_BOVIN 1 348 SEQRES 1 A 348 MET ASN GLY THR GLU GLY PRO ASN PHE TYR VAL PRO PHE SEQRES 2 A 348 SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU ALA SEQRES 3 A 348 PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER MET SEQRES 4 A 348 LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY PHE SEQRES 5 A 348 PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN HIS SEQRES 6 A 348 LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU ASN SEQRES 7 A 348 LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY PHE SEQRES 8 A 348 THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE VAL SEQRES 9 A 348 PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE ALA SEQRES 10 A 348 THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL VAL SEQRES 11 A 348 LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO MET SEQRES 12 A 348 SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET GLY SEQRES 13 A 348 VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA ALA SEQRES 14 A 348 PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU GLY SEQRES 15 A 348 MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO HIS SEQRES 16 A 348 GLU GLU THR ASN ASN GLU SER PHE VAL ILE TYR MET PHE SEQRES 17 A 348 VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE PHE SEQRES 18 A 348 CYS TYR GLY GLN LEU VAL PHE THR VAL LYS GLU ALA ALA SEQRES 19 A 348 ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA GLU SEQRES 20 A 348 LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE ALA SEQRES 21 A 348 PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA PHE SEQRES 22 A 348 TYR ILE PHE THR HIS GLN GLY SER ASP PHE GLY PRO ILE SEQRES 23 A 348 PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER ALA SEQRES 24 A 348 VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS GLN SEQRES 25 A 348 PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY LYS SEQRES 26 A 348 ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL SER SEQRES 27 A 348 LYS THR GLU THR SER GLN VAL ALA PRO ALA MODRES 3PXO ASN A 15 ASN GLYCOSYLATION SITE MODRES 3PXO ASN A 2 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG C 1 14 HET NAG C 2 14 HET BOG A 601 20 HET BOG A 602 20 HET PLM A 701 17 HET RET A 801 20 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM PLM PALMITIC ACID HETNAM RET RETINAL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 4 BOG 2(C14 H28 O6) FORMUL 6 PLM C16 H32 O2 FORMUL 7 RET C20 H28 O FORMUL 8 HOH *5(H2 O) HELIX 1 1 SER A 14 GLY A 18 5 5 HELIX 2 2 GLU A 33 HIS A 65 1 33 HELIX 3 3 LYS A 66 ARG A 69 5 4 HELIX 4 4 THR A 70 LEU A 72 5 3 HELIX 5 5 ASN A 73 GLY A 90 1 18 HELIX 6 6 GLY A 90 GLY A 101 1 12 HELIX 7 7 PHE A 105 LYS A 141 1 37 HELIX 8 8 GLY A 149 ALA A 169 1 21 HELIX 9 9 PRO A 170 GLY A 174 5 5 HELIX 10 10 ASN A 199 HIS A 211 1 13 HELIX 11 11 PHE A 212 GLN A 236 1 25 HELIX 12 12 SER A 240 HIS A 278 1 39 HELIX 13 13 ILE A 286 MET A 288 5 3 HELIX 14 14 THR A 289 THR A 297 1 9 HELIX 15 15 THR A 297 ILE A 307 1 11 HELIX 16 16 ASN A 310 CYS A 322 1 13 SHEET 1 A 2 THR A 4 GLY A 6 0 SHEET 2 A 2 PHE A 9 VAL A 11 -1 O VAL A 11 N THR A 4 SHEET 1 B 2 TYR A 178 GLU A 181 0 SHEET 2 B 2 SER A 186 ILE A 189 -1 O SER A 186 N GLU A 181 SSBOND 1 CYS A 110 CYS A 187 1555 1555 2.04 LINK ND2 ASN A 2 C1 NAG C 1 1555 1555 1.34 LINK ND2 ASN A 15 C1 NAG B 1 1555 1555 1.34 LINK NZ LYS A 296 C15 RET A 801 1555 1555 1.33 LINK SG CYS A 323 C1 PLM A 701 1555 1555 1.84 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.42 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 CRYST1 241.820 241.820 111.800 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004135 0.002388 0.000000 0.00000 SCALE2 0.000000 0.004775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008945 0.00000