HEADER TRANSFERASE/DNA 12-DEC-10 3PY8 TITLE CRYSTAL STRUCTURE OF A MUTANT OF THE LARGE FRAGMENT OF DNA POLYMERASE TITLE 2 I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH DNA AND TITLE 3 DDCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA POLYMERASE I LARGE FRAGMENT; COMPND 5 SYNONYM: TAQ POLYMERASE 1; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*AP*A*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)- COMPND 15 3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POLA, POL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASK-IBA37PLUS; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS MODIFIED KLENOW FRAGMENT, TRANSFERASE, POLYMERASE, NUCLEOSIDE KEYWDS 2 BINDING, NUCLEIC ACID BINDING, DNA BINDING, CATALYTIC ACTIVITY, DNA- KEYWDS 3 DIRECTED DNA POLYMERASE ACTIVITY, 5'-3' EXONUCLEASE ACTIVITY, KEYWDS 4 NUCLEOTIDES, MODIFIED NUCLEOTIDE, ARTIFICIAL NUCLEOTIDE, NUCLEOTIDE KEYWDS 5 PROBES, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHNUR,A.MARX,W.WELTE,K.DIEDERICHS REVDAT 3 21-FEB-24 3PY8 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3PY8 1 JRNL REVDAT 1 15-JUN-11 3PY8 0 JRNL AUTH S.OBEID,A.SCHNUR,C.GLOECKNER,N.BLATTER,W.WELTE,K.DIEDERICHS, JRNL AUTH 2 A.MARX JRNL TITL LEARNING FROM DIRECTED EVOLUTION: THERMUS AQUATICUS DNA JRNL TITL 2 POLYMERASE MUTANTS WITH TRANSLESION SYNTHESIS ACTIVITY. JRNL REF CHEMBIOCHEM V. 12 1574 2011 JRNL REFN ISSN 1439-4227 JRNL PMID 21480455 JRNL DOI 10.1002/CBIC.201000783 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_572) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7500 - 4.9460 1.00 2789 134 0.1973 0.1675 REMARK 3 2 4.9460 - 3.9267 1.00 2656 159 0.1398 0.1603 REMARK 3 3 3.9267 - 3.4306 1.00 2678 135 0.1435 0.1784 REMARK 3 4 3.4306 - 3.1171 1.00 2649 127 0.1581 0.1860 REMARK 3 5 3.1171 - 2.8937 1.00 2624 153 0.1666 0.2062 REMARK 3 6 2.8937 - 2.7231 1.00 2620 141 0.1712 0.2310 REMARK 3 7 2.7231 - 2.5868 1.00 2608 156 0.1689 0.1907 REMARK 3 8 2.5868 - 2.4742 1.00 2620 133 0.1637 0.2286 REMARK 3 9 2.4742 - 2.3789 1.00 2621 154 0.1651 0.2093 REMARK 3 10 2.3789 - 2.2969 1.00 2597 144 0.1592 0.2006 REMARK 3 11 2.2969 - 2.2250 1.00 2638 123 0.1564 0.2144 REMARK 3 12 2.2250 - 2.1614 1.00 2603 125 0.1560 0.2154 REMARK 3 13 2.1614 - 2.1045 1.00 2591 146 0.1609 0.2058 REMARK 3 14 2.1045 - 2.0532 1.00 2631 124 0.1681 0.1956 REMARK 3 15 2.0532 - 2.0065 1.00 2585 154 0.1687 0.2346 REMARK 3 16 2.0065 - 1.9638 1.00 2602 126 0.1693 0.2118 REMARK 3 17 1.9638 - 1.9245 1.00 2636 129 0.1805 0.2382 REMARK 3 18 1.9245 - 1.8882 1.00 2576 128 0.1912 0.2479 REMARK 3 19 1.8882 - 1.8545 1.00 2597 144 0.2021 0.2817 REMARK 3 20 1.8545 - 1.8231 1.00 2584 141 0.2306 0.2547 REMARK 3 21 1.8231 - 1.7937 0.99 2565 149 0.2439 0.2801 REMARK 3 22 1.7937 - 1.7661 0.99 2592 118 0.2574 0.3254 REMARK 3 23 1.7661 - 1.7400 1.00 2572 139 0.2736 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 58.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63390 REMARK 3 B22 (A**2) : 1.63390 REMARK 3 B33 (A**2) : -3.26770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5008 REMARK 3 ANGLE : 1.063 6889 REMARK 3 CHIRALITY : 0.058 754 REMARK 3 PLANARITY : 0.004 804 REMARK 3 DIHEDRAL : 15.161 1942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 294:418) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5567 -42.8917 -17.5649 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.1677 REMARK 3 T33: 0.3168 T12: -0.0487 REMARK 3 T13: 0.0604 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.6166 L22: 0.3833 REMARK 3 L33: 0.9228 L12: 0.1829 REMARK 3 L13: -0.1077 L23: -0.1422 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0455 S13: -0.2430 REMARK 3 S21: -0.1613 S22: 0.0164 S23: -0.3059 REMARK 3 S31: 0.3756 S32: 0.1028 S33: 0.1090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 419:519) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7199 -17.3161 0.5209 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.1759 REMARK 3 T33: 0.1624 T12: -0.0665 REMARK 3 T13: 0.0316 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.5737 L22: 0.5810 REMARK 3 L33: 0.5774 L12: 0.2551 REMARK 3 L13: -0.2418 L23: -0.5090 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.0665 S13: 0.0289 REMARK 3 S21: 0.1589 S22: -0.0506 S23: 0.0664 REMARK 3 S31: -0.1492 S32: -0.0088 S33: 0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 520:525) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1860 -3.1944 13.1723 REMARK 3 T TENSOR REMARK 3 T11: 0.5763 T22: 0.5166 REMARK 3 T33: 0.5946 T12: 0.0416 REMARK 3 T13: 0.1438 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.2608 L22: 1.5484 REMARK 3 L33: 1.0236 L12: -0.6048 REMARK 3 L13: -0.3480 L23: 1.0982 REMARK 3 S TENSOR REMARK 3 S11: 0.2395 S12: 0.0639 S13: 0.0662 REMARK 3 S21: -0.0020 S22: -0.2328 S23: 0.3263 REMARK 3 S31: -0.3109 S32: -0.1177 S33: 0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 526:556) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9061 -9.3033 -0.5382 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.1799 REMARK 3 T33: 0.1957 T12: -0.0317 REMARK 3 T13: 0.0146 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5736 L22: 0.7152 REMARK 3 L33: 1.0141 L12: 0.3645 REMARK 3 L13: -0.3355 L23: -0.1052 REMARK 3 S TENSOR REMARK 3 S11: 0.1124 S12: -0.0861 S13: 0.0750 REMARK 3 S21: 0.1691 S22: -0.0278 S23: -0.0739 REMARK 3 S31: -0.2689 S32: 0.0443 S33: -0.0702 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 557:629) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9900 -18.3783 -14.3733 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.2310 REMARK 3 T33: 0.1352 T12: -0.0457 REMARK 3 T13: -0.0034 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.1759 L22: 0.5077 REMARK 3 L33: 0.8462 L12: 0.1178 REMARK 3 L13: 0.1296 L23: -0.1390 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.0783 S13: 0.0282 REMARK 3 S21: -0.1162 S22: 0.1583 S23: 0.0291 REMARK 3 S31: -0.1521 S32: -0.3551 S33: -0.0031 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 630:637) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2494 -14.7402 -16.5066 REMARK 3 T TENSOR REMARK 3 T11: 0.4380 T22: 0.9878 REMARK 3 T33: 0.4770 T12: 0.4954 REMARK 3 T13: 0.0334 T23: 0.1385 REMARK 3 L TENSOR REMARK 3 L11: 0.3549 L22: 0.3147 REMARK 3 L33: 0.0167 L12: 0.1642 REMARK 3 L13: 0.0088 L23: 0.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.2256 S13: 0.1116 REMARK 3 S21: -0.0431 S22: 0.0031 S23: 0.0149 REMARK 3 S31: -0.0338 S32: 0.0735 S33: -0.0272 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 638:647) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2987 -7.4242 -5.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.5905 T22: 0.7110 REMARK 3 T33: 0.6346 T12: 0.1292 REMARK 3 T13: -0.1079 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 1.7076 L22: 1.0080 REMARK 3 L33: 0.7579 L12: -0.9293 REMARK 3 L13: -0.3411 L23: 0.2781 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0468 S13: 0.0866 REMARK 3 S21: -0.0043 S22: 0.0466 S23: -0.1363 REMARK 3 S31: 0.0473 S32: 0.1033 S33: -0.0353 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 648:653) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7368 0.0697 -9.3679 REMARK 3 T TENSOR REMARK 3 T11: 1.1299 T22: 0.7987 REMARK 3 T33: 0.8399 T12: 0.1356 REMARK 3 T13: -0.0114 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 0.1884 L22: 0.2905 REMARK 3 L33: 0.5006 L12: -0.0963 REMARK 3 L13: 0.1630 L23: -0.1914 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.0061 S13: -0.0081 REMARK 3 S21: -0.0255 S22: 0.0009 S23: -0.0132 REMARK 3 S31: 0.0268 S32: -0.0157 S33: 0.0145 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 654:662) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1285 -5.7601 -7.8867 REMARK 3 T TENSOR REMARK 3 T11: 0.5852 T22: 0.6866 REMARK 3 T33: 0.4307 T12: 0.1781 REMARK 3 T13: -0.0382 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.7083 L22: 0.0355 REMARK 3 L33: 0.0292 L12: -0.1438 REMARK 3 L13: -0.1398 L23: 0.0260 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: 0.0837 S13: -0.0110 REMARK 3 S21: -0.0693 S22: -0.0849 S23: 0.0269 REMARK 3 S31: -0.1274 S32: -0.2669 S33: -0.0092 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 663:678) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0414 -17.5453 1.5133 REMARK 3 T TENSOR REMARK 3 T11: 0.5582 T22: 0.8093 REMARK 3 T33: 0.3763 T12: 0.1784 REMARK 3 T13: -0.0092 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.8997 L22: 2.3538 REMARK 3 L33: 1.0982 L12: 0.0075 REMARK 3 L13: -0.4994 L23: -1.1122 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: -0.3399 S13: 0.0087 REMARK 3 S21: 0.2309 S22: 0.1295 S23: 0.1118 REMARK 3 S31: -0.3220 S32: -0.0800 S33: -0.0333 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 679:688) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4847 -9.8466 9.3292 REMARK 3 T TENSOR REMARK 3 T11: 1.0639 T22: 1.1275 REMARK 3 T33: 0.6233 T12: 0.3960 REMARK 3 T13: 0.3188 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 0.8964 L22: 0.5049 REMARK 3 L33: 0.8280 L12: -0.3229 REMARK 3 L13: -0.6029 L23: 0.5072 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.2138 S13: -0.0008 REMARK 3 S21: 0.0899 S22: 0.2071 S23: 0.0306 REMARK 3 S31: -0.1202 S32: 0.2045 S33: -0.1898 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 689:711) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0121 -23.2689 -1.8384 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 1.3068 REMARK 3 T33: 0.3328 T12: -0.0295 REMARK 3 T13: 0.1668 T23: 0.2662 REMARK 3 L TENSOR REMARK 3 L11: 0.2241 L22: 0.0857 REMARK 3 L33: 0.2802 L12: 0.0223 REMARK 3 L13: -0.0672 L23: -0.0566 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.1388 S13: 0.1543 REMARK 3 S21: 0.1328 S22: 0.0704 S23: 0.1662 REMARK 3 S31: -0.4061 S32: -0.5821 S33: -0.1616 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 712:718) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2393 -42.9079 -2.5478 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.5275 REMARK 3 T33: 0.4604 T12: -0.6901 REMARK 3 T13: -0.0308 T23: 0.3159 REMARK 3 L TENSOR REMARK 3 L11: 0.0821 L22: 0.0142 REMARK 3 L33: 0.2329 L12: -0.0224 REMARK 3 L13: -0.1176 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.0337 S13: -0.0560 REMARK 3 S21: -0.0350 S22: 0.0143 S23: 0.0683 REMARK 3 S31: 0.0643 S32: -0.1028 S33: -0.0055 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 719:793) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4743 -29.0772 -12.8715 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.2831 REMARK 3 T33: 0.1630 T12: -0.0963 REMARK 3 T13: -0.0069 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.5742 L22: 0.5750 REMARK 3 L33: 0.2654 L12: -0.2490 REMARK 3 L13: 0.1395 L23: 0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: 0.0243 S13: -0.0897 REMARK 3 S21: -0.1523 S22: 0.1796 S23: 0.0767 REMARK 3 S31: 0.1064 S32: -0.3618 S33: -0.2103 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 794:832) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5701 -15.4753 -25.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.3942 REMARK 3 T33: 0.1535 T12: -0.0423 REMARK 3 T13: -0.0352 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.3386 L22: 0.6961 REMARK 3 L33: 0.4164 L12: -0.2051 REMARK 3 L13: -0.0120 L23: 0.4518 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.3198 S13: 0.0758 REMARK 3 S21: -0.2783 S22: 0.0643 S23: 0.0056 REMARK 3 S31: -0.2775 S32: -0.5742 S33: 0.2123 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000062959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20MM MNCL2, 0.1M NA REMARK 280 -ACETATE, 12 % PEG 4000, PH 7.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.19000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.38000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.38000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 GOL A 834 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 868 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 293 REMARK 465 DA C 201 REMARK 465 DA C 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 832 CG CD OE1 OE2 REMARK 470 DA C 203 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 312 O HOH B 342 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 106 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 108 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA C 203 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA C 203 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 210 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DT C 212 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG C 214 O4' - C4' - C3' ANGL. DEV. = -4.4 DEGREES REMARK 500 DG C 214 C1' - O4' - C4' ANGL. DEV. = -7.6 DEGREES REMARK 500 DG C 214 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 328 142.21 -174.76 REMARK 500 ASP A 381 109.01 -165.94 REMARK 500 THR A 399 -169.67 -111.59 REMARK 500 VAL A 433 -69.46 -122.62 REMARK 500 HIS A 526 134.09 -176.91 REMARK 500 TYR A 545 -56.12 -122.68 REMARK 500 VAL A 586 -18.28 -152.02 REMARK 500 HIS A 784 -57.71 72.20 REMARK 500 TYR A 811 92.58 -165.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCT A 113 O2A REMARK 620 2 HOH A 205 O 75.9 REMARK 620 3 ASP A 610 OD2 105.1 94.4 REMARK 620 4 ASP A 785 OD1 85.1 149.0 114.2 REMARK 620 5 HOH A 870 O 155.4 96.0 98.6 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 5 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 157 O REMARK 620 2 HOH A 213 O 98.7 REMARK 620 3 GLU A 462 OE2 166.7 82.9 REMARK 620 4 GLU A 465 OE1 79.9 99.0 113.0 REMARK 620 5 HOH A 904 O 90.3 80.0 77.0 169.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 6 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 263 O REMARK 620 2 HOH A 274 O 85.2 REMARK 620 3 HOH A 278 O 68.5 151.9 REMARK 620 4 HIS A 443 NE2 86.4 93.6 94.3 REMARK 620 5 HOH A 941 O 162.5 112.4 94.3 91.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 833 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCT A 113 O1G REMARK 620 2 DCT A 113 O2A 88.9 REMARK 620 3 DCT A 113 O2B 86.9 81.0 REMARK 620 4 ASP A 610 OD1 86.2 105.6 170.3 REMARK 620 5 TYR A 611 O 93.0 169.3 88.5 85.0 REMARK 620 6 ASP A 785 OD2 178.5 92.6 93.1 93.6 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 3 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 107 N7 REMARK 620 2 HOH B 312 O 131.0 REMARK 620 3 HOH B 410 O 106.6 120.9 REMARK 620 4 HOH B 469 O 118.7 84.5 77.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 4 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 185 O REMARK 620 2 HOH C 186 O 59.8 REMARK 620 3 DG C 205 N7 102.7 95.7 REMARK 620 4 HOH C 218 O 154.3 95.0 73.1 REMARK 620 5 HOH C 240 O 65.3 119.9 118.8 139.5 REMARK 620 6 HOH C 250 O 120.3 177.7 86.5 85.1 59.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 834 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 4 DBREF 3PY8 A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 3PY8 B 101 112 PDB 3PY8 3PY8 101 112 DBREF 3PY8 C 201 216 PDB 3PY8 3PY8 201 216 SEQADV 3PY8 LYS A 614 UNP P19821 ILE 614 ENGINEERED MUTATION SEQADV 3PY8 LYS A 747 UNP P19821 MET 747 ENGINEERED MUTATION SEQRES 1 A 540 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA SEQRES 2 A 540 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP SEQRES 3 A 540 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG SEQRES 4 A 540 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP SEQRES 5 A 540 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER SEQRES 6 A 540 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY SEQRES 7 A 540 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER SEQRES 8 A 540 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY SEQRES 9 A 540 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER SEQRES 10 A 540 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY SEQRES 11 A 540 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG SEQRES 12 A 540 PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY SEQRES 13 A 540 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU SEQRES 14 A 540 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL SEQRES 15 A 540 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG SEQRES 16 A 540 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU SEQRES 17 A 540 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER SEQRES 18 A 540 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS SEQRES 19 A 540 PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR SEQRES 20 A 540 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU SEQRES 21 A 540 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN SEQRES 22 A 540 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP SEQRES 23 A 540 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY SEQRES 24 A 540 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP SEQRES 25 A 540 LEU LEU VAL ALA LEU ASP TYR SER GLN LYS GLU LEU ARG SEQRES 26 A 540 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG SEQRES 27 A 540 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SEQRES 28 A 540 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO SEQRES 29 A 540 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL SEQRES 30 A 540 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU SEQRES 31 A 540 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG SEQRES 32 A 540 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE GLU SEQRES 33 A 540 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU SEQRES 34 A 540 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU SEQRES 35 A 540 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG LYS SEQRES 36 A 540 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU SEQRES 37 A 540 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU SEQRES 38 A 540 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU SEQRES 39 A 540 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL SEQRES 40 A 540 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO SEQRES 41 A 540 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU SEQRES 42 A 540 ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC SEQRES 1 C 16 DA DA DA DG DG DG DC DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC MODRES 3PY8 DOC B 112 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC B 112 18 HET DCT A 113 27 HET GOL A 1 6 HET MN A 833 1 HET MG A 2 1 HET MN A 5 1 HET MN A 6 1 HET GOL A 834 6 HET MN B 3 1 HET MN C 4 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 DCT C9 H16 N3 O12 P3 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 MN 5(MN 2+) FORMUL 7 MG MG 2+ FORMUL 13 HOH *523(H2 O) HELIX 1 1 GLU A 337 ARG A 343 1 7 HELIX 2 2 LEU A 352 GLU A 363 1 12 HELIX 3 3 ASP A 372 ASP A 381 1 10 HELIX 4 4 THR A 386 GLY A 395 1 10 HELIX 5 5 GLU A 401 GLU A 421 1 21 HELIX 6 6 GLU A 423 VAL A 433 1 11 HELIX 7 7 VAL A 433 GLY A 448 1 16 HELIX 8 8 ASP A 452 GLY A 479 1 28 HELIX 9 9 SER A 486 ASP A 496 1 11 HELIX 10 10 SER A 515 LEU A 522 1 8 HELIX 11 11 PRO A 527 TYR A 545 1 19 HELIX 12 12 PRO A 548 ILE A 553 5 6 HELIX 13 13 THR A 588 ARG A 596 1 9 HELIX 14 14 GLN A 613 GLY A 624 1 12 HELIX 15 15 ASP A 625 PHE A 632 1 8 HELIX 16 16 ASP A 637 PHE A 647 1 11 HELIX 17 17 PRO A 650 VAL A 654 5 5 HELIX 18 18 ASP A 655 TYR A 671 1 17 HELIX 19 19 SER A 674 ALA A 683 1 10 HELIX 20 20 PRO A 685 PHE A 700 1 16 HELIX 21 21 PRO A 701 GLY A 718 1 18 HELIX 22 22 PRO A 731 ALA A 735 5 5 HELIX 23 23 VAL A 737 GLY A 776 1 40 HELIX 24 24 ARG A 795 GLY A 809 1 15 HELIX 25 25 LEU A 828 GLU A 832 5 5 SHEET 1 A 4 GLU A 295 ALA A 297 0 SHEET 2 A 4 ARG A 331 ARG A 334 1 O VAL A 332 N ALA A 297 SHEET 3 A 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 A 4 PHE A 306 LEU A 311 -1 N GLY A 308 O ALA A 325 SHEET 1 B 2 ARG A 450 LEU A 451 0 SHEET 2 B 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 C 2 ARG A 563 ASN A 565 0 SHEET 2 C 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 D 4 ARG A 778 GLN A 782 0 SHEET 2 D 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 D 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 D 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 E 2 TYR A 719 GLU A 721 0 SHEET 2 E 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DOC B 112 1555 1555 1.61 LINK MG MG A 2 O2A DCT A 113 1555 1555 2.54 LINK MG MG A 2 O HOH A 205 1555 1555 2.56 LINK MG MG A 2 OD2 ASP A 610 1555 1555 2.44 LINK MG MG A 2 OD1 ASP A 785 1555 1555 2.39 LINK MG MG A 2 O HOH A 870 1555 1555 2.39 LINK MN MN A 5 O HOH A 157 1555 1555 2.41 LINK MN MN A 5 O HOH A 213 1555 1555 2.39 LINK MN MN A 5 OE2 GLU A 462 1555 1555 2.19 LINK MN MN A 5 OE1 GLU A 465 1555 1555 2.41 LINK MN MN A 5 O HOH A 904 1555 1555 2.29 LINK MN MN A 6 O HOH A 263 1555 1555 2.56 LINK MN MN A 6 O HOH A 274 1555 1555 2.41 LINK MN MN A 6 O HOH A 278 1555 1555 2.41 LINK MN MN A 6 NE2 HIS A 443 1555 1555 2.29 LINK MN MN A 6 O HOH A 941 1555 1555 2.27 LINK O1G DCT A 113 MN MN A 833 1555 1555 2.17 LINK O2A DCT A 113 MN MN A 833 1555 1555 2.26 LINK O2B DCT A 113 MN MN A 833 1555 1555 2.29 LINK OD1 ASP A 610 MN MN A 833 1555 1555 2.15 LINK O TYR A 611 MN MN A 833 1555 1555 2.16 LINK OD2 ASP A 785 MN MN A 833 1555 1555 2.17 LINK MN MN B 3 N7 DG B 107 1555 1555 2.69 LINK MN MN B 3 O HOH B 312 1555 1555 2.12 LINK MN MN B 3 O HOH B 410 1555 1555 2.65 LINK MN MN B 3 O HOH B 469 1555 1555 2.39 LINK MN MN C 4 O HOH C 185 1555 1555 2.70 LINK MN MN C 4 O HOH C 186 1555 1555 2.60 LINK MN MN C 4 N7 DG C 205 1555 1555 2.62 LINK MN MN C 4 O HOH C 218 1555 1555 2.35 LINK MN MN C 4 O HOH C 240 1555 1555 2.56 LINK MN MN C 4 O HOH C 250 1555 1555 2.63 CISPEP 1 TRP A 299 PRO A 300 0 3.88 CISPEP 2 ASP A 578 PRO A 579 0 2.63 SITE 1 AC1 25 MG A 2 HOH A 65 HOH A 100 HOH A 205 SITE 2 AC1 25 HOH A 212 ARG A 573 ASP A 610 TYR A 611 SITE 3 AC1 25 SER A 612 GLN A 613 LYS A 614 GLU A 615 SITE 4 AC1 25 HIS A 639 ARG A 659 LYS A 663 PHE A 667 SITE 5 AC1 25 ASP A 785 MN A 833 HOH A 858 HOH A 956 SITE 6 AC1 25 HOH A 983 HOH B 29 DOC B 112 DG C 204 SITE 7 AC1 25 DG C 205 SITE 1 AC2 9 HOH A 176 HOH A 211 THR A 544 TYR A 545 SITE 2 AC2 9 PRO A 579 ASN A 580 ASN A 583 DC C 209 SITE 3 AC2 9 DC C 210 SITE 1 AC3 5 MG A 2 DCT A 113 ASP A 610 TYR A 611 SITE 2 AC3 5 ASP A 785 SITE 1 AC4 7 DCT A 113 HOH A 205 ASP A 610 ASP A 785 SITE 2 AC4 7 MN A 833 HOH A 870 DOC B 112 SITE 1 AC5 6 HOH A 157 HOH A 213 GLU A 462 GLU A 465 SITE 2 AC5 6 GLU A 602 HOH A 904 SITE 1 AC6 5 HOH A 263 HOH A 274 HOH A 278 HIS A 443 SITE 2 AC6 5 HOH A 941 SITE 1 AC7 1 GLU A 432 SITE 1 AC8 6 DG B 107 HOH B 220 HOH B 312 HOH B 342 SITE 2 AC8 6 HOH B 410 HOH B 469 SITE 1 AC9 6 HOH C 185 HOH C 186 DG C 205 HOH C 218 SITE 2 AC9 6 HOH C 240 HOH C 250 CRYST1 108.610 108.610 90.570 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009207 0.005316 0.000000 0.00000 SCALE2 0.000000 0.010632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011041 0.00000