HEADER LIGASE 13-DEC-10 3PZ0 TITLE THE CRYSTAL STRUCTURE OF AALEURS-CP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL-TRNA SYNTHETASE SUBUNIT ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 228-439; COMPND 5 SYNONYM: LEUCINE--TRNA LIGASE SUBUNIT ALPHA, LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: LEUS, AQ_351; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS EDITING DOMAIN, AALEURS_CP1, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.LIU,E.D.WANG REVDAT 3 01-NOV-23 3PZ0 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 3PZ0 1 JRNL REVDAT 1 24-AUG-11 3PZ0 0 JRNL AUTH R.J.LIU,M.TAN,D.H.DU,B.S.XU,G.ERIANI,E.D.WANG JRNL TITL PERIPHERAL INSERTION MODULATES THE EDITING ACTIVITY OF THE JRNL TITL 2 ISOLATED CP1 DOMAIN OF LEUCYL-TRNA SYNTHETASE JRNL REF BIOCHEM.J. V. 440 217 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 21819379 JRNL DOI 10.1042/BJ20111177 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 28699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.02000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6820 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9247 ; 1.053 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 5.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 315 ;37.442 ;24.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1154 ;16.477 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.947 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1000 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5208 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4192 ; 1.438 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6751 ; 2.546 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2628 ; 3.951 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2496 ; 6.220 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 228 A 439 4 REMARK 3 1 B 228 B 439 4 REMARK 3 1 C 228 C 439 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1648 ; 0.25 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1648 ; 0.33 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1648 ; 0.29 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1648 ; 0.53 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1648 ; 0.55 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1648 ; 0.50 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3PZ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 % POLYETHYLENE GLYCOL 8000 (PEG REMARK 280 8000), 0.1 M SODIUM CACODYLATE TRIHYDRATE PH 6.8 AND 0.2 M REMARK 280 CALCIUM ACETATE HYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.28250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 ALA A 227 REMARK 465 VAL A 439 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 ALA B 225 REMARK 465 GLY B 226 REMARK 465 ALA B 227 REMARK 465 VAL B 439 REMARK 465 HIS C 219 REMARK 465 HIS C 220 REMARK 465 HIS C 221 REMARK 465 HIS C 222 REMARK 465 HIS C 223 REMARK 465 HIS C 224 REMARK 465 ALA C 225 REMARK 465 GLY C 226 REMARK 465 ALA C 227 REMARK 465 VAL C 439 REMARK 465 HIS D 219 REMARK 465 HIS D 220 REMARK 465 HIS D 221 REMARK 465 HIS D 222 REMARK 465 HIS D 223 REMARK 465 HIS D 224 REMARK 465 ALA D 225 REMARK 465 GLY D 226 REMARK 465 ALA D 227 REMARK 465 VAL D 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 LYS A 438 CG CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 438 CG CD CE NZ REMARK 470 GLU C 239 CG CD OE1 OE2 REMARK 470 GLU C 254 CG CD OE1 OE2 REMARK 470 LYS C 258 CG CD CE NZ REMARK 470 LYS C 398 CG CD CE NZ REMARK 470 LYS C 438 CG CD CE NZ REMARK 470 GLU D 239 CG CD OE1 OE2 REMARK 470 GLU D 254 CG CD OE1 OE2 REMARK 470 LYS D 258 CG CD CE NZ REMARK 470 LYS D 398 CG CD CE NZ REMARK 470 LYS D 438 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 411 -133.96 57.21 REMARK 500 SER B 410 51.84 -145.40 REMARK 500 ASP B 411 -128.53 48.22 REMARK 500 LYS C 398 -6.05 -141.14 REMARK 500 ASP C 411 -134.43 47.75 REMARK 500 PRO D 241 30.37 -93.76 REMARK 500 ASN D 342 -4.53 -148.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 47 O REMARK 620 2 GLU B 325 OE1 68.4 REMARK 620 3 GLU B 329 OE1 151.3 115.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PZ5 RELATED DB: PDB REMARK 900 RELATED ID: 3PZ6 RELATED DB: PDB DBREF 3PZ0 A 228 439 UNP O66680 SYLA_AQUAE 228 439 DBREF 3PZ0 B 228 439 UNP O66680 SYLA_AQUAE 228 439 DBREF 3PZ0 C 228 439 UNP O66680 SYLA_AQUAE 228 439 DBREF 3PZ0 D 228 439 UNP O66680 SYLA_AQUAE 228 439 SEQADV 3PZ0 HIS A 219 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS A 220 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS A 221 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS A 222 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS A 223 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS A 224 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA A 225 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 GLY A 226 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA A 227 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 219 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 220 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 221 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 222 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 223 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS B 224 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA B 225 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 GLY B 226 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA B 227 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 219 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 220 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 221 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 222 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 223 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS C 224 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA C 225 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 GLY C 226 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA C 227 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 219 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 220 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 221 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 222 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 223 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 HIS D 224 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA D 225 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 GLY D 226 UNP O66680 EXPRESSION TAG SEQADV 3PZ0 ALA D 227 UNP O66680 EXPRESSION TAG SEQRES 1 A 221 HIS HIS HIS HIS HIS HIS ALA GLY ALA GLU GLY ALA LEU SEQRES 2 A 221 ILE ARG PHE TYR VAL GLU ILE GLU GLU PRO GLU LYS PHE SEQRES 3 A 221 LEU ASN CYS VAL PRO GLU GLU LEU LYS GLU THR LEU LEU SEQRES 4 A 221 LYS GLU LYS ARG ILE TYR ILE ASP VAL PHE THR THR ARG SEQRES 5 A 221 PRO ASP THR VAL PHE GLY ALA THR PHE VAL VAL LEU ALA SEQRES 6 A 221 PRO GLU HIS PRO LEU VAL PRO VAL LEU ALA CYS ILE GLY SEQRES 7 A 221 GLU ARG LEU GLY ASN ALA CYS TYR SER ASP VAL GLU ASN SEQRES 8 A 221 PHE VAL GLU LYS MET LYS LYS MET SER THR ARG GLU ARG SEQRES 9 A 221 THR MET GLU GLU ASP LYS GLU GLY VAL PHE LEU GLY VAL SEQRES 10 A 221 TYR ALA THR ASN PRO ALA ASN GLY GLU LYS ILE PRO VAL SEQRES 11 A 221 TRP SER ALA ASN TYR VAL LEU TYR GLU TYR GLY THR GLY SEQRES 12 A 221 ALA ILE MET CYS VAL PRO ALA HIS ASP GLN ARG ASP TRP SEQRES 13 A 221 GLU PHE ALA LYS LYS TYR ASP LEU PRO ILE LYS VAL VAL SEQRES 14 A 221 VAL LYS PRO GLU GLY ALA TRP ASP PHE GLU LYS GLY ALA SEQRES 15 A 221 TYR GLU GLY LYS GLY THR LEU VAL ASN SER ASP GLY PHE SEQRES 16 A 221 ASP GLY LEU ASP SER GLU THR ALA LYS ARG LYS ILE THR SEQRES 17 A 221 GLU TRP LEU GLN ASP ARG GLY LEU GLY GLU LYS LYS VAL SEQRES 1 B 221 HIS HIS HIS HIS HIS HIS ALA GLY ALA GLU GLY ALA LEU SEQRES 2 B 221 ILE ARG PHE TYR VAL GLU ILE GLU GLU PRO GLU LYS PHE SEQRES 3 B 221 LEU ASN CYS VAL PRO GLU GLU LEU LYS GLU THR LEU LEU SEQRES 4 B 221 LYS GLU LYS ARG ILE TYR ILE ASP VAL PHE THR THR ARG SEQRES 5 B 221 PRO ASP THR VAL PHE GLY ALA THR PHE VAL VAL LEU ALA SEQRES 6 B 221 PRO GLU HIS PRO LEU VAL PRO VAL LEU ALA CYS ILE GLY SEQRES 7 B 221 GLU ARG LEU GLY ASN ALA CYS TYR SER ASP VAL GLU ASN SEQRES 8 B 221 PHE VAL GLU LYS MET LYS LYS MET SER THR ARG GLU ARG SEQRES 9 B 221 THR MET GLU GLU ASP LYS GLU GLY VAL PHE LEU GLY VAL SEQRES 10 B 221 TYR ALA THR ASN PRO ALA ASN GLY GLU LYS ILE PRO VAL SEQRES 11 B 221 TRP SER ALA ASN TYR VAL LEU TYR GLU TYR GLY THR GLY SEQRES 12 B 221 ALA ILE MET CYS VAL PRO ALA HIS ASP GLN ARG ASP TRP SEQRES 13 B 221 GLU PHE ALA LYS LYS TYR ASP LEU PRO ILE LYS VAL VAL SEQRES 14 B 221 VAL LYS PRO GLU GLY ALA TRP ASP PHE GLU LYS GLY ALA SEQRES 15 B 221 TYR GLU GLY LYS GLY THR LEU VAL ASN SER ASP GLY PHE SEQRES 16 B 221 ASP GLY LEU ASP SER GLU THR ALA LYS ARG LYS ILE THR SEQRES 17 B 221 GLU TRP LEU GLN ASP ARG GLY LEU GLY GLU LYS LYS VAL SEQRES 1 C 221 HIS HIS HIS HIS HIS HIS ALA GLY ALA GLU GLY ALA LEU SEQRES 2 C 221 ILE ARG PHE TYR VAL GLU ILE GLU GLU PRO GLU LYS PHE SEQRES 3 C 221 LEU ASN CYS VAL PRO GLU GLU LEU LYS GLU THR LEU LEU SEQRES 4 C 221 LYS GLU LYS ARG ILE TYR ILE ASP VAL PHE THR THR ARG SEQRES 5 C 221 PRO ASP THR VAL PHE GLY ALA THR PHE VAL VAL LEU ALA SEQRES 6 C 221 PRO GLU HIS PRO LEU VAL PRO VAL LEU ALA CYS ILE GLY SEQRES 7 C 221 GLU ARG LEU GLY ASN ALA CYS TYR SER ASP VAL GLU ASN SEQRES 8 C 221 PHE VAL GLU LYS MET LYS LYS MET SER THR ARG GLU ARG SEQRES 9 C 221 THR MET GLU GLU ASP LYS GLU GLY VAL PHE LEU GLY VAL SEQRES 10 C 221 TYR ALA THR ASN PRO ALA ASN GLY GLU LYS ILE PRO VAL SEQRES 11 C 221 TRP SER ALA ASN TYR VAL LEU TYR GLU TYR GLY THR GLY SEQRES 12 C 221 ALA ILE MET CYS VAL PRO ALA HIS ASP GLN ARG ASP TRP SEQRES 13 C 221 GLU PHE ALA LYS LYS TYR ASP LEU PRO ILE LYS VAL VAL SEQRES 14 C 221 VAL LYS PRO GLU GLY ALA TRP ASP PHE GLU LYS GLY ALA SEQRES 15 C 221 TYR GLU GLY LYS GLY THR LEU VAL ASN SER ASP GLY PHE SEQRES 16 C 221 ASP GLY LEU ASP SER GLU THR ALA LYS ARG LYS ILE THR SEQRES 17 C 221 GLU TRP LEU GLN ASP ARG GLY LEU GLY GLU LYS LYS VAL SEQRES 1 D 221 HIS HIS HIS HIS HIS HIS ALA GLY ALA GLU GLY ALA LEU SEQRES 2 D 221 ILE ARG PHE TYR VAL GLU ILE GLU GLU PRO GLU LYS PHE SEQRES 3 D 221 LEU ASN CYS VAL PRO GLU GLU LEU LYS GLU THR LEU LEU SEQRES 4 D 221 LYS GLU LYS ARG ILE TYR ILE ASP VAL PHE THR THR ARG SEQRES 5 D 221 PRO ASP THR VAL PHE GLY ALA THR PHE VAL VAL LEU ALA SEQRES 6 D 221 PRO GLU HIS PRO LEU VAL PRO VAL LEU ALA CYS ILE GLY SEQRES 7 D 221 GLU ARG LEU GLY ASN ALA CYS TYR SER ASP VAL GLU ASN SEQRES 8 D 221 PHE VAL GLU LYS MET LYS LYS MET SER THR ARG GLU ARG SEQRES 9 D 221 THR MET GLU GLU ASP LYS GLU GLY VAL PHE LEU GLY VAL SEQRES 10 D 221 TYR ALA THR ASN PRO ALA ASN GLY GLU LYS ILE PRO VAL SEQRES 11 D 221 TRP SER ALA ASN TYR VAL LEU TYR GLU TYR GLY THR GLY SEQRES 12 D 221 ALA ILE MET CYS VAL PRO ALA HIS ASP GLN ARG ASP TRP SEQRES 13 D 221 GLU PHE ALA LYS LYS TYR ASP LEU PRO ILE LYS VAL VAL SEQRES 14 D 221 VAL LYS PRO GLU GLY ALA TRP ASP PHE GLU LYS GLY ALA SEQRES 15 D 221 TYR GLU GLY LYS GLY THR LEU VAL ASN SER ASP GLY PHE SEQRES 16 D 221 ASP GLY LEU ASP SER GLU THR ALA LYS ARG LYS ILE THR SEQRES 17 D 221 GLU TRP LEU GLN ASP ARG GLY LEU GLY GLU LYS LYS VAL HET CA B 1 1 HETNAM CA CALCIUM ION FORMUL 5 CA CA 2+ FORMUL 6 HOH *96(H2 O) HELIX 1 1 GLU A 240 VAL A 248 5 9 HELIX 2 2 PRO A 249 LYS A 260 1 12 HELIX 3 3 ARG A 270 ALA A 277 5 8 HELIX 4 4 PRO A 287 LEU A 299 1 13 HELIX 5 5 CYS A 303 MET A 317 1 15 HELIX 6 6 SER A 318 GLU A 325 1 8 HELIX 7 7 ASP A 370 ASP A 381 1 12 HELIX 8 8 SER A 410 ASP A 414 5 5 HELIX 9 9 ASP A 417 ASP A 431 1 15 HELIX 10 10 GLU B 240 VAL B 248 5 9 HELIX 11 11 PRO B 249 LYS B 260 1 12 HELIX 12 12 ARG B 270 ALA B 277 5 8 HELIX 13 13 PRO B 287 LEU B 299 1 13 HELIX 14 14 CYS B 303 LYS B 316 1 14 HELIX 15 15 SER B 318 GLU B 325 1 8 HELIX 16 16 ASP B 370 TYR B 380 1 11 HELIX 17 17 SER B 410 ASP B 414 5 5 HELIX 18 18 ASP B 417 ARG B 432 1 16 HELIX 19 19 GLU C 240 VAL C 248 5 9 HELIX 20 20 PRO C 249 LYS C 260 1 12 HELIX 21 21 ARG C 270 ALA C 277 5 8 HELIX 22 22 PRO C 287 LEU C 299 1 13 HELIX 23 23 CYS C 303 LYS C 315 1 13 HELIX 24 24 SER C 318 GLU C 325 1 8 HELIX 25 25 ASP C 370 ASP C 381 1 12 HELIX 26 26 ASP C 395 GLY C 399 5 5 HELIX 27 27 SER C 410 ASP C 414 5 5 HELIX 28 28 ASP C 417 ARG C 432 1 16 HELIX 29 29 PHE D 244 VAL D 248 5 5 HELIX 30 30 PRO D 249 LYS D 260 1 12 HELIX 31 31 ARG D 270 ALA D 277 5 8 HELIX 32 32 PRO D 287 LEU D 299 1 13 HELIX 33 33 CYS D 303 MET D 317 1 15 HELIX 34 34 SER D 318 GLU D 325 1 8 HELIX 35 35 ASP D 370 ASP D 381 1 12 HELIX 36 36 ASP D 417 ASP D 431 1 15 SHEET 1 A 6 ARG A 261 THR A 268 0 SHEET 2 A 6 ALA A 230 GLU A 237 -1 N VAL A 236 O ILE A 262 SHEET 3 A 6 GLY A 330 THR A 338 -1 O THR A 338 N TYR A 235 SHEET 4 A 6 LYS A 345 ALA A 351 -1 O ILE A 346 N ALA A 337 SHEET 5 A 6 PHE A 279 LEU A 282 1 N VAL A 280 O TRP A 349 SHEET 6 A 6 ALA A 362 CYS A 365 -1 O CYS A 365 N PHE A 279 SHEET 1 B 3 ARG A 261 THR A 268 0 SHEET 2 B 3 ALA A 230 GLU A 237 -1 N VAL A 236 O ILE A 262 SHEET 3 B 3 GLY A 435 LYS A 437 -1 O GLU A 436 N LEU A 231 SHEET 1 C 2 VAL A 388 LYS A 389 0 SHEET 2 C 2 THR A 406 LEU A 407 -1 O THR A 406 N LYS A 389 SHEET 1 D 6 ARG B 261 THR B 268 0 SHEET 2 D 6 ALA B 230 GLU B 237 -1 N PHE B 234 O ILE B 264 SHEET 3 D 6 GLY B 330 THR B 338 -1 O THR B 338 N TYR B 235 SHEET 4 D 6 LYS B 345 ALA B 351 -1 O ILE B 346 N ALA B 337 SHEET 5 D 6 PHE B 279 LEU B 282 1 N VAL B 280 O TRP B 349 SHEET 6 D 6 ALA B 362 CYS B 365 -1 O ILE B 363 N VAL B 281 SHEET 1 E 3 ARG B 261 THR B 268 0 SHEET 2 E 3 ALA B 230 GLU B 237 -1 N PHE B 234 O ILE B 264 SHEET 3 E 3 GLY B 435 LYS B 437 -1 O GLU B 436 N LEU B 231 SHEET 1 F 2 VAL B 388 LYS B 389 0 SHEET 2 F 2 THR B 406 LEU B 407 -1 O THR B 406 N LYS B 389 SHEET 1 G 3 ARG C 261 THR C 268 0 SHEET 2 G 3 ALA C 230 GLU C 237 -1 N PHE C 234 O ILE C 264 SHEET 3 G 3 GLY C 435 LYS C 437 -1 O GLU C 436 N LEU C 231 SHEET 1 H 4 GLY C 330 THR C 338 0 SHEET 2 H 4 LYS C 345 ALA C 351 -1 O ILE C 346 N ALA C 337 SHEET 3 H 4 PHE C 279 LEU C 282 1 N VAL C 280 O TRP C 349 SHEET 4 H 4 ALA C 362 CYS C 365 -1 O ILE C 363 N VAL C 281 SHEET 1 I 2 VAL C 388 LYS C 389 0 SHEET 2 I 2 THR C 406 LEU C 407 -1 O THR C 406 N LYS C 389 SHEET 1 J 3 ARG D 261 THR D 268 0 SHEET 2 J 3 ALA D 230 GLU D 237 -1 N ILE D 232 O VAL D 266 SHEET 3 J 3 GLU D 436 LYS D 437 -1 O GLU D 436 N LEU D 231 SHEET 1 K 4 GLY D 330 THR D 338 0 SHEET 2 K 4 LYS D 345 ALA D 351 -1 O ILE D 346 N ALA D 337 SHEET 3 K 4 PHE D 279 LEU D 282 1 N VAL D 280 O TRP D 349 SHEET 4 K 4 ALA D 362 CYS D 365 -1 O ILE D 363 N VAL D 281 SHEET 1 L 2 VAL D 388 LYS D 389 0 SHEET 2 L 2 THR D 406 LEU D 407 -1 O THR D 406 N LYS D 389 SSBOND 1 CYS A 247 CYS A 294 1555 1555 2.03 SSBOND 2 CYS A 303 CYS D 303 1555 1555 2.57 SSBOND 3 CYS B 247 CYS B 294 1555 1555 2.03 SSBOND 4 CYS B 303 CYS C 303 1555 1555 2.74 SSBOND 5 CYS C 247 CYS C 294 1555 1555 2.04 SSBOND 6 CYS D 247 CYS D 294 1555 1555 2.04 LINK CA CA B 1 O HOH B 47 1555 1555 2.49 LINK CA CA B 1 OE1 GLU B 325 1555 1555 2.73 LINK CA CA B 1 OE1 GLU B 329 1555 1555 2.68 SITE 1 AC1 4 HOH B 47 GLU B 325 GLU B 329 GLU C 325 CRYST1 38.958 94.565 118.309 90.00 90.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025669 0.000000 0.000150 0.00000 SCALE2 0.000000 0.010575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008453 0.00000