HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 14-DEC-10 3PZR TITLE CRYSTALS STRUCTURE OF ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE FROM TITLE 2 VIBRIO CHOLERAE WITH NADP AND PRODUCT OF S-CARBAMOYL-L-CYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VC_2036; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NADP, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.G.PAVLOVSKY,N.POTENTE,R.E.VIOLA REVDAT 1 04-JAN-12 3PZR 0 JRNL AUTH A.G.PAVLOVSKY,X.LIU,C.R.FAEHNLE,N.POTENTE,R.E.VIOLA JRNL TITL STRUCTURAL CHARACTERIZATION OF INHIBITORS WITH SELECTIVITY JRNL TITL 2 AGAINST MEMBERS OF A HOMOLOGOUS ENZYME FAMILY. JRNL REF CHEM.BIOL.DRUG DES. V. 79 128 2012 JRNL REFN ISSN 1747-0277 JRNL PMID 22039970 JRNL DOI 10.1111/J.1747-0285.2011.01267.X REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 68220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 733 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5923 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8046 ; 1.025 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 748 ; 5.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;35.850 ;24.440 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1029 ;11.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4382 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3679 ; 0.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5923 ; 0.548 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 0.901 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2118 ; 1.536 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 371 REMARK 3 RESIDUE RANGE : A 372 A 373 REMARK 3 RESIDUE RANGE : A 374 A 1003 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7010 39.2850 30.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0129 REMARK 3 T33: 0.0244 T12: 0.0023 REMARK 3 T13: -0.0131 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4076 L22: 0.3932 REMARK 3 L33: 0.0935 L12: -0.3277 REMARK 3 L13: 0.0566 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0238 S13: -0.0145 REMARK 3 S21: -0.0348 S22: 0.0056 S23: 0.0452 REMARK 3 S31: 0.0049 S32: -0.0117 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 370 REMARK 3 RESIDUE RANGE : B 371 B 373 REMARK 3 RESIDUE RANGE : B 374 B 999 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6290 62.0630 1.5000 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0087 REMARK 3 T33: 0.0438 T12: 0.0044 REMARK 3 T13: -0.0008 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.5086 L22: 0.5609 REMARK 3 L33: 0.0744 L12: -0.4560 REMARK 3 L13: -0.0511 L23: 0.0382 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.0282 S13: 0.0994 REMARK 3 S21: -0.0372 S22: 0.0032 S23: -0.0753 REMARK 3 S31: 0.0040 S32: -0.0026 S33: -0.0013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1 M TRIS-HCL, 0.2 M NA REMARK 280 -ACETATE, 10 MM DTT, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.50950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.50950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.50950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.50950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.50950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.50950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.50950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.50950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.17800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 110 74.91 -150.04 REMARK 500 PRO A 227 45.06 -84.43 REMARK 500 ASP A 230 -179.74 73.62 REMARK 500 ARG A 272 17.79 -144.94 REMARK 500 LEU A 316 55.15 -97.38 REMARK 500 LEU A 352 -89.76 -91.65 REMARK 500 ALA A 355 -78.15 -152.43 REMARK 500 LEU B 110 77.06 -151.24 REMARK 500 PRO B 227 45.44 -82.88 REMARK 500 ASP B 230 -178.73 76.87 REMARK 500 ARG B 272 17.42 -146.63 REMARK 500 LEU B 316 56.09 -99.45 REMARK 500 LEU B 352 -89.61 -90.57 REMARK 500 ALA B 355 -75.30 -148.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 926 DISTANCE = 5.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 373 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 454 O REMARK 620 2 HOH B 445 O 88.6 REMARK 620 3 HOH B 458 O 88.3 95.8 REMARK 620 4 HOH B 438 O 85.6 166.6 96.1 REMARK 620 5 GLY B 210 O 178.1 90.8 90.0 95.4 REMARK 620 6 PHE B 212 O 89.6 90.6 173.1 77.3 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 373 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 212 O REMARK 620 2 HOH A 437 O 94.8 REMARK 620 3 HOH A 441 O 81.7 176.5 REMARK 620 4 THR A 214 OG1 95.4 96.5 83.6 REMARK 620 5 GLY A 210 O 84.8 81.7 98.2 178.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS B 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 373 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MB4 RELATED DB: PDB REMARK 900 RELATED ID: 3PWK RELATED DB: PDB REMARK 900 RELATED ID: 3PWS RELATED DB: PDB REMARK 900 RELATED ID: 3PYL RELATED DB: PDB REMARK 900 RELATED ID: 3PYX RELATED DB: PDB REMARK 900 RELATED ID: 3PZB RELATED DB: PDB REMARK 900 RELATED ID: 3Q0E RELATED DB: PDB REMARK 900 RELATED ID: 3Q11 RELATED DB: PDB REMARK 900 RELATED ID: 3Q1L RELATED DB: PDB DBREF 3PZR A 1 370 UNP Q9KQG2 Q9KQG2_VIBCH 1 370 DBREF 3PZR B 1 370 UNP Q9KQG2 Q9KQG2_VIBCH 1 370 SEQRES 1 A 370 MET ARG VAL GLY LEU VAL GLY TRP ARG GLY MET VAL GLY SEQRES 2 A 370 SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP PHE SEQRES 3 A 370 ASP LEU ILE GLU PRO VAL PHE PHE SER THR SER GLN ILE SEQRES 4 A 370 GLY VAL PRO ALA PRO ASN PHE GLY LYS ASP ALA GLY MET SEQRES 5 A 370 LEU HIS ASP ALA PHE ASP ILE GLU SER LEU LYS GLN LEU SEQRES 6 A 370 ASP ALA VAL ILE THR CYS GLN GLY GLY SER TYR THR GLU SEQRES 7 A 370 LYS VAL TYR PRO ALA LEU ARG GLN ALA GLY TRP LYS GLY SEQRES 8 A 370 TYR TRP ILE ASP ALA ALA SER THR LEU ARG MET ASP LYS SEQRES 9 A 370 GLU ALA ILE ILE THR LEU ASP PRO VAL ASN LEU LYS GLN SEQRES 10 A 370 ILE LEU HIS GLY ILE HIS HIS GLY THR LYS THR PHE VAL SEQRES 11 A 370 GLY GLY ASN CYS THR VAL SER LEU MET LEU MET ALA LEU SEQRES 12 A 370 GLY GLY LEU TYR GLU ARG GLY LEU VAL GLU TRP MET SER SEQRES 13 A 370 ALA MET THR TYR GLN ALA ALA SER GLY ALA GLY ALA GLN SEQRES 14 A 370 ASN MET ARG GLU LEU ILE SER GLN MET GLY VAL ILE ASN SEQRES 15 A 370 ASP ALA VAL SER SER GLU LEU ALA ASN PRO ALA SER SER SEQRES 16 A 370 ILE LEU ASP ILE ASP LYS LYS VAL ALA GLU THR MET ARG SEQRES 17 A 370 SER GLY SER PHE PRO THR ASP ASN PHE GLY VAL PRO LEU SEQRES 18 A 370 ALA GLY SER LEU ILE PRO TRP ILE ASP VAL LYS ARG ASP SEQRES 19 A 370 ASN GLY GLN SER LYS GLU GLU TRP LYS ALA GLY VAL GLU SEQRES 20 A 370 ALA ASN LYS ILE LEU GLY LEU GLN ASP SER PRO VAL PRO SEQRES 21 A 370 ILE ASP GLY THR CYS VAL ARG ILE GLY ALA MET ARG CYS SEQRES 22 A 370 HIS SER GLN ALA LEU THR ILE LYS LEU LYS GLN ASN ILE SEQRES 23 A 370 PRO LEU ASP GLU ILE GLU GLU MET ILE ALA THR HIS ASN SEQRES 24 A 370 ASP TRP VAL LYS VAL ILE PRO ASN GLU ARG ASP ILE THR SEQRES 25 A 370 ALA ARG GLU LEU THR PRO ALA LYS VAL THR GLY THR LEU SEQRES 26 A 370 SER VAL PRO VAL GLY ARG LEU ARG LYS MET ALA MET GLY SEQRES 27 A 370 ASP ASP PHE LEU ASN ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 A 370 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG THR LEU ARG SEQRES 29 A 370 ILE ILE LEU ALA GLU LYS SEQRES 1 B 370 MET ARG VAL GLY LEU VAL GLY TRP ARG GLY MET VAL GLY SEQRES 2 B 370 SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP PHE SEQRES 3 B 370 ASP LEU ILE GLU PRO VAL PHE PHE SER THR SER GLN ILE SEQRES 4 B 370 GLY VAL PRO ALA PRO ASN PHE GLY LYS ASP ALA GLY MET SEQRES 5 B 370 LEU HIS ASP ALA PHE ASP ILE GLU SER LEU LYS GLN LEU SEQRES 6 B 370 ASP ALA VAL ILE THR CYS GLN GLY GLY SER TYR THR GLU SEQRES 7 B 370 LYS VAL TYR PRO ALA LEU ARG GLN ALA GLY TRP LYS GLY SEQRES 8 B 370 TYR TRP ILE ASP ALA ALA SER THR LEU ARG MET ASP LYS SEQRES 9 B 370 GLU ALA ILE ILE THR LEU ASP PRO VAL ASN LEU LYS GLN SEQRES 10 B 370 ILE LEU HIS GLY ILE HIS HIS GLY THR LYS THR PHE VAL SEQRES 11 B 370 GLY GLY ASN CYS THR VAL SER LEU MET LEU MET ALA LEU SEQRES 12 B 370 GLY GLY LEU TYR GLU ARG GLY LEU VAL GLU TRP MET SER SEQRES 13 B 370 ALA MET THR TYR GLN ALA ALA SER GLY ALA GLY ALA GLN SEQRES 14 B 370 ASN MET ARG GLU LEU ILE SER GLN MET GLY VAL ILE ASN SEQRES 15 B 370 ASP ALA VAL SER SER GLU LEU ALA ASN PRO ALA SER SER SEQRES 16 B 370 ILE LEU ASP ILE ASP LYS LYS VAL ALA GLU THR MET ARG SEQRES 17 B 370 SER GLY SER PHE PRO THR ASP ASN PHE GLY VAL PRO LEU SEQRES 18 B 370 ALA GLY SER LEU ILE PRO TRP ILE ASP VAL LYS ARG ASP SEQRES 19 B 370 ASN GLY GLN SER LYS GLU GLU TRP LYS ALA GLY VAL GLU SEQRES 20 B 370 ALA ASN LYS ILE LEU GLY LEU GLN ASP SER PRO VAL PRO SEQRES 21 B 370 ILE ASP GLY THR CYS VAL ARG ILE GLY ALA MET ARG CYS SEQRES 22 B 370 HIS SER GLN ALA LEU THR ILE LYS LEU LYS GLN ASN ILE SEQRES 23 B 370 PRO LEU ASP GLU ILE GLU GLU MET ILE ALA THR HIS ASN SEQRES 24 B 370 ASP TRP VAL LYS VAL ILE PRO ASN GLU ARG ASP ILE THR SEQRES 25 B 370 ALA ARG GLU LEU THR PRO ALA LYS VAL THR GLY THR LEU SEQRES 26 B 370 SER VAL PRO VAL GLY ARG LEU ARG LYS MET ALA MET GLY SEQRES 27 B 370 ASP ASP PHE LEU ASN ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 B 370 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG THR LEU ARG SEQRES 29 B 370 ILE ILE LEU ALA GLU LYS HET CYS A 371 7 HET CYS B 371 7 HET NAP A 372 48 HET NA A 373 1 HET NAP B 372 48 HET NA B 373 1 HETNAM CYS CYSTEINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 CYS 2(C3 H7 N O2 S) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 6 NA 2(NA 1+) FORMUL 9 HOH *733(H2 O) HELIX 1 1 GLY A 10 GLU A 23 1 14 HELIX 2 2 ARG A 24 ILE A 29 5 6 HELIX 3 3 ASP A 58 LYS A 63 1 6 HELIX 4 4 GLY A 73 ALA A 87 1 15 HELIX 5 5 LEU A 110 HIS A 124 1 15 HELIX 6 6 ASN A 133 ARG A 149 1 17 HELIX 7 7 ALA A 162 ALA A 166 5 5 HELIX 8 8 GLY A 167 ASN A 191 1 25 HELIX 9 9 SER A 195 SER A 209 1 15 HELIX 10 10 SER A 238 LEU A 252 1 15 HELIX 11 11 PRO A 287 THR A 297 1 11 HELIX 12 12 GLU A 308 LEU A 316 1 9 HELIX 13 13 THR A 317 THR A 322 1 6 HELIX 14 14 ALA A 355 LYS A 370 1 16 HELIX 15 15 GLY B 10 GLU B 23 1 14 HELIX 16 16 ARG B 24 ILE B 29 5 6 HELIX 17 17 ASP B 58 LYS B 63 1 6 HELIX 18 18 GLY B 73 ALA B 87 1 15 HELIX 19 19 LEU B 110 GLY B 125 1 16 HELIX 20 20 ASN B 133 ARG B 149 1 17 HELIX 21 21 ALA B 162 ALA B 166 5 5 HELIX 22 22 GLY B 167 ASN B 191 1 25 HELIX 23 23 SER B 195 SER B 209 1 15 HELIX 24 24 SER B 238 LEU B 252 1 15 HELIX 25 25 PRO B 287 THR B 297 1 11 HELIX 26 26 GLU B 308 LEU B 316 1 9 HELIX 27 27 THR B 317 THR B 322 1 6 HELIX 28 28 ALA B 355 LYS B 370 1 16 SHEET 1 A 7 HIS A 54 ASP A 55 0 SHEET 2 A 7 GLU A 30 SER A 35 1 N PHE A 33 O HIS A 54 SHEET 3 A 7 ARG A 2 VAL A 6 1 N LEU A 5 O VAL A 32 SHEET 4 A 7 ALA A 67 THR A 70 1 O ILE A 69 N GLY A 4 SHEET 5 A 7 TYR A 92 ASP A 95 1 O ILE A 94 N VAL A 68 SHEET 6 A 7 THR A 128 GLY A 131 1 O GLY A 131 N ASP A 95 SHEET 7 A 7 ALA A 106 THR A 109 1 N ILE A 107 O VAL A 130 SHEET 1 B 6 ILE A 261 ASP A 262 0 SHEET 2 B 6 VAL A 152 TYR A 160 1 N ALA A 157 O ASP A 262 SHEET 3 B 6 CYS A 273 LEU A 282 -1 O SER A 275 N TYR A 160 SHEET 4 B 6 GLY A 338 ASP A 349 -1 O ASP A 340 N LEU A 282 SHEET 5 B 6 VAL A 327 MET A 335 -1 N GLY A 330 O PHE A 345 SHEET 6 B 6 VAL A 302 VAL A 304 1 N LYS A 303 O VAL A 329 SHEET 1 C 2 LEU A 225 ILE A 226 0 SHEET 2 C 2 ARG A 267 ILE A 268 -1 O ARG A 267 N ILE A 226 SHEET 1 D 7 HIS B 54 ASP B 55 0 SHEET 2 D 7 GLU B 30 SER B 35 1 N PHE B 33 O HIS B 54 SHEET 3 D 7 ARG B 2 VAL B 6 1 N LEU B 5 O VAL B 32 SHEET 4 D 7 ALA B 67 THR B 70 1 O ALA B 67 N GLY B 4 SHEET 5 D 7 TYR B 92 ASP B 95 1 O ILE B 94 N VAL B 68 SHEET 6 D 7 THR B 128 GLY B 131 1 O PHE B 129 N TRP B 93 SHEET 7 D 7 ALA B 106 THR B 109 1 N ILE B 107 O VAL B 130 SHEET 1 E 6 ILE B 261 ASP B 262 0 SHEET 2 E 6 VAL B 152 TYR B 160 1 N ALA B 157 O ASP B 262 SHEET 3 E 6 CYS B 273 LEU B 282 -1 O SER B 275 N TYR B 160 SHEET 4 E 6 GLY B 338 ASP B 349 -1 O ASP B 340 N LEU B 282 SHEET 5 E 6 VAL B 327 MET B 335 -1 N GLY B 330 O PHE B 345 SHEET 6 E 6 VAL B 302 VAL B 304 1 N LYS B 303 O VAL B 329 SSBOND 1 CYS A 134 CYS A 371 1555 1555 2.00 SSBOND 2 CYS B 134 CYS B 371 1555 1555 2.00 LINK NA NA B 373 O HOH B 454 1555 1555 2.27 LINK O PHE A 212 NA NA A 373 1555 1555 2.33 LINK NA NA A 373 O HOH A 437 1555 1555 2.34 LINK NA NA B 373 O HOH B 445 1555 1555 2.37 LINK NA NA A 373 O HOH A 441 1555 1555 2.40 LINK NA NA B 373 O HOH B 458 1555 1555 2.43 LINK NA NA B 373 O HOH B 438 1555 1555 2.46 LINK OG1 THR A 214 NA NA A 373 1555 1555 2.49 LINK O GLY B 210 NA NA B 373 1555 1555 2.52 LINK O PHE B 212 NA NA B 373 1555 1555 2.58 LINK O GLY A 210 NA NA A 373 1555 1555 2.88 SITE 1 AC1 10 ASN A 133 CYS A 134 GLN A 161 GLY A 165 SITE 2 AC1 10 ILE A 229 GLU A 240 ARG A 267 HIS A 274 SITE 3 AC1 10 GLN A 350 HOH A 623 SITE 1 AC2 9 CYS B 134 GLN B 161 GLY B 165 GLU B 240 SITE 2 AC2 9 ARG B 267 HIS B 274 GLN B 350 NAP B 372 SITE 3 AC2 9 HOH B 639 SITE 1 AC3 18 GLY A 7 ARG A 9 GLY A 10 MET A 11 SITE 2 AC3 18 VAL A 12 SER A 35 THR A 36 SER A 37 SITE 3 AC3 18 CYS A 71 GLN A 72 HOH A 387 HOH A 394 SITE 4 AC3 18 HOH A 410 HOH A 423 HOH A 446 HOH A 500 SITE 5 AC3 18 HOH A 551 HOH A 610 SITE 1 AC4 6 GLY A 210 PHE A 212 THR A 214 HOH A 437 SITE 2 AC4 6 HOH A 441 HOH B 375 SITE 1 AC5 24 GLY B 7 ARG B 9 GLY B 10 MET B 11 SITE 2 AC5 24 VAL B 12 THR B 36 SER B 37 CYS B 71 SITE 3 AC5 24 GLN B 72 GLY B 73 ALA B 97 GLY B 165 SITE 4 AC5 24 GLN B 350 CYS B 371 HOH B 378 HOH B 381 SITE 5 AC5 24 HOH B 539 HOH B 550 HOH B 552 HOH B 603 SITE 6 AC5 24 HOH B 639 HOH B 646 HOH B 654 HOH B 713 SITE 1 AC6 6 GLY B 210 PHE B 212 HOH B 438 HOH B 445 SITE 2 AC6 6 HOH B 454 HOH B 458 CRYST1 155.019 155.019 69.178 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014455 0.00000