HEADER RNA BINDING PROTEIN/RNA 15-DEC-10 3Q0Q TITLE CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO2 TITLE 2 IN COMPLEX WITH P38ALPHA NREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 706-1056; COMPND 5 SYNONYM: PUMILIO-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(UP*GP*UP*AP*AP*AP*UP*A)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PUM2, KIAA0235, PUMH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST527; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS RNA SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,T.M.T.HALL REVDAT 2 19-JUN-13 3Q0Q 1 JRNL VERSN REVDAT 1 16-MAR-11 3Q0Q 0 JRNL AUTH G.LU,T.M.HALL JRNL TITL ALTERNATE MODES OF COGNATE RNA RECOGNITION BY HUMAN PUMILIO JRNL TITL 2 PROTEINS. JRNL REF STRUCTURE V. 19 361 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21397187 JRNL DOI 10.1016/J.STR.2010.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_6) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 21704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0624 - 3.9865 0.97 2693 148 0.1776 0.2085 REMARK 3 2 3.9865 - 3.1665 0.96 2660 147 0.1721 0.2313 REMARK 3 3 3.1665 - 2.7669 0.96 2643 147 0.1909 0.2821 REMARK 3 4 2.7669 - 2.5142 0.96 2631 148 0.1896 0.2696 REMARK 3 5 2.5142 - 2.3342 0.94 2650 118 0.1955 0.2801 REMARK 3 6 2.3342 - 2.1966 0.94 2599 133 0.1991 0.2810 REMARK 3 7 2.1966 - 2.0867 0.93 2564 147 0.1986 0.2936 REMARK 3 8 2.0867 - 2.0000 0.78 2159 117 0.2208 0.3635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 62.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.09220 REMARK 3 B22 (A**2) : -2.93500 REMARK 3 B33 (A**2) : 8.02720 REMARK 3 B12 (A**2) : -4.63270 REMARK 3 B13 (A**2) : -7.85150 REMARK 3 B23 (A**2) : 6.92050 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3025 REMARK 3 ANGLE : 1.077 4113 REMARK 3 CHIRALITY : 0.072 463 REMARK 3 PLANARITY : 0.004 505 REMARK 3 DIHEDRAL : 21.065 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 706:729) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1543 -22.1925 -26.0019 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.4984 REMARK 3 T33: 0.3403 T12: -0.0410 REMARK 3 T13: -0.0754 T23: 0.1386 REMARK 3 L TENSOR REMARK 3 L11: 0.1747 L22: 0.5597 REMARK 3 L33: 1.4522 L12: 0.2132 REMARK 3 L13: -0.4159 L23: -0.4600 REMARK 3 S TENSOR REMARK 3 S11: -0.3217 S12: 0.7336 S13: 0.1366 REMARK 3 S21: -0.3624 S22: 0.5923 S23: 0.5338 REMARK 3 S31: 0.3047 S32: -1.0039 S33: -0.1993 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 730:766) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2987 -22.5871 -17.6632 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1669 REMARK 3 T33: 0.0728 T12: 0.0428 REMARK 3 T13: 0.0361 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.2533 L22: 1.2005 REMARK 3 L33: 0.4290 L12: -0.0025 REMARK 3 L13: 0.3034 L23: -0.3324 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.1313 S13: -0.1245 REMARK 3 S21: -0.2468 S22: 0.0506 S23: 0.2459 REMARK 3 S31: 0.1960 S32: -0.0662 S33: 0.0189 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 767:802) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2797 -18.1138 -13.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1856 REMARK 3 T33: 0.1502 T12: -0.0070 REMARK 3 T13: 0.0167 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6181 L22: 0.9592 REMARK 3 L33: 0.6808 L12: -0.2671 REMARK 3 L13: 0.5478 L23: -0.1348 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: 0.1655 S13: -0.0252 REMARK 3 S21: 0.1118 S22: 0.0098 S23: -0.2469 REMARK 3 S31: 0.0755 S32: 0.1287 S33: 0.1357 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 803:840) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4708 -11.8770 -9.1472 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1631 REMARK 3 T33: 0.2177 T12: -0.0172 REMARK 3 T13: 0.0036 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.5386 L22: 0.6929 REMARK 3 L33: 0.3545 L12: -0.1515 REMARK 3 L13: 0.1321 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: 0.0120 S13: -0.1582 REMARK 3 S21: -0.1296 S22: 0.0389 S23: -0.1815 REMARK 3 S31: 0.1751 S32: 0.2308 S33: 0.0495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 841:876) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4756 -3.0683 -3.4318 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.0883 REMARK 3 T33: 0.2094 T12: -0.0084 REMARK 3 T13: -0.0228 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.3565 L22: 0.1626 REMARK 3 L33: 0.1658 L12: 0.1421 REMARK 3 L13: 0.2381 L23: 0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0708 S12: -0.0864 S13: -0.1968 REMARK 3 S21: -0.0986 S22: 0.0617 S23: -0.1348 REMARK 3 S31: 0.1082 S32: 0.0969 S33: -0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain A and resid 877:912) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1393 4.4060 4.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.1849 REMARK 3 T33: 0.1734 T12: -0.0167 REMARK 3 T13: -0.0165 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.3181 L22: 0.9962 REMARK 3 L33: 0.1715 L12: 0.1536 REMARK 3 L13: 0.1368 L23: 0.1857 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: -0.2668 S13: -0.1245 REMARK 3 S21: 0.1121 S22: 0.0287 S23: 0.0339 REMARK 3 S31: 0.0840 S32: 0.0579 S33: 0.0640 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain A and resid 913:948) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2974 12.2500 11.8492 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2639 REMARK 3 T33: 0.2319 T12: 0.0317 REMARK 3 T13: -0.0231 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.5077 L22: 1.2921 REMARK 3 L33: 0.3725 L12: -0.3393 REMARK 3 L13: -0.2668 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.2449 S13: -0.0930 REMARK 3 S21: -0.1605 S22: 0.1047 S23: -0.1156 REMARK 3 S31: 0.1693 S32: 0.1525 S33: 0.0049 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain A and resid 949:984) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5094 18.9539 19.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.3337 REMARK 3 T33: 0.2122 T12: 0.0329 REMARK 3 T13: 0.0191 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 0.3084 L22: 0.2288 REMARK 3 L33: 0.1434 L12: -0.2486 REMARK 3 L13: -0.0348 L23: -0.0818 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: -0.2902 S13: -0.1652 REMARK 3 S21: 0.0895 S22: 0.0693 S23: -0.0034 REMARK 3 S31: 0.0852 S32: 0.0830 S33: 0.0402 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain A and resid 985:1027) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6877 25.3576 23.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.3679 REMARK 3 T33: 0.1166 T12: -0.0022 REMARK 3 T13: -0.0475 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 1.8769 L22: 0.4847 REMARK 3 L33: 0.6948 L12: -0.4453 REMARK 3 L13: -0.3788 L23: -0.1246 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.8210 S13: -0.6019 REMARK 3 S21: 0.3357 S22: -0.0588 S23: -0.0779 REMARK 3 S31: 0.1491 S32: 0.1158 S33: 0.0731 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain A and resid 1028:1049) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1091 25.6304 21.3719 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.4267 REMARK 3 T33: 0.3841 T12: -0.0116 REMARK 3 T13: -0.0050 T23: 0.1682 REMARK 3 L TENSOR REMARK 3 L11: 0.9017 L22: 2.2960 REMARK 3 L33: 0.4284 L12: -0.4597 REMARK 3 L13: -0.3764 L23: -0.1114 REMARK 3 S TENSOR REMARK 3 S11: 0.2764 S12: 0.1072 S13: -0.4497 REMARK 3 S21: -0.1105 S22: -0.6045 S23: 0.6745 REMARK 3 S31: 0.3195 S32: 0.1918 S33: 0.1742 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB063048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% (W/V) PEG 3000, 100 MM REMARK 280 NA3CITRATE PH 5.0-6.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1049 REMARK 465 LYS A 1050 REMARK 465 ASN A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 LEU A 1055 REMARK 465 GLY A 1056 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 A B 4 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 A B 8 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 989 142.96 -176.71 REMARK 500 ARG A1032 -54.33 -21.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 172 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 177 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 190 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 211 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A 229 DISTANCE = 5.05 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q0L RELATED DB: PDB REMARK 900 RELATED ID: 3Q0M RELATED DB: PDB REMARK 900 RELATED ID: 3Q0N RELATED DB: PDB REMARK 900 RELATED ID: 3Q0O RELATED DB: PDB REMARK 900 RELATED ID: 3Q0P RELATED DB: PDB REMARK 900 RELATED ID: 3Q0R RELATED DB: PDB REMARK 900 RELATED ID: 3Q0S RELATED DB: PDB DBREF 3Q0Q A 706 1056 UNP Q8TB72 PUM2_HUMAN 706 1056 DBREF 3Q0Q B 1 8 PDB 3Q0Q 3Q0Q 1 8 SEQRES 1 A 351 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 A 351 PHE PRO ASN LEU GLN LEU ARG ASP LEU ILE GLY HIS ILE SEQRES 3 A 351 VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 A 351 GLN GLN LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 A 351 MET VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 A 351 MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 A 351 PHE GLU PHE GLY SER LEU ASP GLN LYS LEU ALA LEU ALA SEQRES 8 A 351 THR ARG ILE ARG GLY HIS VAL LEU PRO LEU ALA LEU GLN SEQRES 9 A 351 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SER SEQRES 10 A 351 ILE SER SER ASP GLN GLN VAL ILE SER GLU MET VAL LYS SEQRES 11 A 351 GLU LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN SEQRES 12 A 351 ASN GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL SEQRES 13 A 351 GLN PRO GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS SEQRES 14 A 351 GLY GLN VAL PHE VAL LEU SER THR HIS PRO TYR GLY CYS SEQRES 15 A 351 ARG VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU SEQRES 16 A 351 GLN THR LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR SEQRES 17 A 351 GLU GLN LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE SEQRES 18 A 351 GLN HIS VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER SEQRES 19 A 351 LYS ILE VAL SER GLU ILE ARG GLY LYS VAL LEU ALA LEU SEQRES 20 A 351 SER GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS SEQRES 21 A 351 VAL THR HIS ALA SER ARG ALA GLU ARG ALA LEU LEU ILE SEQRES 22 A 351 ASP GLU VAL CYS CYS GLN ASN ASP GLY PRO HIS SER ALA SEQRES 23 A 351 LEU TYR THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL SEQRES 24 A 351 VAL GLN LYS MET ILE ASP MET ALA GLU PRO ALA GLN ARG SEQRES 25 A 351 LYS ILE ILE MET HIS LYS ILE ARG PRO HIS ILE THR THR SEQRES 26 A 351 LEU ARG LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS SEQRES 27 A 351 LEU GLU LYS TYR TYR LEU LYS ASN SER PRO ASP LEU GLY SEQRES 1 B 8 U G U A A A U A FORMUL 3 HOH *206(H2 O) HELIX 1 1 SER A 708 ASN A 716 1 9 HELIX 2 2 GLN A 723 ILE A 728 5 6 HELIX 3 3 HIS A 730 GLN A 736 1 7 HELIX 4 4 ASP A 737 GLU A 749 1 13 HELIX 5 5 THR A 752 ALA A 766 1 15 HELIX 6 6 ALA A 766 THR A 772 1 7 HELIX 7 7 GLY A 776 GLY A 787 1 12 HELIX 8 8 SER A 788 ARG A 800 1 13 HELIX 9 9 HIS A 802 GLN A 809 1 8 HELIX 10 10 TYR A 811 ILE A 823 1 13 HELIX 11 11 GLN A 827 GLU A 836 1 10 HELIX 12 12 HIS A 840 ASP A 847 1 8 HELIX 13 13 ASN A 849 VAL A 861 1 13 HELIX 14 14 GLN A 862 SER A 865 5 4 HELIX 15 15 LEU A 866 PHE A 873 1 8 HELIX 16 16 GLN A 876 THR A 882 1 7 HELIX 17 17 TYR A 885 CYS A 897 1 13 HELIX 18 18 THR A 898 HIS A 912 1 15 HELIX 19 19 HIS A 912 VAL A 917 1 6 HELIX 20 20 TYR A 921 GLY A 933 1 13 HELIX 21 21 ARG A 934 ARG A 946 1 13 HELIX 22 22 LYS A 948 GLN A 954 1 7 HELIX 23 23 PHE A 957 ALA A 969 1 13 HELIX 24 24 SER A 970 CYS A 983 1 14 HELIX 25 25 SER A 990 LYS A 997 1 8 HELIX 26 26 TYR A 1000 ALA A 1012 1 13 HELIX 27 27 GLU A 1013 ARG A 1025 1 13 HELIX 28 28 HIS A 1027 TYR A 1034 1 8 HELIX 29 29 THR A 1035 LYS A 1038 5 4 HELIX 30 30 HIS A 1039 LYS A 1046 1 8 SSBOND 1 CYS A 982 CYS A 983 1555 1555 2.04 CRYST1 36.438 43.030 60.845 71.61 85.73 77.99 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027444 -0.005838 -0.000266 0.00000 SCALE2 0.000000 0.023760 -0.007680 0.00000 SCALE3 0.000000 0.000000 0.017320 0.00000