HEADER RNA BINDING PROTEIN/RNA 15-DEC-10 3Q0S TITLE CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO2 TITLE 2 IN COMPLEX WITH ERK2 NRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 706-1056; COMPND 5 SYNONYM: PUMILIO-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(UP*GP*UP*AP*CP*AP*UP*C)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PUM2, KIAA0235, PUMH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST527; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS RNA SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,T.M.T.HALL REVDAT 2 19-JUN-13 3Q0S 1 JRNL VERSN REVDAT 1 16-MAR-11 3Q0S 0 JRNL AUTH G.LU,T.M.HALL JRNL TITL ALTERNATE MODES OF COGNATE RNA RECOGNITION BY HUMAN PUMILIO JRNL TITL 2 PROTEINS. JRNL REF STRUCTURE V. 19 361 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21397187 JRNL DOI 10.1016/J.STR.2010.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_6) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 26134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0271 - 4.1535 0.99 3025 174 0.1982 0.2193 REMARK 3 2 4.1535 - 3.2995 1.00 3014 146 0.1725 0.2025 REMARK 3 3 3.2995 - 2.8832 0.95 2840 144 0.2222 0.2901 REMARK 3 4 2.8832 - 2.6199 0.92 2710 151 0.2078 0.2633 REMARK 3 5 2.6199 - 2.4324 0.90 2688 129 0.2088 0.2732 REMARK 3 6 2.4324 - 2.2891 0.91 2707 134 0.1931 0.2993 REMARK 3 7 2.2891 - 2.1745 0.92 2728 136 0.1901 0.2559 REMARK 3 8 2.1745 - 2.0799 0.93 2733 143 0.2159 0.2691 REMARK 3 9 2.0799 - 1.9999 0.81 2410 122 0.2466 0.3344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 79.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45830 REMARK 3 B22 (A**2) : 17.62750 REMARK 3 B33 (A**2) : -16.16920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.35300 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3019 REMARK 3 ANGLE : 0.864 4103 REMARK 3 CHIRALITY : 0.055 463 REMARK 3 PLANARITY : 0.004 505 REMARK 3 DIHEDRAL : 18.993 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 706:729) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2165 17.8723 8.6764 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.5778 REMARK 3 T33: 0.3017 T12: 0.0708 REMARK 3 T13: -0.0071 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 0.3840 L22: 0.2945 REMARK 3 L33: 0.7781 L12: 0.3104 REMARK 3 L13: 0.0660 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.7888 S13: 0.2871 REMARK 3 S21: -0.1999 S22: -0.1777 S23: 0.0733 REMARK 3 S31: -0.3953 S32: 0.3645 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 730:766) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2417 8.1171 10.7421 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.4833 REMARK 3 T33: 0.2475 T12: 0.0527 REMARK 3 T13: -0.0198 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.0462 L22: 0.6817 REMARK 3 L33: 0.8163 L12: 0.9638 REMARK 3 L13: -0.0154 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.6935 S13: -0.0108 REMARK 3 S21: 0.0230 S22: 0.1789 S23: 0.0071 REMARK 3 S31: 0.1803 S32: 0.1922 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 767:802) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2871 -1.7886 16.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.2914 T22: 0.2567 REMARK 3 T33: 0.2332 T12: 0.1009 REMARK 3 T13: -0.0231 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.4182 L22: 1.0371 REMARK 3 L33: 1.2736 L12: 0.3964 REMARK 3 L13: -0.6349 L23: -1.2157 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: 0.4908 S13: 0.0965 REMARK 3 S21: 0.2710 S22: 0.1594 S23: 0.0230 REMARK 3 S31: 0.3757 S32: 0.1137 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 803:840) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3735 -9.1116 24.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.4108 T22: 0.2167 REMARK 3 T33: 0.2627 T12: 0.0571 REMARK 3 T13: -0.0486 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.8026 L22: 0.5872 REMARK 3 L33: 1.1751 L12: 0.6495 REMARK 3 L13: -1.0016 L23: -0.6701 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.3563 S13: 0.1002 REMARK 3 S21: -0.3598 S22: -0.0379 S23: 0.1605 REMARK 3 S31: 0.5200 S32: 0.1749 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 841:876) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8725 -12.0344 34.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.1358 REMARK 3 T33: 0.2922 T12: 0.0475 REMARK 3 T13: -0.0549 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.5066 L22: 0.2822 REMARK 3 L33: 0.9936 L12: 0.0919 REMARK 3 L13: -0.6878 L23: 0.1272 REMARK 3 S TENSOR REMARK 3 S11: 0.3044 S12: 0.2222 S13: -0.0712 REMARK 3 S21: -0.1122 S22: -0.1860 S23: 0.0188 REMARK 3 S31: 0.3381 S32: 0.0284 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain A and resid 877:912) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4316 -11.6997 43.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.3250 T22: 0.1945 REMARK 3 T33: 0.2769 T12: -0.0477 REMARK 3 T13: -0.0814 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.5474 L22: 0.1176 REMARK 3 L33: 1.0689 L12: -0.0685 REMARK 3 L13: -0.3954 L23: 0.4089 REMARK 3 S TENSOR REMARK 3 S11: 0.2979 S12: 0.0374 S13: -0.1466 REMARK 3 S21: 0.1965 S22: -0.0969 S23: 0.0844 REMARK 3 S31: 0.5944 S32: -0.3763 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain A and resid 913:948) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8414 -6.7940 52.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.3574 REMARK 3 T33: 0.2509 T12: -0.0274 REMARK 3 T13: -0.0181 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.0373 L22: 0.5553 REMARK 3 L33: 0.8940 L12: -0.0093 REMARK 3 L13: -0.1218 L23: 0.7996 REMARK 3 S TENSOR REMARK 3 S11: 0.3024 S12: -0.2775 S13: 0.0152 REMARK 3 S21: 0.0531 S22: -0.0846 S23: 0.0943 REMARK 3 S31: 0.1804 S32: -0.6606 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain A and resid 949:984) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1102 -0.3036 60.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.6823 REMARK 3 T33: 0.4038 T12: 0.0900 REMARK 3 T13: 0.0377 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.0655 L22: 1.3939 REMARK 3 L33: 0.7222 L12: -0.2378 REMARK 3 L13: 0.2512 L23: -0.2036 REMARK 3 S TENSOR REMARK 3 S11: 0.5274 S12: -0.1974 S13: 0.3794 REMARK 3 S21: 0.0918 S22: -0.1574 S23: 0.4763 REMARK 3 S31: -0.2647 S32: -1.2025 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain A and resid 985:1027) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1566 8.2693 67.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.4307 T22: 1.0601 REMARK 3 T33: 0.5242 T12: 0.3081 REMARK 3 T13: 0.1072 T23: -0.2338 REMARK 3 L TENSOR REMARK 3 L11: 0.9231 L22: 0.9723 REMARK 3 L33: 0.6180 L12: -0.2929 REMARK 3 L13: -0.0595 L23: 0.7180 REMARK 3 S TENSOR REMARK 3 S11: 0.6415 S12: -1.2648 S13: 0.0789 REMARK 3 S21: 0.4643 S22: -0.3492 S23: 0.1619 REMARK 3 S31: -1.0668 S32: -1.6788 S33: 0.0202 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain A and resid 1028:1049) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2847 18.5543 66.0835 REMARK 3 T TENSOR REMARK 3 T11: 1.2315 T22: 1.1649 REMARK 3 T33: 1.0726 T12: 0.3595 REMARK 3 T13: 0.0979 T23: -0.1961 REMARK 3 L TENSOR REMARK 3 L11: 0.3249 L22: 0.0424 REMARK 3 L33: 0.5413 L12: -0.0442 REMARK 3 L13: 0.1875 L23: -0.0337 REMARK 3 S TENSOR REMARK 3 S11: 0.7707 S12: -1.1887 S13: 0.4548 REMARK 3 S21: 0.1300 S22: 0.1386 S23: -0.2664 REMARK 3 S31: -0.8891 S32: -2.5500 S33: 0.0096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB063050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% (W/V) PEG 3000, 100 MM REMARK 280 NA3CITRATE PH 5.0-6.0 , VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.70200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.70200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1049 REMARK 465 LYS A 1050 REMARK 465 ASN A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 LEU A 1055 REMARK 465 GLY A 1056 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 985 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 707 104.56 -166.23 REMARK 500 HIS A 840 20.93 -140.67 REMARK 500 GLN A 984 -163.70 -118.45 REMARK 500 ASP A 986 48.87 -157.38 REMARK 500 LEU A1031 57.93 -105.54 REMARK 500 LYS A1038 15.57 -67.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q0L RELATED DB: PDB REMARK 900 RELATED ID: 3Q0M RELATED DB: PDB REMARK 900 RELATED ID: 3Q0N RELATED DB: PDB REMARK 900 RELATED ID: 3Q0O RELATED DB: PDB REMARK 900 RELATED ID: 3Q0P RELATED DB: PDB REMARK 900 RELATED ID: 3Q0Q RELATED DB: PDB REMARK 900 RELATED ID: 3Q0R RELATED DB: PDB DBREF 3Q0S A 706 1056 UNP Q8TB72 PUM2_HUMAN 706 1056 DBREF 3Q0S B 1 8 PDB 3Q0S 3Q0S 1 8 SEQRES 1 A 351 GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN ARG SEQRES 2 A 351 PHE PRO ASN LEU GLN LEU ARG ASP LEU ILE GLY HIS ILE SEQRES 3 A 351 VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE ILE SEQRES 4 A 351 GLN GLN LYS LEU GLU ARG ALA THR PRO ALA GLU ARG GLN SEQRES 5 A 351 MET VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN LEU SEQRES 6 A 351 MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS PHE SEQRES 7 A 351 PHE GLU PHE GLY SER LEU ASP GLN LYS LEU ALA LEU ALA SEQRES 8 A 351 THR ARG ILE ARG GLY HIS VAL LEU PRO LEU ALA LEU GLN SEQRES 9 A 351 MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SER SEQRES 10 A 351 ILE SER SER ASP GLN GLN VAL ILE SER GLU MET VAL LYS SEQRES 11 A 351 GLU LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN SEQRES 12 A 351 ASN GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL SEQRES 13 A 351 GLN PRO GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS SEQRES 14 A 351 GLY GLN VAL PHE VAL LEU SER THR HIS PRO TYR GLY CYS SEQRES 15 A 351 ARG VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU SEQRES 16 A 351 GLN THR LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR SEQRES 17 A 351 GLU GLN LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE SEQRES 18 A 351 GLN HIS VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER SEQRES 19 A 351 LYS ILE VAL SER GLU ILE ARG GLY LYS VAL LEU ALA LEU SEQRES 20 A 351 SER GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS SEQRES 21 A 351 VAL THR HIS ALA SER ARG ALA GLU ARG ALA LEU LEU ILE SEQRES 22 A 351 ASP GLU VAL CYS CYS GLN ASN ASP GLY PRO HIS SER ALA SEQRES 23 A 351 LEU TYR THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL SEQRES 24 A 351 VAL GLN LYS MET ILE ASP MET ALA GLU PRO ALA GLN ARG SEQRES 25 A 351 LYS ILE ILE MET HIS LYS ILE ARG PRO HIS ILE THR THR SEQRES 26 A 351 LEU ARG LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS SEQRES 27 A 351 LEU GLU LYS TYR TYR LEU LYS ASN SER PRO ASP LEU GLY SEQRES 1 B 8 U G U A C A U C FORMUL 3 HOH *136(H2 O) HELIX 1 1 SER A 708 ASN A 716 1 9 HELIX 2 2 GLN A 723 ILE A 728 5 6 HELIX 3 3 HIS A 730 GLN A 736 1 7 HELIX 4 4 ASP A 737 GLU A 749 1 13 HELIX 5 5 THR A 752 GLN A 765 1 14 HELIX 6 6 ALA A 766 THR A 772 1 7 HELIX 7 7 PHE A 775 GLY A 787 1 13 HELIX 8 8 SER A 788 ARG A 800 1 13 HELIX 9 9 HIS A 802 LEU A 808 1 7 HELIX 10 10 TYR A 811 ILE A 823 1 13 HELIX 11 11 GLN A 827 GLU A 836 1 10 HELIX 12 12 HIS A 840 LYS A 846 1 7 HELIX 13 13 ASN A 849 VAL A 861 1 13 HELIX 14 14 GLN A 862 SER A 865 5 4 HELIX 15 15 LEU A 866 PHE A 873 1 8 HELIX 16 16 GLN A 876 THR A 882 1 7 HELIX 17 17 TYR A 885 CYS A 897 1 13 HELIX 18 18 THR A 898 GLN A 911 1 14 HELIX 19 19 HIS A 912 GLN A 918 1 7 HELIX 20 20 TYR A 921 GLY A 933 1 13 HELIX 21 21 ARG A 934 ARG A 946 1 13 HELIX 22 22 LYS A 948 GLN A 954 1 7 HELIX 23 23 PHE A 957 ALA A 969 1 13 HELIX 24 24 SER A 970 CYS A 983 1 14 HELIX 25 25 SER A 990 ASP A 998 1 9 HELIX 26 26 TYR A 1000 ALA A 1012 1 13 HELIX 27 27 GLU A 1013 ARG A 1025 1 13 HELIX 28 28 PRO A 1026 ILE A 1028 5 3 HELIX 29 29 ALA A 1042 LYS A 1046 5 5 SSBOND 1 CYS A 982 CYS A 983 1555 1555 2.48 CRYST1 115.404 45.364 97.800 90.00 125.26 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008665 0.000000 0.006126 0.00000 SCALE2 0.000000 0.022044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012522 0.00000