HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 16-DEC-10 3Q11 TITLE CRYSTALS STRUCTURE OF ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE FROM TITLE 2 STREPTOCOCCUS PNEUMONIAE WITH NADP AND ASPARTYL BETA- TITLE 3 DIFLUOROPHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: CGSSP23BS72_03388; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28A KEYWDS NADP, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.G.PAVLOVSKY,R.E.VIOLA,C.R.FAEHNLE REVDAT 2 21-FEB-24 3Q11 1 REMARK SEQADV REVDAT 1 04-JAN-12 3Q11 0 JRNL AUTH A.G.PAVLOVSKY,X.LIU,C.R.FAEHNLE,N.POTENTE,R.E.VIOLA JRNL TITL STRUCTURAL CHARACTERIZATION OF INHIBITORS WITH SELECTIVITY JRNL TITL 2 AGAINST MEMBERS OF A HOMOLOGOUS ENZYME FAMILY. JRNL REF CHEM.BIOL.DRUG DES. V. 79 128 2012 JRNL REFN ISSN 1747-0277 JRNL PMID 22039970 JRNL DOI 10.1111/J.1747-0285.2011.01267.X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 57723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 1.54000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5723 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7793 ; 1.106 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 717 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;35.126 ;25.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 955 ;12.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4224 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3581 ; 0.288 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5791 ; 0.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2142 ; 0.947 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2001 ; 1.575 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 359 REMARK 3 RESIDUE RANGE : A 367 A 372 REMARK 3 RESIDUE RANGE : A 373 A 849 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4150 -0.4080 7.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0582 REMARK 3 T33: 0.0467 T12: -0.0092 REMARK 3 T13: -0.0249 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.3212 L22: 0.0752 REMARK 3 L33: 1.3705 L12: -0.0747 REMARK 3 L13: -0.3443 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0230 S13: -0.0173 REMARK 3 S21: -0.0121 S22: -0.0191 S23: 0.0264 REMARK 3 S31: -0.0973 S32: 0.0031 S33: 0.0518 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 358 REMARK 3 RESIDUE RANGE : B 367 B 370 REMARK 3 RESIDUE RANGE : B 371 B 851 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8260 -10.7400 -20.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.1269 REMARK 3 T33: 0.0369 T12: 0.0321 REMARK 3 T13: -0.0158 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.1637 L22: 0.1598 REMARK 3 L33: 1.6937 L12: -0.1252 REMARK 3 L13: -0.2898 L23: 0.0386 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0363 S13: -0.0308 REMARK 3 S21: -0.0449 S22: -0.0542 S23: 0.0282 REMARK 3 S31: 0.1586 S32: 0.3244 S33: 0.0532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 1.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.00000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG 3350, 0.1 M AMMONIUM ACETATE, REMARK 280 0.05 M NA-CITRATE BUFFER, 10MM DTT, PH 6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.35100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 MET B 1 REMARK 465 LEU B 359 REMARK 465 GLU B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 HIS B 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 -152.61 -150.94 REMARK 500 LYS A 48 -107.37 56.72 REMARK 500 ASN A 112 43.75 -141.01 REMARK 500 PRO A 207 44.72 -77.12 REMARK 500 ASP A 210 -172.90 63.23 REMARK 500 ASP A 216 -4.34 74.59 REMARK 500 ALA A 251 119.80 89.93 REMARK 500 ASP A 312 -40.94 -136.26 REMARK 500 LEU A 327 -90.12 -96.34 REMARK 500 ALA A 330 -83.90 -153.31 REMARK 500 ALA B 36 -156.34 -160.92 REMARK 500 LYS B 48 -109.97 57.60 REMARK 500 SER B 71 67.11 -151.48 REMARK 500 ASN B 94 54.66 -99.18 REMARK 500 PRO B 207 48.62 -79.71 REMARK 500 ASP B 210 -171.47 64.22 REMARK 500 ASP B 216 -1.52 75.70 REMARK 500 ALA B 251 123.78 90.37 REMARK 500 ASP B 284 81.09 -153.19 REMARK 500 ARG B 306 29.00 48.48 REMARK 500 ASP B 312 -48.06 -134.92 REMARK 500 LEU B 327 -94.82 -98.46 REMARK 500 ALA B 330 -80.80 -150.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4F A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4F B 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PYX RELATED DB: PDB REMARK 900 RELATED ID: 3PZB RELATED DB: PDB REMARK 900 RELATED ID: 3PZR RELATED DB: PDB REMARK 900 RELATED ID: 3Q0E RELATED DB: PDB REMARK 900 RELATED ID: 3Q1L RELATED DB: PDB DBREF 3Q11 A 1 358 UNP A5MTN0 A5MTN0_STRPN 1 358 DBREF 3Q11 B 1 358 UNP A5MTN0 A5MTN0_STRPN 1 358 SEQADV 3Q11 LEU A 359 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 GLU A 360 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 361 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 362 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 363 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 364 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 365 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS A 366 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 LEU B 359 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 GLU B 360 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 361 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 362 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 363 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 364 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 365 UNP A5MTN0 EXPRESSION TAG SEQADV 3Q11 HIS B 366 UNP A5MTN0 EXPRESSION TAG SEQRES 1 A 366 MET GLY TYR THR VAL ALA VAL VAL GLY ALA THR GLY ALA SEQRES 2 A 366 VAL GLY ALA GLN MET ILE LYS MET LEU GLU GLU SER THR SEQRES 3 A 366 LEU PRO ILE ASP LYS ILE ARG TYR LEU ALA SER ALA ARG SEQRES 4 A 366 SER ALA GLY LYS SER LEU LYS PHE LYS ASP GLN ASP ILE SEQRES 5 A 366 THR ILE GLU GLU THR THR GLU THR ALA PHE GLU GLY VAL SEQRES 6 A 366 ASP ILE ALA LEU PHE SER ALA GLY SER SER THR SER ALA SEQRES 7 A 366 LYS TYR ALA PRO TYR ALA VAL LYS ALA GLY VAL VAL VAL SEQRES 8 A 366 VAL ASP ASN THR SER TYR PHE ARG GLN ASN PRO ASP VAL SEQRES 9 A 366 PRO LEU VAL VAL PRO GLU VAL ASN ALA HIS ALA LEU ASP SEQRES 10 A 366 ALA HIS ASN GLY ILE ILE ALA CYS PRO ASN CYS SER THR SEQRES 11 A 366 ILE GLN MET MET VAL ALA LEU GLU PRO VAL ARG GLN LYS SEQRES 12 A 366 TRP GLY LEU ASP ARG ILE ILE VAL SER THR TYR GLN ALA SEQRES 13 A 366 VAL SER GLY ALA GLY MET GLY ALA ILE LEU GLU THR GLN SEQRES 14 A 366 ARG GLU LEU ARG GLU VAL LEU ASN ASP GLY VAL LYS PRO SEQRES 15 A 366 CYS ASP LEU HIS ALA GLU ILE LEU PRO SER GLY GLY ASP SEQRES 16 A 366 LYS LYS HIS TYR PRO ILE ALA PHE ASN ALA LEU PRO GLN SEQRES 17 A 366 ILE ASP VAL PHE THR ASP ASN ASP TYR THR TYR GLU GLU SEQRES 18 A 366 MET LYS MET THR LYS GLU THR LYS LYS ILE MET GLU ASP SEQRES 19 A 366 ASP SER ILE ALA VAL SER ALA THR CYS VAL ARG ILE PRO SEQRES 20 A 366 VAL LEU SER ALA HIS SER GLU SER VAL TYR ILE GLU THR SEQRES 21 A 366 LYS GLU VAL ALA PRO ILE GLU GLU VAL LYS ALA ALA ILE SEQRES 22 A 366 ALA ALA PHE PRO GLY ALA VAL LEU GLU ASP ASP VAL ALA SEQRES 23 A 366 HIS GLN ILE TYR PRO GLN ALA ILE ASN ALA VAL GLY SER SEQRES 24 A 366 ARG ASP THR PHE VAL GLY ARG ILE ARG LYS ASP LEU ASP SEQRES 25 A 366 ALA GLU LYS GLY ILE HIS MET TRP VAL VAL SER ASP ASN SEQRES 26 A 366 LEU LEU LYS GLY ALA ALA TRP ASN SER VAL GLN ILE ALA SEQRES 27 A 366 GLU THR LEU HIS GLU ARG GLY LEU VAL ARG PRO THR ALA SEQRES 28 A 366 GLU LEU LYS PHE GLU LEU LYS LEU GLU HIS HIS HIS HIS SEQRES 29 A 366 HIS HIS SEQRES 1 B 366 MET GLY TYR THR VAL ALA VAL VAL GLY ALA THR GLY ALA SEQRES 2 B 366 VAL GLY ALA GLN MET ILE LYS MET LEU GLU GLU SER THR SEQRES 3 B 366 LEU PRO ILE ASP LYS ILE ARG TYR LEU ALA SER ALA ARG SEQRES 4 B 366 SER ALA GLY LYS SER LEU LYS PHE LYS ASP GLN ASP ILE SEQRES 5 B 366 THR ILE GLU GLU THR THR GLU THR ALA PHE GLU GLY VAL SEQRES 6 B 366 ASP ILE ALA LEU PHE SER ALA GLY SER SER THR SER ALA SEQRES 7 B 366 LYS TYR ALA PRO TYR ALA VAL LYS ALA GLY VAL VAL VAL SEQRES 8 B 366 VAL ASP ASN THR SER TYR PHE ARG GLN ASN PRO ASP VAL SEQRES 9 B 366 PRO LEU VAL VAL PRO GLU VAL ASN ALA HIS ALA LEU ASP SEQRES 10 B 366 ALA HIS ASN GLY ILE ILE ALA CYS PRO ASN CYS SER THR SEQRES 11 B 366 ILE GLN MET MET VAL ALA LEU GLU PRO VAL ARG GLN LYS SEQRES 12 B 366 TRP GLY LEU ASP ARG ILE ILE VAL SER THR TYR GLN ALA SEQRES 13 B 366 VAL SER GLY ALA GLY MET GLY ALA ILE LEU GLU THR GLN SEQRES 14 B 366 ARG GLU LEU ARG GLU VAL LEU ASN ASP GLY VAL LYS PRO SEQRES 15 B 366 CYS ASP LEU HIS ALA GLU ILE LEU PRO SER GLY GLY ASP SEQRES 16 B 366 LYS LYS HIS TYR PRO ILE ALA PHE ASN ALA LEU PRO GLN SEQRES 17 B 366 ILE ASP VAL PHE THR ASP ASN ASP TYR THR TYR GLU GLU SEQRES 18 B 366 MET LYS MET THR LYS GLU THR LYS LYS ILE MET GLU ASP SEQRES 19 B 366 ASP SER ILE ALA VAL SER ALA THR CYS VAL ARG ILE PRO SEQRES 20 B 366 VAL LEU SER ALA HIS SER GLU SER VAL TYR ILE GLU THR SEQRES 21 B 366 LYS GLU VAL ALA PRO ILE GLU GLU VAL LYS ALA ALA ILE SEQRES 22 B 366 ALA ALA PHE PRO GLY ALA VAL LEU GLU ASP ASP VAL ALA SEQRES 23 B 366 HIS GLN ILE TYR PRO GLN ALA ILE ASN ALA VAL GLY SER SEQRES 24 B 366 ARG ASP THR PHE VAL GLY ARG ILE ARG LYS ASP LEU ASP SEQRES 25 B 366 ALA GLU LYS GLY ILE HIS MET TRP VAL VAL SER ASP ASN SEQRES 26 B 366 LEU LEU LYS GLY ALA ALA TRP ASN SER VAL GLN ILE ALA SEQRES 27 B 366 GLU THR LEU HIS GLU ARG GLY LEU VAL ARG PRO THR ALA SEQRES 28 B 366 GLU LEU LYS PHE GLU LEU LYS LEU GLU HIS HIS HIS HIS SEQRES 29 B 366 HIS HIS HET NAP A 367 48 HET P4F A 368 15 HET NA A 369 1 HET EDO A 370 4 HET EDO A 371 4 HET EDO A 372 4 HET NAP B 367 48 HET P4F B 368 15 HET EDO B 369 4 HET EDO B 370 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM P4F 5,5-DIFLUORO-4-OXO-5-PHOSPHONO-D-NORVALINE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 P4F 2(C5 H8 F2 N O6 P) FORMUL 5 NA NA 1+ FORMUL 6 EDO 5(C2 H6 O2) FORMUL 13 HOH *609(H2 O) HELIX 1 1 GLY A 12 GLU A 24 1 13 HELIX 2 2 ALA A 72 GLY A 88 1 17 HELIX 3 3 VAL A 108 ALA A 113 1 6 HELIX 4 4 HIS A 114 HIS A 119 5 6 HELIX 5 5 ASN A 127 GLY A 145 1 19 HELIX 6 6 ALA A 156 ALA A 160 5 5 HELIX 7 7 GLY A 161 GLY A 179 1 19 HELIX 8 8 LYS A 181 LEU A 185 5 5 HELIX 9 9 THR A 218 MET A 232 1 15 HELIX 10 10 PRO A 265 ALA A 275 1 11 HELIX 11 11 ASP A 284 GLN A 288 5 5 HELIX 12 12 GLN A 292 VAL A 297 1 6 HELIX 13 13 ALA A 330 ARG A 344 1 15 HELIX 14 14 GLY B 12 GLU B 24 1 13 HELIX 15 15 GLY B 73 ALA B 87 1 15 HELIX 16 16 VAL B 108 ALA B 113 1 6 HELIX 17 17 HIS B 114 HIS B 119 5 6 HELIX 18 18 ASN B 127 GLY B 145 1 19 HELIX 19 19 ALA B 156 ALA B 160 5 5 HELIX 20 20 GLY B 161 GLY B 179 1 19 HELIX 21 21 LYS B 181 LEU B 185 5 5 HELIX 22 22 THR B 218 MET B 232 1 15 HELIX 23 23 PRO B 265 PHE B 276 1 12 HELIX 24 24 ASP B 284 GLN B 288 5 5 HELIX 25 25 GLN B 292 VAL B 297 1 6 HELIX 26 26 ALA B 330 ARG B 344 1 15 SHEET 1 A 6 GLU A 55 GLU A 56 0 SHEET 2 A 6 ILE A 29 ALA A 36 1 N ALA A 36 O GLU A 55 SHEET 3 A 6 TYR A 3 VAL A 8 1 N VAL A 7 O LEU A 35 SHEET 4 A 6 ILE A 67 PHE A 70 1 O LEU A 69 N VAL A 8 SHEET 5 A 6 VAL A 90 ASP A 93 1 O VAL A 92 N ALA A 68 SHEET 6 A 6 ILE A 122 ALA A 124 1 O ILE A 123 N VAL A 91 SHEET 1 B 2 SER A 44 PHE A 47 0 SHEET 2 B 2 GLN A 50 THR A 53 -1 O ILE A 52 N LEU A 45 SHEET 1 C 6 ALA A 238 THR A 242 0 SHEET 2 C 6 ARG A 148 TYR A 154 1 N ILE A 149 O ALA A 238 SHEET 3 C 6 HIS A 252 GLU A 259 -1 O SER A 255 N SER A 152 SHEET 4 C 6 GLY A 316 SER A 323 -1 O ILE A 317 N ILE A 258 SHEET 5 C 6 THR A 302 LYS A 309 -1 N ARG A 308 O HIS A 318 SHEET 6 C 6 ALA A 279 LEU A 281 1 N VAL A 280 O THR A 302 SHEET 1 D 7 SER B 44 PHE B 47 0 SHEET 2 D 7 GLN B 50 GLU B 56 -1 O ILE B 52 N LEU B 45 SHEET 3 D 7 ILE B 29 ALA B 36 1 N TYR B 34 O GLU B 55 SHEET 4 D 7 TYR B 3 VAL B 8 1 N VAL B 7 O LEU B 35 SHEET 5 D 7 ILE B 67 PHE B 70 1 O LEU B 69 N VAL B 8 SHEET 6 D 7 VAL B 90 ASP B 93 1 O VAL B 92 N ALA B 68 SHEET 7 D 7 ILE B 122 ALA B 124 1 O ILE B 123 N VAL B 91 SHEET 1 E 6 ALA B 238 THR B 242 0 SHEET 2 E 6 ARG B 148 TYR B 154 1 N ILE B 149 O ALA B 238 SHEET 3 E 6 HIS B 252 GLU B 259 -1 O TYR B 257 N ILE B 150 SHEET 4 E 6 GLY B 316 SER B 323 -1 O ILE B 317 N ILE B 258 SHEET 5 E 6 THR B 302 LYS B 309 -1 N PHE B 303 O VAL B 322 SHEET 6 E 6 ALA B 279 LEU B 281 1 N VAL B 280 O THR B 302 LINK O GLU A 343 NA NA A 369 1555 1555 2.34 CISPEP 1 LEU A 190 PRO A 191 0 1.49 CISPEP 2 LEU B 190 PRO B 191 0 -0.46 SITE 1 AC1 18 GLY A 9 THR A 11 GLY A 12 ALA A 13 SITE 2 AC1 18 ALA A 36 SER A 37 ARG A 39 SER A 40 SITE 3 AC1 18 THR A 57 ALA A 72 THR A 76 GLY A 161 SITE 4 AC1 18 MET A 162 GLY A 163 HOH A 644 HOH A 653 SITE 5 AC1 18 HOH A 727 HOH A 816 SITE 1 AC2 18 GLY B 9 THR B 11 GLY B 12 ALA B 13 SITE 2 AC2 18 ALA B 36 SER B 37 ARG B 39 SER B 40 SITE 3 AC2 18 ALA B 72 THR B 76 ALA B 160 GLY B 161 SITE 4 AC2 18 MET B 162 GLY B 163 LEU B 166 HOH B 447 SITE 5 AC2 18 HOH B 631 HOH B 649 SITE 1 AC3 11 ASN A 94 ARG A 99 ASN A 127 CYS A 128 SITE 2 AC3 11 GLN A 155 GLY A 159 ILE A 209 GLU A 220 SITE 3 AC3 11 LYS A 223 ARG A 245 HIS A 252 SITE 1 AC4 10 ARG B 99 ASN B 127 CYS B 128 GLN B 155 SITE 2 AC4 10 GLY B 159 ILE B 209 GLU B 220 LYS B 223 SITE 3 AC4 10 ARG B 245 HIS B 252 SITE 1 AC5 5 GLU A 343 ALA B 274 PHE B 276 ALA B 279 SITE 2 AC5 5 HOH B 698 SITE 1 AC6 9 THR A 26 EDO A 370 GLU B 24 SER B 25 SITE 2 AC6 9 TRP B 332 GLU B 339 HOH B 387 HOH B 446 SITE 3 AC6 9 HOH B 526 SITE 1 AC7 9 GLU A 24 SER A 25 TRP A 332 GLU A 339 SITE 2 AC7 9 HOH A 439 HOH A 481 THR B 26 EDO B 369 SITE 3 AC7 9 HOH B 526 SITE 1 AC8 5 SER A 250 GLY A 298 ASP A 324 LEU A 326 SITE 2 AC8 5 HOH A 377 SITE 1 AC9 5 SER B 250 GLY B 298 ASP B 324 LEU B 326 SITE 2 AC9 5 HOH B 532 SITE 1 BC1 4 LEU A 311 ASP A 312 HOH A 415 LYS B 229 CRYST1 60.014 98.702 64.528 90.00 100.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016663 0.000000 0.003174 0.00000 SCALE2 0.000000 0.010131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015776 0.00000