HEADER CELL ADHESION 16-DEC-10 3Q13 TITLE THE STRUCTURE OF THE CA2+-BINDING, GLYCOSYLATED F-SPONDIN DOMAIN OF F- TITLE 2 SPONDIN, A C2-DOMAIN VARIANT FROM EXTRACELLULAR MATRIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPONDIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 191-434; COMPND 5 SYNONYM: F-SPONDIN, VASCULAR SMOOTH MUSCLE CELL GROWTH-PROMOTING COMPND 6 FACTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOMO SAPIENS, KIAA0762, SPON1, VSGP; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32281; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DROSOPHILA SCHNEIDER 2 CELL; SOURCE 9 EXPRESSION_SYSTEM_CELL: SCHNEIDER 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT/BIP V5-HISA KEYWDS F-SPONDIN, FS-DOMAIN, MEMBRANE TARGETING, AXON GUIDANCE, C2-DOMAIN KEYWDS 2 DERIVATIVE, GLYCOSYLATED, EXTRACELLULAR MATRIX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,J.LAWLER REVDAT 3 13-SEP-23 3Q13 1 HETSYN REVDAT 2 29-JUL-20 3Q13 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 SSBOND LINK SITE ATOM REVDAT 1 29-JUN-11 3Q13 0 JRNL AUTH K.TAN,J.LAWLER JRNL TITL THE STRUCTURE OF THE CA2+-BINDING, GLYCOSYLATED F-SPONDIN JRNL TITL 2 DOMAIN OF F-SPONDIN - A C2-DOMAIN VARIANT IN AN JRNL TITL 3 EXTRACELLULAR MATRIX PROTEIN. JRNL REF BMC STRUCT.BIOL. V. 11 22 2011 JRNL REFN ESSN 1472-6807 JRNL PMID 21569239 JRNL DOI 10.1186/1472-6807-11-22 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2032 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2793 ; 1.551 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;37.225 ;24.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;13.495 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1557 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 0.888 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1989 ; 1.581 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 815 ; 2.753 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 793 ; 4.400 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 427 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9803 46.3710 23.2663 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0161 REMARK 3 T33: 0.0131 T12: 0.0019 REMARK 3 T13: -0.0014 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3331 L22: 0.3179 REMARK 3 L33: 0.3235 L12: -0.0959 REMARK 3 L13: 0.1578 L23: -0.2012 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0008 S13: -0.0311 REMARK 3 S21: -0.0675 S22: 0.0278 S23: 0.0223 REMARK 3 S31: 0.0561 S32: 0.0101 S33: -0.0280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 104.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB:3D34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 25% REMARK 280 (W/V) PEG 3350, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -60.12200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 104.13436 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1044 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 185 REMARK 465 SER A 186 REMARK 465 PRO A 187 REMARK 465 TRP A 188 REMARK 465 PRO A 189 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 ASP A 428 REMARK 465 LEU A 429 REMARK 465 ALA A 430 REMARK 465 PRO A 431 REMARK 465 GLU A 432 REMARK 465 GLU A 433 REMARK 465 LYS A 434 REMARK 465 THR A 435 REMARK 465 GLY A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 223 29.72 48.95 REMARK 500 SER A 276 -109.70 40.04 REMARK 500 SER A 276 -110.03 40.73 REMARK 500 LEU A 280 -67.14 -90.64 REMARK 500 ARG A 311 74.50 -103.50 REMARK 500 ASP A 325 44.85 -168.08 REMARK 500 LYS A 368 87.92 -155.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 325 OD1 REMARK 620 2 ASP A 325 OD2 51.4 REMARK 620 3 ASP A 354 OD2 83.0 112.2 REMARK 620 4 ASP A 354 OD1 93.6 79.7 53.0 REMARK 620 5 ASP A 358 O 85.6 81.1 149.8 155.9 REMARK 620 6 HOH A 942 O 82.2 130.8 71.0 123.9 79.8 REMARK 620 7 HOH A 943 O 132.4 81.7 128.7 84.4 78.6 136.8 REMARK 620 8 HOH A 946 O 156.9 151.7 84.1 93.9 96.3 75.5 70.2 REMARK 620 N 1 2 3 4 5 6 7 DBREF 3Q13 A 191 434 UNP Q9HCB6 SPON1_HUMAN 191 434 SEQADV 3Q13 ARG A 185 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 SER A 186 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 PRO A 187 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 TRP A 188 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 PRO A 189 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 GLY A 190 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 THR A 435 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 GLY A 436 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 437 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 438 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 439 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 440 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 441 UNP Q9HCB6 EXPRESSION TAG SEQADV 3Q13 HIS A 442 UNP Q9HCB6 EXPRESSION TAG SEQRES 1 A 258 ARG SER PRO TRP PRO GLY VAL THR ASP LYS PRO ILE LEU SEQRES 2 A 258 ASP CYS CYS ALA CYS GLY THR ALA LYS TYR ARG LEU THR SEQRES 3 A 258 PHE TYR GLY ASN TRP SER GLU LYS THR HIS PRO LYS ASP SEQRES 4 A 258 TYR PRO ARG ARG ALA ASN HIS TRP SER ALA ILE ILE GLY SEQRES 5 A 258 GLY SER HIS SER LYS ASN TYR VAL LEU TRP GLU TYR GLY SEQRES 6 A 258 GLY TYR ALA SER GLU GLY VAL LYS GLN VAL ALA GLU LEU SEQRES 7 A 258 GLY SER PRO VAL LYS MET GLU GLU GLU ILE ARG GLN GLN SEQRES 8 A 258 SER ASP GLU VAL LEU THR VAL ILE LYS ALA LYS ALA GLN SEQRES 9 A 258 TRP PRO ALA TRP GLN PRO LEU ASN VAL ARG ALA ALA PRO SEQRES 10 A 258 SER ALA GLU PHE SER VAL ASP ARG THR ARG HIS LEU MET SEQRES 11 A 258 SER PHE LEU THR MET MET GLY PRO SER PRO ASP TRP ASN SEQRES 12 A 258 VAL GLY LEU SER ALA GLU ASP LEU CYS THR LYS GLU CYS SEQRES 13 A 258 GLY TRP VAL GLN LYS VAL VAL GLN ASP LEU ILE PRO TRP SEQRES 14 A 258 ASP ALA GLY THR ASP SER GLY VAL THR TYR GLU SER PRO SEQRES 15 A 258 ASN LYS PRO THR ILE PRO GLN GLU LYS ILE ARG PRO LEU SEQRES 16 A 258 THR SER LEU ASP HIS PRO GLN SER PRO PHE TYR ASP PRO SEQRES 17 A 258 GLU GLY GLY SER ILE THR GLN VAL ALA ARG VAL VAL ILE SEQRES 18 A 258 GLU ARG ILE ALA ARG LYS GLY GLU GLN CYS ASN ILE VAL SEQRES 19 A 258 PRO ASP ASN VAL ASP ASP ILE VAL ALA ASP LEU ALA PRO SEQRES 20 A 258 GLU GLU LYS THR GLY HIS HIS HIS HIS HIS HIS MODRES 3Q13 ASN A 214 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET CA A 601 1 HET SO4 A 621 5 HET SO4 A 622 5 HET SO4 A 623 5 HET ACT A 641 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *344(H2 O) HELIX 1 1 SER A 253 GLY A 263 1 11 HELIX 2 2 PRO A 265 GLN A 274 1 10 HELIX 3 3 GLN A 275 ASP A 277 5 3 SHEET 1 A 4 SER A 302 ASP A 308 0 SHEET 2 A 4 THR A 204 GLY A 213 -1 N LEU A 209 O ALA A 303 SHEET 3 A 4 ALA A 401 LYS A 411 -1 O ILE A 408 N LYS A 206 SHEET 4 A 4 LYS A 345 LEU A 350 -1 N LEU A 350 O ALA A 401 SHEET 1 B 4 SER A 302 ASP A 308 0 SHEET 2 B 4 THR A 204 GLY A 213 -1 N LEU A 209 O ALA A 303 SHEET 3 B 4 ALA A 401 LYS A 411 -1 O ILE A 408 N LYS A 206 SHEET 4 B 4 ILE A 425 VAL A 426 1 O VAL A 426 N ARG A 410 SHEET 1 C 4 HIS A 230 TRP A 231 0 SHEET 2 C 4 LEU A 313 GLY A 321 -1 O GLY A 321 N HIS A 230 SHEET 3 C 4 ILE A 234 HIS A 239 -1 N GLY A 237 O SER A 315 SHEET 4 C 4 VAL A 279 ALA A 285 -1 O ILE A 283 N GLY A 236 SHEET 1 D 5 HIS A 230 TRP A 231 0 SHEET 2 D 5 LEU A 313 GLY A 321 -1 O GLY A 321 N HIS A 230 SHEET 3 D 5 TRP A 326 ASP A 334 -1 O GLU A 333 N MET A 314 SHEET 4 D 5 TRP A 353 ASP A 354 -1 O TRP A 353 N ASN A 327 SHEET 5 D 5 ARG A 377 PRO A 378 -1 O ARG A 377 N ASP A 354 SSBOND 1 CYS A 199 CYS A 336 1555 1555 2.05 SSBOND 2 CYS A 200 CYS A 340 1555 1555 2.07 SSBOND 3 CYS A 202 CYS A 415 1555 1555 2.10 LINK ND2 ASN A 214 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK OD1 ASP A 325 CA CA A 601 1555 1555 2.44 LINK OD2 ASP A 325 CA CA A 601 1555 1555 2.59 LINK OD2 ASP A 354 CA CA A 601 1555 1555 2.43 LINK OD1 ASP A 354 CA CA A 601 1555 1555 2.47 LINK O ASP A 358 CA CA A 601 1555 1555 2.39 LINK CA CA A 601 O HOH A 942 1555 1555 2.47 LINK CA CA A 601 O HOH A 943 1555 1555 2.44 LINK CA CA A 601 O HOH A 946 1555 1555 2.43 CISPEP 1 TRP A 289 PRO A 290 0 -4.51 CISPEP 2 GLY A 321 PRO A 322 0 -9.88 CISPEP 3 ILE A 371 PRO A 372 0 -0.04 CRYST1 120.244 120.244 86.362 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008316 0.004801 0.000000 0.00000 SCALE2 0.000000 0.009603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011579 0.00000