HEADER LYASE 20-DEC-10 3Q2D TITLE OPTIMIZATION OF THE IN SILICO DESIGNED KEMP ELIMINASE KE70 BY TITLE 2 COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBOSE PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, ISRAEL STRUCTURAL PROTEOMICS CENTER, ISPC, TIM, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KHERSONSKY,D.ROTHLISBERGE,A.M.WOLLACOTT,P.MURPHY,O.DYM,S.ALBECK, AUTHOR 2 G.KISS,K.N.HOUK,D.BAKER,D.S.TAWFIK,ISRAEL STRUCTURAL PROTEOMICS AUTHOR 3 CENTER (ISPC) REVDAT 3 01-NOV-23 3Q2D 1 REMARK REVDAT 2 19-MAR-14 3Q2D 1 JRNL VERSN REVDAT 1 09-FEB-11 3Q2D 0 JRNL AUTH O.KHERSONSKY,D.ROTHLISBERGER,A.M.WOLLACOTT,P.MURPHY,O.DYM, JRNL AUTH 2 S.ALBECK,G.KISS,K.N.HOUK,D.BAKER,D.S.TAWFIK JRNL TITL OPTIMIZATION OF THE IN-SILICO-DESIGNED KEMP ELIMINASE KE70 JRNL TITL 2 BY COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION JRNL REF J.MOL.BIOL. V. 407 391 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21277311 JRNL DOI 10.1016/J.JMB.2011.01.041 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 26309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1510 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : 3.33000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3667 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4981 ; 2.011 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;33.456 ;24.341 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.223 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2696 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2438 ; 1.092 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3887 ; 1.930 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 3.461 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1094 ; 5.195 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAMALONATE, IMIDAZOLE, BORIC ACID REMARK 280 PH4, 25% PEG 1500 , PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.65350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 22 REMARK 465 ASN A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 HIS A 253 REMARK 465 GLY A 254 REMARK 465 ASP A 255 REMARK 465 GLY A 256 REMARK 465 LYS A 257 REMARK 465 SER A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 SER A 261 REMARK 465 TYR A 262 REMARK 465 GLY A 263 REMARK 465 SER A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 ARG B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 LYS B 14 REMARK 465 LEU B 15 REMARK 465 MET B 16 REMARK 465 HIS B 17 REMARK 465 LEU B 18 REMARK 465 ALA B 19 REMARK 465 THR B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 ASN B 23 REMARK 465 ASP B 24 REMARK 465 ASP B 25 REMARK 465 ASP B 26 REMARK 465 GLY B 254 REMARK 465 ASP B 255 REMARK 465 GLY B 256 REMARK 465 LYS B 257 REMARK 465 SER B 258 REMARK 465 ALA B 259 REMARK 465 SER B 260 REMARK 465 SER B 261 REMARK 465 TYR B 262 REMARK 465 GLY B 263 REMARK 465 SER B 264 REMARK 465 LEU B 265 REMARK 465 GLU B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CE NZ REMARK 470 LYS A 60 CE NZ REMARK 470 ARG A 93 CZ NH1 NH2 REMARK 470 LYS A 155 CE NZ REMARK 470 GLU A 158 CD OE1 OE2 REMARK 470 LYS A 162 NZ REMARK 470 ARG A 209 NE CZ NH1 NH2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 LYS A 249 CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 LYS B 60 CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 ARG B 93 CZ NH1 NH2 REMARK 470 GLU B 129 CD OE1 OE2 REMARK 470 LYS B 148 CE NZ REMARK 470 ASP B 149 OD1 OD2 REMARK 470 LYS B 198 CE NZ REMARK 470 ARG B 209 CZ NH1 NH2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 223 CD OE1 OE2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 28 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 156.91 -42.12 REMARK 500 GLU A 143 63.08 70.17 REMARK 500 LYS A 148 -53.08 66.34 REMARK 500 ALA A 179 136.32 -32.62 REMARK 500 ALA A 230 61.76 -69.93 REMARK 500 GLU B 143 69.54 61.31 REMARK 500 LYS B 148 -66.27 61.84 REMARK 500 SER B 240 -151.83 -107.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NY A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NY B 273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NPU RELATED DB: PDB REMARK 900 RELATED ID: 3NPV RELATED DB: PDB REMARK 900 RELATED ID: 3NPW RELATED DB: PDB REMARK 900 RELATED ID: 3NPX RELATED DB: PDB REMARK 900 RELATED ID: 3NQ2 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ8 RELATED DB: PDB REMARK 900 RELATED ID: 3NQV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3Q2D A 1 272 PDB 3Q2D 3Q2D 1 272 DBREF 3Q2D B 1 272 PDB 3Q2D 3Q2D 1 272 SEQRES 1 A 272 MET ALA THR ASP LEU LYS ALA SER SER LEU ARG ALA LEU SEQRES 2 A 272 LYS LEU MET HIS LEU ALA THR SER ALA ASN ASP ASP ASP SEQRES 3 A 272 THR ASP GLU ASN VAL ILE ALA LEU CYS HIS GLN ALA LYS SEQRES 4 A 272 THR PRO VAL GLY ASN THR ASP ALA ILE PHE ILE TYR PRO SEQRES 5 A 272 ARG PHE ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN SEQRES 6 A 272 GLY THR PRO GLU ILE ARG ILE CYS THR SER THR ASN PHE SEQRES 7 A 272 PRO HIS GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU SEQRES 8 A 272 THR ARG ALA ALA ILE ALA TYR GLY ALA ASP SER VAL ALA SEQRES 9 A 272 VAL VAL PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU SEQRES 10 A 272 GLN VAL GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA SEQRES 11 A 272 CYS ALA ALA ALA ASN VAL LEU LEU ALA VAL ILE ILE GLU SEQRES 12 A 272 THR GLY GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SEQRES 13 A 272 SER GLU ILE SER ILE LYS ALA GLY ALA ASP ASN ILE VAL SEQRES 14 A 272 THR SER THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SEQRES 15 A 272 SER ALA ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY SEQRES 16 A 272 VAL GLU LYS THR VAL GLY PHE ILE PRO VAL GLY GLY VAL SEQRES 17 A 272 ARG THR ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA SEQRES 18 A 272 ASP GLU LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS SEQRES 19 A 272 TYR ALA PHE GLY ALA SER ALA SER LEU LEU ALA SER LEU SEQRES 20 A 272 LEU LYS ALA LEU GLY HIS GLY ASP GLY LYS SER ALA SER SEQRES 21 A 272 SER TYR GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 272 MET ALA THR ASP LEU LYS ALA SER SER LEU ARG ALA LEU SEQRES 2 B 272 LYS LEU MET HIS LEU ALA THR SER ALA ASN ASP ASP ASP SEQRES 3 B 272 THR ASP GLU ASN VAL ILE ALA LEU CYS HIS GLN ALA LYS SEQRES 4 B 272 THR PRO VAL GLY ASN THR ASP ALA ILE PHE ILE TYR PRO SEQRES 5 B 272 ARG PHE ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN SEQRES 6 B 272 GLY THR PRO GLU ILE ARG ILE CYS THR SER THR ASN PHE SEQRES 7 B 272 PRO HIS GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU SEQRES 8 B 272 THR ARG ALA ALA ILE ALA TYR GLY ALA ASP SER VAL ALA SEQRES 9 B 272 VAL VAL PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU SEQRES 10 B 272 GLN VAL GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA SEQRES 11 B 272 CYS ALA ALA ALA ASN VAL LEU LEU ALA VAL ILE ILE GLU SEQRES 12 B 272 THR GLY GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SEQRES 13 B 272 SER GLU ILE SER ILE LYS ALA GLY ALA ASP ASN ILE VAL SEQRES 14 B 272 THR SER THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SEQRES 15 B 272 SER ALA ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY SEQRES 16 B 272 VAL GLU LYS THR VAL GLY PHE ILE PRO VAL GLY GLY VAL SEQRES 17 B 272 ARG THR ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA SEQRES 18 B 272 ASP GLU LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS SEQRES 19 B 272 TYR ALA PHE GLY ALA SER ALA SER LEU LEU ALA SER LEU SEQRES 20 B 272 LEU LYS ALA LEU GLY HIS GLY ASP GLY LYS SER ALA SER SEQRES 21 B 272 SER TYR GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HET 3NY A 273 12 HET 3NY B 273 12 HETNAM 3NY 5-NITRO-1H-BENZOTRIAZOLE FORMUL 3 3NY 2(C6 H4 N4 O2) FORMUL 5 HOH *34(H2 O) HELIX 1 1 ASP A 4 LYS A 14 1 11 HELIX 2 2 THR A 27 ALA A 38 1 12 HELIX 3 3 TYR A 51 ARG A 53 5 3 HELIX 4 4 PHE A 54 GLN A 65 1 12 HELIX 5 5 ASP A 84 GLY A 99 1 16 HELIX 6 6 PRO A 108 ALA A 114 1 7 HELIX 7 7 GLU A 117 ALA A 134 1 18 HELIX 8 8 GLU A 143 LYS A 148 1 6 HELIX 9 9 ASP A 149 ALA A 163 1 15 HELIX 10 10 THR A 180 GLY A 195 1 16 HELIX 11 11 THR A 210 GLY A 226 1 17 HELIX 12 12 ALA A 241 LEU A 251 1 11 HELIX 13 13 THR B 27 ALA B 38 1 12 HELIX 14 14 TYR B 51 ARG B 53 5 3 HELIX 15 15 PHE B 54 GLN B 65 1 12 HELIX 16 16 ASP B 84 TYR B 98 1 15 HELIX 17 17 PRO B 108 ALA B 114 1 7 HELIX 18 18 ASN B 116 ALA B 134 1 19 HELIX 19 19 GLU B 143 LYS B 148 1 6 HELIX 20 20 ASP B 149 ALA B 163 1 15 HELIX 21 21 THR B 180 GLY B 195 1 16 HELIX 22 22 THR B 210 GLY B 226 1 17 HELIX 23 23 SER B 240 LEU B 251 1 12 SHEET 1 A 8 GLY A 201 ILE A 203 0 SHEET 2 A 8 ASN A 167 VAL A 169 1 N ILE A 168 O GLY A 201 SHEET 3 A 8 LEU A 137 ILE A 141 1 N VAL A 140 O VAL A 169 SHEET 4 A 8 SER A 102 VAL A 106 1 N VAL A 105 O ILE A 141 SHEET 5 A 8 ARG A 71 THR A 76 1 N THR A 74 O ALA A 104 SHEET 6 A 8 ALA A 47 PHE A 49 1 N ILE A 48 O CYS A 73 SHEET 7 A 8 MET A 16 ALA A 19 1 N LEU A 18 O PHE A 49 SHEET 8 A 8 PHE A 237 SER A 240 1 O PHE A 237 N HIS A 17 SHEET 1 B 2 LYS A 39 THR A 40 0 SHEET 2 B 2 GLY A 43 ASN A 44 -1 O GLY A 43 N THR A 40 SHEET 1 C 2 LYS B 39 THR B 40 0 SHEET 2 C 2 GLY B 43 ASN B 44 -1 O GLY B 43 N THR B 40 SHEET 1 D 6 ALA B 47 PHE B 49 0 SHEET 2 D 6 ARG B 71 THR B 76 1 O CYS B 73 N ILE B 48 SHEET 3 D 6 SER B 102 VAL B 106 1 O ALA B 104 N THR B 74 SHEET 4 D 6 LEU B 137 ILE B 141 1 O ILE B 141 N VAL B 105 SHEET 5 D 6 ASN B 167 VAL B 169 1 O VAL B 169 N VAL B 140 SHEET 6 D 6 GLY B 201 ILE B 203 1 O GLY B 201 N ILE B 168 CISPEP 1 PHE A 78 PRO A 79 0 2.67 CISPEP 2 PHE B 78 PRO B 79 0 -2.17 SITE 1 AC1 8 HIS A 17 PHE A 49 SER A 102 ALA A 104 SITE 2 AC1 8 ALA A 139 ILE A 203 VAL A 205 GLY A 238 SITE 1 AC2 6 PHE B 49 CYS B 73 ALA B 104 ALA B 139 SITE 2 AC2 6 ILE B 203 VAL B 205 CRYST1 48.837 41.307 138.781 90.00 95.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020476 0.000000 0.001919 0.00000 SCALE2 0.000000 0.024209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007237 0.00000