HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-DEC-10 3Q2M TITLE CRYSTAL STRUCTURE OF SPECTINOMYCIN PHOSPHOTRANSFERASE, APH(9)-IA, TITLE 2 PROTEIN KINASE INHIBITOR CKI-7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTINOMYCIN PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA 130B; SOURCE 3 ORGANISM_TAXID: 866628; SOURCE 4 STRAIN: SEROGROUP 1 STRAIN 130B; SOURCE 5 GENE: APH, LPW_21961; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BB101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SER/THR/TYR PROTEIN KINASE, PHOSPHOTRANSFERASE, PHOSPHORYLATION, KEYWDS 2 CYTOSOL, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BERGHUIS,D.H.FONG,B.XIONG,J.HWANG REVDAT 3 13-SEP-23 3Q2M 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3Q2M 1 JRNL VERSN REVDAT 1 18-MAY-11 3Q2M 0 JRNL AUTH D.H.FONG,B.XIONG,J.HWANG,A.M.BERGHUIS JRNL TITL CRYSTAL STRUCTURES OF TWO AMINOGLYCOSIDE KINASES BOUND WITH JRNL TITL 2 A EUKARYOTIC PROTEIN KINASE INHIBITOR. JRNL REF PLOS ONE V. 6 19589 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21573013 JRNL DOI 10.1371/JOURNAL.PONE.0019589 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 70106.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 9913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1463 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 196.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.32000 REMARK 3 B22 (A**2) : -6.32000 REMARK 3 B33 (A**2) : 12.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.630 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.710 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 41.27 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3Q2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3I1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.2M CALCIUM ACETATE, REMARK 280 MANGANESE CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.67467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.34933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.34933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.67467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.67467 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 332 REMARK 465 GLU A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 ASP A 34 CB CG OD1 OD2 REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 HIS A 58 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ALA A 86 CB REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASN A 165 CB CG OD1 ND2 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLU A 269 CB CG CD OE1 OE2 REMARK 470 SER A 298 CB OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 119 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 92 N HIS A 94 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 -108.37 -48.98 REMARK 500 ILE A 6 176.54 -55.88 REMARK 500 ALA A 8 -106.14 -29.88 REMARK 500 THR A 35 30.82 -146.49 REMARK 500 ASN A 36 25.03 81.81 REMARK 500 SER A 46 -27.73 -140.18 REMARK 500 TYR A 55 -111.95 -130.44 REMARK 500 TYR A 57 37.43 -80.69 REMARK 500 HIS A 58 -68.56 -104.10 REMARK 500 GLU A 60 -146.01 -161.57 REMARK 500 ILE A 61 76.55 -152.89 REMARK 500 GLU A 76 25.90 -66.05 REMARK 500 LYS A 93 -46.06 0.02 REMARK 500 ALA A 105 110.78 -176.22 REMARK 500 GLN A 140 -63.21 -168.64 REMARK 500 TYR A 146 42.89 72.01 REMARK 500 TYR A 158 -58.95 -25.48 REMARK 500 ASP A 164 100.39 -161.35 REMARK 500 PRO A 201 157.21 -45.65 REMARK 500 ASP A 202 88.07 -160.27 REMARK 500 LEU A 203 6.67 -62.47 REMARK 500 GLU A 223 -15.99 -167.27 REMARK 500 GLU A 224 -12.10 -141.30 REMARK 500 ASP A 230 87.34 63.08 REMARK 500 GLU A 233 54.62 -117.55 REMARK 500 ILE A 270 -144.80 -129.22 REMARK 500 SER A 298 -89.20 140.02 REMARK 500 ASN A 300 18.55 -57.71 REMARK 500 ASN A 302 35.33 -84.63 REMARK 500 GLN A 304 76.64 51.82 REMARK 500 SER A 305 -57.36 165.77 REMARK 500 ALA A 328 53.16 -91.63 REMARK 500 THR A 329 91.46 -44.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HOH A 507 O 74.5 REMARK 620 3 HOH A 519 O 78.2 79.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CKI A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I0O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SPECTINOMYCIN PHOSPHOTRANSFERASE, APH(9)-IA, REMARK 900 IN COMPLEX WITH ADP AND SPECTINOMCYIN REMARK 900 RELATED ID: 3I0Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AMP-BOUND COMPLEX OF SPECTINOMYCIN REMARK 900 PHOSPHOTRANSFERASE, APH(9)-IA REMARK 900 RELATED ID: 3I1A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO SPECTINOMYCIN PHOSPHOTRANSFERASE, APH(9)-IA DBREF 3Q2M A 1 331 UNP E1XXQ2 E1XXQ2_LEGPN 1 331 SEQADV 3Q2M LEU A 332 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M GLU A 333 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 334 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 335 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 336 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 337 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 338 UNP E1XXQ2 EXPRESSION TAG SEQADV 3Q2M HIS A 339 UNP E1XXQ2 EXPRESSION TAG SEQRES 1 A 339 MET LEU LYS GLN PRO ILE GLN ALA GLN GLN LEU ILE GLU SEQRES 2 A 339 LEU LEU LYS VAL HIS TYR GLY ILE ASP ILE HIS THR ALA SEQRES 3 A 339 GLN PHE ILE GLN GLY GLY ALA ASP THR ASN ALA PHE ALA SEQRES 4 A 339 TYR GLN ALA ASP SER GLU SER LYS SER TYR PHE ILE LYS SEQRES 5 A 339 LEU LYS TYR GLY TYR HIS ASP GLU ILE ASN LEU SER ILE SEQRES 6 A 339 ILE ARG LEU LEU HIS ASP SER GLY ILE LYS GLU ILE ILE SEQRES 7 A 339 PHE PRO ILE HIS THR LEU GLU ALA LYS LEU PHE GLN GLN SEQRES 8 A 339 LEU LYS HIS PHE LYS ILE ILE ALA TYR PRO PHE ILE HIS SEQRES 9 A 339 ALA PRO ASN GLY PHE THR GLN ASN LEU THR GLY LYS GLN SEQRES 10 A 339 TRP LYS GLN LEU GLY LYS VAL LEU ARG GLN ILE HIS GLU SEQRES 11 A 339 THR SER VAL PRO ILE SER ILE GLN GLN GLN LEU ARG LYS SEQRES 12 A 339 GLU ILE TYR SER PRO LYS TRP ARG GLU ILE VAL ARG SER SEQRES 13 A 339 PHE TYR ASN GLN ILE GLU PHE ASP ASN SER ASP ASP LYS SEQRES 14 A 339 LEU THR ALA ALA PHE LYS SER PHE PHE ASN GLN ASN SER SEQRES 15 A 339 ALA ALA ILE HIS ARG LEU VAL ASP THR SER GLU LYS LEU SEQRES 16 A 339 SER LYS LYS ILE GLN PRO ASP LEU ASP LYS TYR VAL LEU SEQRES 17 A 339 CYS HIS SER ASP ILE HIS ALA GLY ASN VAL LEU VAL GLY SEQRES 18 A 339 ASN GLU GLU SER ILE TYR ILE ILE ASP TRP ASP GLU PRO SEQRES 19 A 339 MET LEU ALA PRO LYS GLU ARG ASP LEU MET PHE ILE GLY SEQRES 20 A 339 GLY GLY VAL GLY ASN VAL TRP ASN LYS PRO HIS GLU ILE SEQRES 21 A 339 GLN TYR PHE TYR GLU GLY TYR GLY GLU ILE ASN VAL ASP SEQRES 22 A 339 LYS THR ILE LEU SER TYR TYR ARG HIS GLU ARG ILE VAL SEQRES 23 A 339 GLU ASP ILE ALA VAL TYR GLY GLN ASP LEU LEU SER ARG SEQRES 24 A 339 ASN GLN ASN ASN GLN SER ARG LEU GLU SER PHE LYS TYR SEQRES 25 A 339 PHE LYS GLU MET PHE ASP PRO ASN ASN VAL VAL GLU ILE SEQRES 26 A 339 ALA PHE ALA THR GLU GLN LEU GLU HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS HET CKI A 400 18 HET NI A 401 1 HETNAM CKI N-(2-AMINOETHYL)-5-CHLOROISOQUINOLINE-8-SULFONAMIDE HETNAM NI NICKEL (II) ION FORMUL 2 CKI C11 H12 CL N3 O2 S FORMUL 3 NI NI 2+ FORMUL 4 HOH *25(H2 O) HELIX 1 1 GLN A 7 TYR A 19 1 13 HELIX 2 2 ASN A 62 GLY A 73 1 12 HELIX 3 3 THR A 114 THR A 131 1 18 HELIX 4 4 PRO A 134 GLN A 139 1 6 HELIX 5 5 PRO A 148 TYR A 158 1 11 HELIX 6 6 ASN A 159 ILE A 161 5 3 HELIX 7 7 ASP A 168 ASN A 181 1 14 HELIX 8 8 ASN A 181 ILE A 199 1 19 HELIX 9 9 HIS A 214 GLY A 216 5 3 HELIX 10 10 LYS A 239 MET A 244 1 6 HELIX 11 11 GLY A 249 VAL A 253 5 5 HELIX 12 12 LYS A 256 GLY A 268 1 13 HELIX 13 13 ASP A 273 LEU A 296 1 24 HELIX 14 14 ARG A 299 ASN A 303 5 5 HELIX 15 15 SER A 305 MET A 316 1 12 HELIX 16 16 ASN A 321 ALA A 328 1 8 SHEET 1 A 5 ILE A 23 ILE A 29 0 SHEET 2 A 5 ALA A 37 SER A 44 -1 O ASP A 43 N THR A 25 SHEET 3 A 5 SER A 48 LYS A 54 -1 O TYR A 49 N ALA A 42 SHEET 4 A 5 PHE A 95 PRO A 101 -1 O TYR A 100 N PHE A 50 SHEET 5 A 5 GLN A 90 LEU A 92 -1 N LEU A 92 O PHE A 95 SHEET 1 B 3 ARG A 142 LYS A 143 0 SHEET 2 B 3 MET A 235 PRO A 238 1 O LEU A 236 N ARG A 142 SHEET 3 B 3 TYR A 206 CYS A 209 -1 N CYS A 209 O MET A 235 SHEET 1 C 2 VAL A 218 VAL A 220 0 SHEET 2 C 2 ILE A 226 ILE A 228 -1 O TYR A 227 N LEU A 219 LINK NE2 HIS A 70 NI NI A 401 1555 1555 2.23 LINK NI NI A 401 O HOH A 507 1555 1555 2.55 LINK NI NI A 401 O HOH A 519 1555 1555 2.04 SITE 1 AC1 6 PHE A 50 ILE A 78 PRO A 101 PHE A 102 SITE 2 AC1 6 ILE A 103 ALA A 105 SITE 1 AC2 3 HIS A 70 HOH A 507 HOH A 519 CRYST1 74.300 74.300 137.024 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013459 0.007771 0.000000 0.00000 SCALE2 0.000000 0.015541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007298 0.00000