HEADER TRANSFERASE 20-DEC-10 3Q2Q TITLE CRYSTAL STRUCTURE OF GERANYLGERANYL PYROPHOSPHATE SYNTHASE FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM COMPLEXED WITH CALCIUM AND ISOPRENYL TITLE 3 DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE OCTAPRENYL-DIPHOSPHATE SYNTHASE PROTEIN; COMPND 5 EC: 2.5.1.30, 2.5.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 GENE: CG0559, CGL0473, ISPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS ISOPRENYL DIPHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NYSGRC, NEW YORK STRUCTURAL GENOMIX RESEARCH KEYWDS 3 CONSORTIUM, NYSGXRC, ISOPRENE BIOSYNTHESIS, TRANSFERASE, NEW YORK KEYWDS 4 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,M.RUTTER,J.M.SAUDER,C.D.POULTER,J.A.GERLT, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 9 13-SEP-23 3Q2Q 1 REMARK REVDAT 8 10-FEB-21 3Q2Q 1 AUTHOR REMARK SEQADV LINK REVDAT 7 21-NOV-18 3Q2Q 1 AUTHOR REVDAT 6 14-MAY-14 3Q2Q 1 REMARK REVDAT 5 08-MAY-13 3Q2Q 1 HET HETATM REVDAT 4 24-APR-13 3Q2Q 1 JRNL REVDAT 3 27-MAR-13 3Q2Q 1 JRNL REVDAT 2 13-MAR-13 3Q2Q 1 JRNL VERSN REVDAT 1 12-JAN-11 3Q2Q 0 JRNL AUTH F.H.WALLRAPP,J.J.PAN,G.RAMAMOORTHY,D.E.ALMONACID, JRNL AUTH 2 B.S.HILLERICH,R.SEIDEL,Y.PATSKOVSKY,P.C.BABBITT,S.C.ALMO, JRNL AUTH 3 M.P.JACOBSON,C.D.POULTER JRNL TITL PREDICTION OF FUNCTION FOR THE POLYPRENYL TRANSFERASE JRNL TITL 2 SUBGROUP IN THE ISOPRENOID SYNTHASE SUPERFAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1196 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23493556 JRNL DOI 10.1073/PNAS.1300632110 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1118 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -2.98000 REMARK 3 B12 (A**2) : 0.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2588 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3535 ; 1.030 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 3.928 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;33.565 ;24.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;14.660 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1977 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1622 ; 3.521 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2625 ; 5.098 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 6.922 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 898 ;10.196 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH 4.5, 30% REMARK 280 PEG400, 200MM CALCIUM ACETATE, 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.61267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.30633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.30633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.61267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 107.48850 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -62.05851 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 ARG A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 VAL A 19 REMARK 465 SER A 20 REMARK 465 THR A 21 REMARK 465 THR A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 SER A 120 REMARK 465 MET A 121 REMARK 465 ARG A 122 REMARK 465 ARG A 123 REMARK 465 GLY A 124 REMARK 465 VAL A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 249 REMARK 465 SER A 250 REMARK 465 GLY A 251 REMARK 465 LYS A 252 REMARK 465 GLY A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 16.20 87.93 REMARK 500 ARG A 182 -111.77 47.07 REMARK 500 GLU A 246 -72.86 -104.86 REMARK 500 THR A 286 -33.02 -149.20 REMARK 500 GLU A 290 -90.53 -175.60 REMARK 500 GLU A 290 -90.53 -92.80 REMARK 500 SER A 332 165.24 176.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 360 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 113 OD2 REMARK 620 2 ASP A 113 OD1 50.3 REMARK 620 3 ASP A 117 OD1 94.6 97.5 REMARK 620 4 ASP A 117 OD2 79.3 118.6 48.6 REMARK 620 5 DMA A 359 O1A 111.5 95.4 153.4 139.3 REMARK 620 6 DMA A 359 O3B 91.9 132.2 116.0 70.7 69.8 REMARK 620 7 HOH A 552 O 117.1 67.5 83.7 131.7 79.9 144.3 REMARK 620 8 HOH A 553 O 162.9 143.8 92.4 93.8 64.1 71.0 79.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 361 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD2 REMARK 620 2 HOH A 548 O 60.5 REMARK 620 3 HOH A 549 O 73.3 63.4 REMARK 620 4 HOH A 550 O 137.6 77.3 93.4 REMARK 620 5 HOH A 557 O 88.2 89.4 152.1 86.2 REMARK 620 6 HOH A 562 O 130.4 168.2 112.8 92.0 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 364 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 300 OE2 REMARK 620 2 GLU A 300 OE1 46.0 REMARK 620 3 SER A 303 OG 81.3 84.6 REMARK 620 4 HOH A 402 O 107.8 65.2 72.6 REMARK 620 5 HOH A 437 O 90.7 136.5 84.7 147.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMA A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 364 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LMD RELATED DB: PDB REMARK 900 UNLIGANDED STRUCTURE REMARK 900 RELATED ID: NYSGXRC-20015A RELATED DB: TARGETDB DBREF 3Q2Q A 2 350 UNP Q8NT37 Q8NT37_CORGL 2 350 SEQADV 3Q2Q MET A -1 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q SER A 0 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q LEU A 1 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q GLU A 351 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q GLY A 352 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 353 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 354 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 355 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 356 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 357 UNP Q8NT37 EXPRESSION TAG SEQADV 3Q2Q HIS A 358 UNP Q8NT37 EXPRESSION TAG SEQRES 1 A 360 MET SER LEU SER SER GLY ARG THR VAL PRO THR ARG SER SEQRES 2 A 360 HIS GLY LEU GLY LYS GLU GLY VAL SER THR THR GLY ALA SEQRES 3 A 360 SER GLN VAL GLU PHE GLY ASP PRO GLU LEU THR ALA ARG SEQRES 4 A 360 ILE ASN ASP ALA MET VAL GLN VAL GLU GLU LEU LEU HIS SEQRES 5 A 360 THR GLU LEU SER SER GLY GLU ASP PHE LEU VAL ASP ILE SEQRES 6 A 360 VAL MET HIS LEU THR ARG ALA GLY GLY LYS ARG PHE ARG SEQRES 7 A 360 PRO MET PHE ALA LEU LEU ALA SER GLU PHE GLY GLU LYS SEQRES 8 A 360 PRO LEU SER GLU ASN VAL ILE LYS ALA ALA VAL VAL VAL SEQRES 9 A 360 GLU ILE THR HIS LEU ALA THR LEU TYR HIS ASP ASP VAL SEQRES 10 A 360 MET ASP GLU ALA SER MET ARG ARG GLY VAL PRO SER ALA SEQRES 11 A 360 ASN ALA ARG TRP ASP ASN SER VAL ALA ILE LEU ALA GLY SEQRES 12 A 360 ASP ILE LEU LEU ALA HIS ALA SER GLY LEU MET SER GLN SEQRES 13 A 360 LEU GLY THR ASP THR VAL ALA HIS PHE ALA GLU THR PHE SEQRES 14 A 360 GLY GLU LEU VAL THR GLY GLN MET ARG GLU THR VAL GLY SEQRES 15 A 360 PRO ARG ASP THR ASP PRO ILE GLU HIS TYR THR ASN VAL SEQRES 16 A 360 ILE ARG GLU LYS THR GLY VAL LEU ILE ALA SER ALA GLY SEQRES 17 A 360 TYR LEU GLY ALA MET HIS ALA GLY ALA ALA PRO GLU HIS SEQRES 18 A 360 ILE ASP ALA LEU LYS ASN PHE GLY ALA ALA VAL GLY MET SEQRES 19 A 360 ILE PHE GLN ILE VAL ASP ASP ILE ILE ASP ILE PHE SER SEQRES 20 A 360 GLU THR HIS GLU SER GLY LYS THR PRO GLY THR ASP LEU SEQRES 21 A 360 ARG GLU GLY VAL PHE THR LEU PRO VAL LEU TYR ALA LEU SEQRES 22 A 360 ARG GLU ASP THR PRO VAL GLY ALA GLU LEU ARG ASP ILE SEQRES 23 A 360 LEU THR GLY PRO LEU GLU ASP ASP GLU THR VAL ASN HIS SEQRES 24 A 360 VAL LEU GLU LEU LEU SER GLN SER GLY GLY ARG GLN ALA SEQRES 25 A 360 ALA LEU ASP GLU VAL TYR ARG TYR MET ASP ILE ALA ASN SEQRES 26 A 360 ALA GLU LEU ASP ARG LEU PRO ASP SER THR VAL LYS GLU SEQRES 27 A 360 ALA LEU ARG ASN LEU ALA THR PHE THR VAL LYS ARG VAL SEQRES 28 A 360 GLY GLU GLY HIS HIS HIS HIS HIS HIS HET DMA A 359 14 HET CA A 360 1 HET CA A 361 1 HET GOL A 362 6 HET GOL A 363 6 HET CA A 364 1 HETNAM DMA DIMETHYLALLYL DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DMA C5 H12 O7 P2 FORMUL 3 CA 3(CA 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *204(H2 O) HELIX 1 1 ASP A 31 SER A 54 1 24 HELIX 2 2 GLU A 57 THR A 68 1 12 HELIX 3 3 ARG A 74 GLU A 85 1 12 HELIX 4 4 SER A 92 GLU A 118 1 27 HELIX 5 5 ALA A 130 GLY A 156 1 27 HELIX 6 6 GLY A 156 GLY A 180 1 25 HELIX 7 7 ASP A 185 THR A 198 1 14 HELIX 8 8 THR A 198 HIS A 212 1 15 HELIX 9 9 ALA A 216 SER A 245 1 30 HELIX 10 10 GLY A 255 GLY A 261 1 7 HELIX 11 11 THR A 264 LEU A 271 1 8 HELIX 12 12 THR A 275 LEU A 285 1 11 HELIX 13 13 ASP A 291 SER A 305 1 15 HELIX 14 14 GLY A 306 ASP A 327 1 22 HELIX 15 15 SER A 332 ARG A 348 1 17 LINK OD2 ASP A 113 CA CA A 360 1555 1555 2.39 LINK OD1 ASP A 113 CA CA A 360 1555 1555 2.74 LINK OD1 ASP A 117 CA CA A 360 1555 1555 2.58 LINK OD2 ASP A 117 CA CA A 360 1555 1555 2.74 LINK OD2BASP A 238 CA CA A 361 1555 1555 2.43 LINK OE2 GLU A 300 CA CA A 364 1555 1555 2.55 LINK OE1 GLU A 300 CA CA A 364 1555 1555 2.98 LINK OG SER A 303 CA CA A 364 1555 1555 2.49 LINK O1A DMA A 359 CA CA A 360 1555 1555 2.26 LINK O3B DMA A 359 CA CA A 360 1555 1555 2.33 LINK CA CA A 360 O HOH A 552 1555 1555 2.18 LINK CA CA A 360 O HOH A 553 1555 1555 2.76 LINK CA CA A 361 O HOH A 548 1555 1555 2.64 LINK CA CA A 361 O HOH A 549 1555 1555 2.41 LINK CA CA A 361 O HOH A 550 1555 1555 2.86 LINK CA CA A 361 O HOH A 557 1555 1555 2.46 LINK CA CA A 361 O HOH A 562 1555 1555 3.11 LINK CA CA A 364 O HOH A 402 1555 1555 2.27 LINK CA CA A 364 O HOH A 437 1555 1555 2.40 SITE 1 AC1 14 THR A 109 LEU A 110 ASP A 113 ASP A 117 SITE 2 AC1 14 GLN A 174 LYS A 197 CA A 360 HOH A 496 SITE 3 AC1 14 HOH A 541 HOH A 552 HOH A 553 HOH A 554 SITE 4 AC1 14 HOH A 555 HOH A 565 SITE 1 AC2 5 ASP A 113 ASP A 117 DMA A 359 HOH A 552 SITE 2 AC2 5 HOH A 553 SITE 1 AC3 5 ASP A 238 HOH A 548 HOH A 549 HOH A 550 SITE 2 AC3 5 HOH A 557 SITE 1 AC4 5 ARG A 74 PHE A 75 ARG A 76 HIS A 106 SITE 2 AC4 5 HOH A 369 SITE 1 AC5 4 ASP A 221 LYS A 224 ASN A 225 GLU A 293 SITE 1 AC6 6 GLU A 57 GLU A 300 SER A 303 HOH A 402 SITE 2 AC6 6 HOH A 437 HOH A 484 CRYST1 71.659 71.659 150.919 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013955 0.008057 0.000000 0.00000 SCALE2 0.000000 0.016114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006626 0.00000