HEADER TRANSFERASE, CHAPERONE/GENE REGULATION 21-DEC-10 3Q33 TITLE STRUCTURE OF THE RTT109-ACCOA/VPS75 COMPLEX AND IMPLICATIONS FOR TITLE 2 CHAPERONE-MEDIATED HISTONE ACETYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE RTT109; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATOR OF TY1 TRANSPOSITION PROTEIN 109; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 75; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 1-232; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HISTONE H3; COMPND 14 CHAIN: D; COMPND 15 FRAGMENT: UNP RESIDUES 1-14; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: KIM2, L1377, REM50, RTT109, SCY_3578, YLL002W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: 6HIS-TEV-PCDF-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: N0890, VPS75, YNL246W; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: GST-TEV-PRSF-DUET; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 24 ORGANISM_TAXID: 32630 KEYWDS RTT109:VPS75=2:2 STOICHIOMETRY COMPLEX, HISTONE ACETYLTRANSFERASE, KEYWDS 2 WITH ACETYL COENZYME A (ACOA) BOUND, AUTOACETYLATION ON RTT109 KEYWDS 3 LYS290, NUCLEAR, TRANSFERASE-CHAPERONE-TRANSCRIPTION REGULATOR KEYWDS 4 COMPLEX, TRANSFERASE-CHAPERONE COMPLEX, TRANSFERASE, CHAPERONE-GENE KEYWDS 5 REGULATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,H.YUAN,K.MEETH,R.MARMORSTEIN REVDAT 7 06-NOV-24 3Q33 1 REMARK REVDAT 6 06-DEC-23 3Q33 1 REMARK REVDAT 5 13-SEP-23 3Q33 1 REMARK SEQADV LINK REVDAT 4 18-APR-12 3Q33 1 HELIX VERSN REVDAT 3 23-FEB-11 3Q33 1 JRNL REVDAT 2 16-FEB-11 3Q33 1 JRNL REVDAT 1 02-FEB-11 3Q33 0 JRNL AUTH Y.TANG,M.A.HOLBERT,N.DELGOSHAIE,H.WURTELE,B.GUILLEMETTE, JRNL AUTH 2 K.MEETH,H.YUAN,P.DROGARIS,E.H.LEE,C.DURETTE,P.THIBAULT, JRNL AUTH 3 A.VERREAULT,P.A.COLE,R.MARMORSTEIN JRNL TITL STRUCTURE OF THE RTT109-ACCOA/VPS75 COMPLEX AND IMPLICATIONS JRNL TITL 2 FOR CHAPERONE-MEDIATED HISTONE ACETYLATION. JRNL REF STRUCTURE V. 19 221 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21256037 JRNL DOI 10.1016/J.STR.2010.12.012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.TANG,M.A.HOLBERT,H.WURTELE,K.MEETH,W.ROCHA,M.GHARIB, REMARK 1 AUTH 2 E.JIANG,P.THIBAULT,A.VERREAULT,A.VERRAULT,P.A.COLE, REMARK 1 AUTH 3 R.MARMORSTEIN REMARK 1 TITL FUNGAL RTT109 HISTONE ACETYLTRANSFERASE IS AN UNEXPECTED REMARK 1 TITL 2 STRUCTURAL HOMOLOG OF METAZOAN P300/CBP. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 15 738 2008 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 18568037 REMARK 1 DOI 10.1038/NSMB.1448 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.TANG,K.MEETH,E.JIANG,C.LUO,R.MARMORSTEIN REMARK 1 TITL STRUCTURE OF VPS75 AND IMPLICATIONS FOR HISTONE CHAPERONE REMARK 1 TITL 2 FUNCTION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 105 12206 2008 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 18723682 REMARK 1 DOI 10.1073/PNAS.0802393105 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE: 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.9275 - 2.8000 0.00 2251 119 0.2983 0.3532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5170 REMARK 3 ANGLE : 1.154 6984 REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:127) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3715 19.0239 -0.1635 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.2565 REMARK 3 T33: 0.3898 T12: 0.0808 REMARK 3 T13: -0.0085 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.6329 L22: 0.6236 REMARK 3 L33: 3.2266 L12: 1.2179 REMARK 3 L13: -2.0191 L23: -1.5910 REMARK 3 S TENSOR REMARK 3 S11: 0.2486 S12: 0.3973 S13: 0.3086 REMARK 3 S21: 0.2953 S22: -0.0162 S23: 0.1610 REMARK 3 S31: -0.3090 S32: -0.6945 S33: -0.1766 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 128:176) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8180 29.5847 33.4727 REMARK 3 T TENSOR REMARK 3 T11: 1.0364 T22: 0.5735 REMARK 3 T33: 0.7009 T12: 0.1466 REMARK 3 T13: 0.1056 T23: -0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.2725 L22: 1.4500 REMARK 3 L33: 3.4421 L12: 0.4849 REMARK 3 L13: 0.1830 L23: -1.3190 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.0325 S13: 0.0060 REMARK 3 S21: 0.6324 S22: 0.5953 S23: -0.4723 REMARK 3 S31: -1.4994 S32: -0.2407 S33: -0.3855 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 177:269) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3067 14.4705 -11.8491 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.3604 REMARK 3 T33: 0.2442 T12: 0.0364 REMARK 3 T13: -0.0416 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.9783 L22: 1.6758 REMARK 3 L33: 3.4298 L12: -0.0400 REMARK 3 L13: -2.2849 L23: -1.9533 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.4616 S13: 0.0269 REMARK 3 S21: -0.2153 S22: -0.1838 S23: -0.0419 REMARK 3 S31: 0.4130 S32: -0.4947 S33: 0.1863 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 270:321) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4862 20.2526 -3.2103 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.5052 REMARK 3 T33: 0.8830 T12: -0.0195 REMARK 3 T13: -0.0291 T23: 0.1918 REMARK 3 L TENSOR REMARK 3 L11: 1.5455 L22: 1.0298 REMARK 3 L33: 0.4295 L12: 1.0498 REMARK 3 L13: 0.6607 L23: 0.5674 REMARK 3 S TENSOR REMARK 3 S11: 0.1138 S12: 0.6598 S13: -0.3188 REMARK 3 S21: 0.0886 S22: -0.2133 S23: -1.5073 REMARK 3 S31: -0.0157 S32: 0.3777 S33: 0.0509 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 322:404) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1341 11.0055 4.4664 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.2601 REMARK 3 T33: 0.2946 T12: 0.0350 REMARK 3 T13: 0.0679 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 1.4057 L22: 1.3979 REMARK 3 L33: 2.6298 L12: 0.9563 REMARK 3 L13: -1.6936 L23: -0.9424 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.4469 S13: 0.2520 REMARK 3 S21: 0.2694 S22: -0.0847 S23: 0.1451 REMARK 3 S31: 0.1485 S32: -0.4815 S33: -0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 9:114) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3738 -1.8218 39.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.6959 T22: 0.2847 REMARK 3 T33: 0.2586 T12: 0.1440 REMARK 3 T13: 0.2329 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 1.4370 L22: 0.2536 REMARK 3 L33: 1.0628 L12: -0.6166 REMARK 3 L13: 0.6801 L23: -0.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.2934 S12: -0.2211 S13: -0.1014 REMARK 3 S21: 0.4389 S22: 0.1363 S23: 0.0792 REMARK 3 S31: -0.0160 S32: 0.0648 S33: 0.1238 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 115:226) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2898 -5.2106 27.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.5433 T22: 0.3331 REMARK 3 T33: 0.5208 T12: -0.0450 REMARK 3 T13: 0.2604 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.5671 L22: 0.1722 REMARK 3 L33: 2.6205 L12: -0.2823 REMARK 3 L13: 0.1975 L23: -0.1417 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.0399 S13: -0.2695 REMARK 3 S21: 0.0908 S22: -0.0487 S23: 0.0600 REMARK 3 S31: 0.5211 S32: -0.1065 S33: 0.2267 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36300 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 3D35 3DM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0% (V/V) PEG 8000 8% (V/V) ETHYLENE REMARK 280 GLYCOL 100 MM HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.77150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.77150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 TYR A 130 REMARK 465 LYS A 131 REMARK 465 LYS A 132 REMARK 465 ILE A 133 REMARK 465 ILE A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 PRO A 169 REMARK 465 ARG A 170 REMARK 465 PHE A 171 REMARK 465 ARG A 405 REMARK 465 GLU A 406 REMARK 465 ARG A 407 REMARK 465 ASN A 408 REMARK 465 GLN A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 PRO A 412 REMARK 465 ALA A 413 REMARK 465 SER A 414 REMARK 465 ASN A 415 REMARK 465 ILE A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 LEU A 419 REMARK 465 ALA A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 MET A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 PRO A 426 REMARK 465 ARG A 427 REMARK 465 LYS A 428 REMARK 465 LYS A 429 REMARK 465 ALA A 430 REMARK 465 LYS A 431 REMARK 465 ALA A 432 REMARK 465 LEU A 433 REMARK 465 PRO A 434 REMARK 465 LYS A 435 REMARK 465 THR A 436 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 131 REMARK 465 ASP B 132 REMARK 465 ASP B 133 REMARK 465 GLN B 134 REMARK 465 GLU B 135 REMARK 465 GLU B 227 REMARK 465 GLY B 228 REMARK 465 GLU B 229 REMARK 465 SER B 230 REMARK 465 GLY B 231 REMARK 465 LEU B 232 REMARK 465 ALA D 1 REMARK 465 ARG D 2 REMARK 465 THR D 3 REMARK 465 LYS D 4 REMARK 465 GLN D 5 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS D 14 C NH2 D 15 N -0.272 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS D 14 CA - C - N ANGL. DEV. = -17.6 DEGREES REMARK 500 LYS D 14 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 -20.32 70.31 REMARK 500 LYS A 37 -75.73 -50.87 REMARK 500 ASP A 38 70.51 -68.00 REMARK 500 PHE A 62 -10.09 -145.02 REMARK 500 ASP A 75 -150.21 -164.15 REMARK 500 GLU A 80 133.51 -175.96 REMARK 500 GLN A 121 -80.83 -53.20 REMARK 500 ILE A 127 116.92 -172.29 REMARK 500 PRO A 135 -144.35 -94.94 REMARK 500 GLU A 136 45.02 78.98 REMARK 500 ALA A 140 -37.77 -39.19 REMARK 500 THR A 143 156.11 -49.01 REMARK 500 SER A 160 -135.01 -122.58 REMARK 500 THR A 161 19.29 -144.63 REMARK 500 LEU A 163 -139.54 -121.73 REMARK 500 LEU A 175 95.68 -50.52 REMARK 500 TYR A 176 91.26 168.17 REMARK 500 LEU A 177 159.25 -45.78 REMARK 500 ARG A 194 95.34 -167.23 REMARK 500 ASP A 203 -8.30 70.51 REMARK 500 THR A 271 -76.91 -32.87 REMARK 500 SER A 272 103.63 45.13 REMARK 500 ASN A 275 79.32 56.09 REMARK 500 ASP A 301 79.57 48.36 REMARK 500 ARG A 302 2.43 -150.70 REMARK 500 GLU A 317 -151.67 -80.19 REMARK 500 GLN A 319 -135.02 35.16 REMARK 500 GLU A 320 -74.70 52.79 REMARK 500 SER A 333 104.59 -163.15 REMARK 500 SER A 341 83.20 -154.44 REMARK 500 LEU A 342 86.56 -155.96 REMARK 500 PRO A 352 150.01 -47.38 REMARK 500 ILE A 365 -61.68 -106.68 REMARK 500 LEU A 395 153.87 -46.70 REMARK 500 LYS A 401 51.23 -148.79 REMARK 500 ALA B 92 -16.16 -48.20 REMARK 500 SER B 95 129.17 97.94 REMARK 500 ASP B 115 -59.84 -146.49 REMARK 500 TRP B 185 138.66 -28.64 REMARK 500 PHE B 194 134.05 -39.23 REMARK 500 GLU B 207 -63.52 -128.58 REMARK 500 LEU B 223 119.17 80.41 REMARK 500 ASP B 225 94.60 -61.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 D 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF HISTONE H3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D35 RELATED DB: PDB REMARK 900 RTT109 (D130-179) BOUND WITH ACO REMARK 900 RELATED ID: 3DM7 RELATED DB: PDB REMARK 900 VPS75 (1-232) HOMODIMER STRUCTURE REMARK 900 RELATED ID: 3Q35 RELATED DB: PDB REMARK 900 RTT109-VPS75 COMPLEX BOUND WITH ACO DBREF 3Q33 A 1 436 UNP Q07794 RT109_YEAST 1 436 DBREF 3Q33 B 1 232 UNP P53853 VPS75_YEAST 1 232 DBREF 3Q33 D 1 14 UNP P61830 H3_YEAST 1 14 SEQADV 3Q33 GLY A -1 UNP A7A0Q4 EXPRESSION TAG SEQADV 3Q33 SER A 0 UNP A7A0Q4 EXPRESSION TAG SEQRES 1 A 438 GLY SER MET SER LEU ASN ASP PHE LEU SER SER VAL LEU SEQRES 2 A 438 PRO VAL SER GLU GLN PHE GLU TYR LEU SER LEU GLN SER SEQRES 3 A 438 ILE PRO LEU GLU THR HIS ALA VAL VAL THR PRO ASN LYS SEQRES 4 A 438 ASP ASP LYS ARG VAL PRO LYS SER THR ILE LYS THR GLN SEQRES 5 A 438 HIS PHE PHE SER LEU PHE HIS GLN GLY LYS VAL PHE PHE SEQRES 6 A 438 SER LEU GLU VAL TYR VAL TYR VAL THR LEU TRP ASP GLU SEQRES 7 A 438 ALA ASP ALA GLU ARG LEU ILE PHE VAL SER LYS ALA ASP SEQRES 8 A 438 THR ASN GLY TYR CYS ASN THR ARG VAL SER VAL ARG ASP SEQRES 9 A 438 ILE THR LYS ILE ILE LEU GLU PHE ILE LEU SER ILE ASP SEQRES 10 A 438 PRO ASN TYR TYR LEU GLN LYS VAL LYS PRO ALA ILE ARG SEQRES 11 A 438 SER TYR LYS LYS ILE SER PRO GLU LEU ILE SER ALA ALA SEQRES 12 A 438 SER THR PRO ALA ARG THR LEU ARG ILE LEU ALA ARG ARG SEQRES 13 A 438 LEU LYS GLN SER GLY SER THR VAL LEU LYS GLU ILE GLU SEQRES 14 A 438 SER PRO ARG PHE GLN GLN ASP LEU TYR LEU SER PHE THR SEQRES 15 A 438 CYS PRO ARG GLU ILE LEU THR LYS ILE CYS LEU PHE THR SEQRES 16 A 438 ARG PRO ALA SER GLN TYR LEU PHE PRO ASP SER SER LYS SEQRES 17 A 438 ASN SER LYS LYS HIS ILE LEU ASN GLY GLU GLU LEU MET SEQRES 18 A 438 LYS TRP TRP GLY PHE ILE LEU ASP ARG LEU LEU ILE GLU SEQRES 19 A 438 CYS PHE GLN ASN ASP THR GLN ALA LYS LEU ARG ILE PRO SEQRES 20 A 438 GLY GLU ASP PRO ALA ARG VAL ARG SER TYR LEU ARG GLY SEQRES 21 A 438 MET LYS TYR PRO LEU TRP GLN VAL GLY ASP ILE PHE THR SEQRES 22 A 438 SER LYS GLU ASN SER LEU ALA VAL TYR ASN ILE PRO LEU SEQRES 23 A 438 PHE PRO ASP ASP PRO ALY ALA ARG PHE ILE HIS GLN LEU SEQRES 24 A 438 ALA GLU GLU ASP ARG LEU LEU LYS VAL SER LEU SER SER SEQRES 25 A 438 PHE TRP ILE GLU LEU GLN GLU ARG GLN GLU PHE LYS LEU SEQRES 26 A 438 SER VAL THR SER SER VAL MET GLY ILE SER GLY TYR SER SEQRES 27 A 438 LEU ALA THR PRO SER LEU PHE PRO SER SER ALA ASP VAL SEQRES 28 A 438 ILE VAL PRO LYS SER ARG LYS GLN PHE ARG ALA ILE LYS SEQRES 29 A 438 LYS TYR ILE THR GLY GLU GLU TYR ASP THR GLU GLU GLY SEQRES 30 A 438 ALA ILE GLU ALA PHE THR ASN ILE ARG ASP PHE LEU LEU SEQRES 31 A 438 LEU ARG MET ALA THR ASN LEU GLN SER LEU THR GLY LYS SEQRES 32 A 438 ARG GLU HIS ARG GLU ARG ASN GLN PRO VAL PRO ALA SER SEQRES 33 A 438 ASN ILE ASN THR LEU ALA ILE THR MET LEU LYS PRO ARG SEQRES 34 A 438 LYS LYS ALA LYS ALA LEU PRO LYS THR SEQRES 1 B 232 MET MET SER ASP GLN GLU ASN GLU ASN GLU HIS ALA LYS SEQRES 2 B 232 ALA PHE LEU GLY LEU ALA LYS CYS GLU GLU GLU VAL ASP SEQRES 3 B 232 ALA ILE GLU ARG GLU VAL GLU LEU TYR ARG LEU ASN LYS SEQRES 4 B 232 MET LYS PRO VAL TYR GLU LYS ARG ASP ALA TYR ILE ASP SEQRES 5 B 232 GLU ILE ALA GLU PHE TRP LYS ILE VAL LEU SER GLN HIS SEQRES 6 B 232 VAL SER PHE ALA ASN TYR ILE ARG ALA SER ASP PHE LYS SEQRES 7 B 232 TYR ILE ASP THR ILE ASP LYS ILE LYS VAL GLU TRP LEU SEQRES 8 B 232 ALA LEU GLU SER GLU MET TYR ASP THR ARG ASP PHE SER SEQRES 9 B 232 ILE THR PHE HIS PHE HIS GLY ILE GLU GLY ASP PHE LYS SEQRES 10 B 232 GLU GLN GLN VAL THR LYS VAL PHE GLN ILE LYS LYS GLY SEQRES 11 B 232 LYS ASP ASP GLN GLU ASP GLY ILE LEU THR SER GLU PRO SEQRES 12 B 232 VAL PRO ILE GLU TRP PRO GLN SER TYR ASP SER ILE ASN SEQRES 13 B 232 PRO ASP LEU ILE LYS ASP LYS ARG SER PRO GLU GLY LYS SEQRES 14 B 232 LYS LYS TYR ARG GLN GLY MET LYS THR ILE PHE GLY TRP SEQRES 15 B 232 PHE ARG TRP THR GLY LEU LYS PRO GLY LYS GLU PHE PRO SEQRES 16 B 232 HIS GLY ASP SER LEU ALA SER LEU PHE SER GLU GLU ILE SEQRES 17 B 232 TYR PRO PHE CYS VAL LYS TYR TYR ALA GLU ALA GLN ARG SEQRES 18 B 232 ASP LEU GLU ASP GLU GLU GLY GLU SER GLY LEU SEQRES 1 D 15 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 15 LYS NH2 MODRES 3Q33 ALY A 290 LYS N(6)-ACETYLLYSINE HET ALY A 290 12 HET NH2 D 15 1 HET ACO A 501 51 HET EDO A 502 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM NH2 AMINO GROUP HETNAM ACO ACETYL COENZYME *A HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ALY C8 H16 N2 O3 FORMUL 3 NH2 H2 N FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *23(H2 O) HELIX 1 1 SER A 2 SER A 9 1 8 HELIX 2 2 SER A 99 ILE A 114 1 16 HELIX 3 3 ASP A 115 GLN A 121 5 7 HELIX 4 4 THR A 143 ARG A 154 1 12 HELIX 5 5 ASP A 203 ASN A 207 5 5 HELIX 6 6 ASN A 214 PHE A 234 1 21 HELIX 7 7 ASP A 248 ARG A 257 1 10 HELIX 8 8 LEU A 277 ASN A 281 5 5 HELIX 9 9 ASP A 288 GLU A 300 1 13 HELIX 10 10 SER A 307 GLU A 317 1 11 HELIX 11 11 SER A 354 GLY A 367 1 14 HELIX 12 12 THR A 372 ALA A 392 1 21 HELIX 13 13 GLU B 10 ILE B 54 1 45 HELIX 14 14 GLU B 56 HIS B 65 1 10 HELIX 15 15 VAL B 66 ILE B 72 5 7 HELIX 16 16 ARG B 73 SER B 75 5 3 HELIX 17 17 ASP B 76 ASP B 81 1 6 HELIX 18 18 ALA B 92 GLU B 94 5 3 HELIX 19 19 GLN B 150 SER B 154 5 5 HELIX 20 20 ASN B 156 ILE B 160 5 5 HELIX 21 21 SER B 165 MET B 176 1 12 HELIX 22 22 PHE B 180 ARG B 184 5 5 HELIX 23 23 HIS B 196 GLU B 207 1 12 HELIX 24 24 GLU B 207 GLN B 220 1 14 SHEET 1 A 8 LEU A 27 THR A 29 0 SHEET 2 A 8 SER A 45 PHE A 56 -1 O THR A 46 N THR A 29 SHEET 3 A 8 VAL A 61 LEU A 73 -1 O VAL A 71 N HIS A 51 SHEET 4 A 8 ALA A 79 THR A 90 -1 O PHE A 84 N TYR A 70 SHEET 5 A 8 LEU A 186 THR A 193 1 O LYS A 188 N ILE A 83 SHEET 6 A 8 SER A 328 GLY A 334 -1 O GLY A 334 N THR A 187 SHEET 7 A 8 GLN A 239 ARG A 243 -1 N GLN A 239 O SER A 345 SHEET 8 A 8 TRP A 264 VAL A 266 1 O GLN A 265 N ALA A 240 SHEET 1 B 4 LEU A 27 THR A 29 0 SHEET 2 B 4 SER A 45 PHE A 56 -1 O THR A 46 N THR A 29 SHEET 3 B 4 GLN A 16 GLN A 23 -1 N GLU A 18 O PHE A 56 SHEET 4 B 4 GLN A 396 THR A 399 -1 O LEU A 398 N PHE A 17 SHEET 1 C 4 ILE B 83 GLU B 89 0 SHEET 2 C 4 PHE B 103 PHE B 109 -1 O HIS B 108 N ASP B 84 SHEET 3 C 4 GLN B 119 LYS B 128 -1 O GLN B 119 N PHE B 109 SHEET 4 C 4 ILE B 138 SER B 154 -1 O THR B 140 N GLN B 126 LINK C PRO A 289 N ALY A 290 1555 1555 1.33 LINK C ALY A 290 N ALA A 291 1555 1555 1.33 SITE 1 AC1 3 GLY A 367 GLY D 13 LYS D 14 SITE 1 AC2 19 VAL A 85 SER A 86 ALA A 88 ASP A 89 SITE 2 AC2 19 THR A 90 VAL A 98 VAL A 100 ARG A 101 SITE 3 AC2 19 PHE A 192 PRO A 195 ALA A 196 TYR A 199 SITE 4 AC2 19 LYS A 210 HIS A 211 LEU A 213 LEU A 218 SITE 5 AC2 19 TRP A 221 TRP A 222 EDO A 502 SITE 1 AC3 5 SER A 86 PHE A 192 ARG A 194 TYR A 199 SITE 2 AC3 5 ACO A 501 SITE 1 AC4 9 LYS A 363 GLY A 367 GLU A 368 GLU A 369 SITE 2 AC4 9 ASN B 70 ILE B 72 HIS B 196 SER B 199 SITE 3 AC4 9 NH2 D 15 CRYST1 97.543 119.570 80.566 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010252 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012412 0.00000