HEADER TRANSFERASE/CHAPERONE 21-DEC-10 3Q35 TITLE STRUCTURE OF THE RTT109-ACCOA/VPS75 COMPLEX AND IMPLICATIONS FOR TITLE 2 CHAPERONE-MEDIATED HISTONE ACETYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATOR OF TY1 TRANSPOSITION PROTEIN 109; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 75; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 1-232; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: KIM2, L1377, REM50, RTT109, YLL002W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: 6HIS-TEV-PCDF-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: N0890, VPS75, YNL246W; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: GST-TEV-PRSF-DUET KEYWDS RTT109:VPS75=2:2 STOICHIOMETRY COMPLEX, ACETYL COENZYME A (ACOA) KEYWDS 2 BOUND, AUTOACETYLATION AT RTT109 LYS290, NUCLEAR, TRANSFERASE- KEYWDS 3 CHAPERONE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,H.YUAN,K.MEETH,R.MARMORSTEIN REVDAT 7 06-NOV-24 3Q35 1 REMARK REVDAT 6 06-DEC-23 3Q35 1 REMARK REVDAT 5 13-SEP-23 3Q35 1 REMARK SEQADV REVDAT 4 17-JUL-19 3Q35 1 REMARK LINK REVDAT 3 23-FEB-11 3Q35 1 JRNL REVDAT 2 16-FEB-11 3Q35 1 JRNL REVDAT 1 02-FEB-11 3Q35 0 JRNL AUTH Y.TANG,M.A.HOLBERT,N.DELGOSHAIE,H.WURTELE,B.GUILLEMETTE, JRNL AUTH 2 K.MEETH,H.YUAN,P.DROGARIS,E.H.LEE,C.DURETTE,P.THIBAULT, JRNL AUTH 3 A.VERREAULT,P.A.COLE,R.MARMORSTEIN JRNL TITL STRUCTURE OF THE RTT109-ACCOA/VPS75 COMPLEX AND IMPLICATIONS JRNL TITL 2 FOR CHAPERONE-MEDIATED HISTONE ACETYLATION. JRNL REF STRUCTURE V. 19 221 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21256037 JRNL DOI 10.1016/J.STR.2010.12.012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.TANG,M.A.HOLBERT,H.WURTELE,K.MEETH,W.ROCHA,M.GHARIB, REMARK 1 AUTH 2 E.JIANG,P.THIBAULT,A.VERREAULT,A.VERRAULT,P.A.COLE, REMARK 1 AUTH 3 R.MARMORSTEIN REMARK 1 TITL FUNGAL RTT109 HISTONE ACETYLTRANSFERASE IS AN UNEXPECTED REMARK 1 TITL 2 STRUCTURAL HOMOLOG OF METAZOAN P300/CBP. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 15 738 2008 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 18568037 REMARK 1 DOI 10.1038/NSMB.1448 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.TANG,K.MEETH,E.JIANG,C.LUO,R.MARMORSTEIN REMARK 1 TITL STRUCTURE OF VPS75 AND IMPLICATIONS FOR HISTONE CHAPERONE REMARK 1 TITL 2 FUNCTION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 105 12206 2008 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 18723682 REMARK 1 DOI 10.1073/PNAS.0802393105 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0154 - 5.6408 1.00 2947 141 0.1969 0.2329 REMARK 3 2 5.6408 - 4.4783 1.00 2796 136 0.1824 0.2022 REMARK 3 3 4.4783 - 3.9125 1.00 2780 148 0.2045 0.2662 REMARK 3 4 3.9125 - 3.5549 1.00 2746 151 0.2341 0.2782 REMARK 3 5 3.5549 - 3.3002 0.97 2627 159 0.2648 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 54.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 34.36590 REMARK 3 B22 (A**2) : -16.27660 REMARK 3 B33 (A**2) : -18.08930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5147 REMARK 3 ANGLE : 1.309 6956 REMARK 3 CHIRALITY : 0.082 754 REMARK 3 PLANARITY : 0.006 878 REMARK 3 DIHEDRAL : 23.634 3147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:127) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3495 19.2253 -0.2737 REMARK 3 T TENSOR REMARK 3 T11: 0.5543 T22: 0.7729 REMARK 3 T33: 0.7171 T12: 0.1112 REMARK 3 T13: 0.0289 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 2.8994 L22: 2.9023 REMARK 3 L33: 5.7088 L12: 0.6941 REMARK 3 L13: -2.2631 L23: -2.8812 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: 0.2757 S13: 0.3339 REMARK 3 S21: 0.3226 S22: 0.0194 S23: 0.2200 REMARK 3 S31: -0.5070 S32: -0.5715 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 128:176) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6811 29.7664 33.4424 REMARK 3 T TENSOR REMARK 3 T11: 1.8837 T22: 1.1268 REMARK 3 T33: 1.2291 T12: 0.1193 REMARK 3 T13: -0.1215 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: -0.1667 L22: 0.6653 REMARK 3 L33: 0.1246 L12: -0.2583 REMARK 3 L13: -0.0800 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: -0.4567 S12: 0.4285 S13: 0.4985 REMARK 3 S21: 0.6094 S22: 0.4744 S23: -0.5945 REMARK 3 S31: -2.2884 S32: -0.0147 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 177:269) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1832 14.5456 -11.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.6324 T22: 0.7289 REMARK 3 T33: 0.7544 T12: 0.0101 REMARK 3 T13: -0.0496 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 2.8244 L22: 2.9139 REMARK 3 L33: 5.7841 L12: -0.0248 REMARK 3 L13: -1.5572 L23: -2.8795 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: 0.2549 S13: -0.1312 REMARK 3 S21: -0.5014 S22: -0.1639 S23: -0.0385 REMARK 3 S31: 0.3752 S32: -0.3466 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 270:321) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4694 20.2964 -3.0528 REMARK 3 T TENSOR REMARK 3 T11: 1.0241 T22: 0.9273 REMARK 3 T33: 1.2266 T12: -0.1145 REMARK 3 T13: -0.0956 T23: 0.1555 REMARK 3 L TENSOR REMARK 3 L11: 2.1019 L22: 0.8296 REMARK 3 L33: 2.0249 L12: 0.0341 REMARK 3 L13: 0.2547 L23: 1.5705 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.1371 S13: 0.0021 REMARK 3 S21: 0.2210 S22: -0.1336 S23: -1.3763 REMARK 3 S31: -0.4955 S32: 0.6995 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 322:404) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1236 11.2677 4.4478 REMARK 3 T TENSOR REMARK 3 T11: 0.5984 T22: 0.8642 REMARK 3 T33: 0.8408 T12: 0.0329 REMARK 3 T13: 0.0358 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 2.6951 L22: 2.4702 REMARK 3 L33: 3.8354 L12: 1.0564 REMARK 3 L13: -2.7672 L23: -1.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.1500 S12: 0.1248 S13: 0.1129 REMARK 3 S21: 0.4233 S22: -0.1103 S23: 0.5129 REMARK 3 S31: 0.0626 S32: -0.4783 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 9:114) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3569 -1.6527 39.7258 REMARK 3 T TENSOR REMARK 3 T11: 1.1727 T22: 0.8401 REMARK 3 T33: 0.8713 T12: 0.0301 REMARK 3 T13: 0.1509 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 1.8128 L22: 0.5060 REMARK 3 L33: 1.5707 L12: -1.0868 REMARK 3 L13: 0.7171 L23: -0.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.1954 S12: -0.3415 S13: -0.2882 REMARK 3 S21: 0.4744 S22: 0.1553 S23: 0.0295 REMARK 3 S31: 0.1222 S32: -0.0450 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 115:226) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3354 -4.9736 27.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.9280 T22: 0.7305 REMARK 3 T33: 0.8884 T12: -0.0235 REMARK 3 T13: 0.2588 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.1834 L22: 3.0791 REMARK 3 L33: 5.9945 L12: 0.8499 REMARK 3 L13: 1.5620 L23: 2.0267 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.1238 S13: -0.1807 REMARK 3 S21: -0.1581 S22: -0.1084 S23: 0.3437 REMARK 3 S31: 0.3463 S32: -0.2293 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15302 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3Q33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0% (V/V) PEG8000; 8% (V/V) ETHYLENE REMARK 280 GLYCOL; 100 MM HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.04250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.50050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.04250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.50050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 TYR A 130 REMARK 465 LYS A 131 REMARK 465 LYS A 132 REMARK 465 ILE A 133 REMARK 465 ILE A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 PRO A 169 REMARK 465 ARG A 170 REMARK 465 PHE A 171 REMARK 465 ARG A 405 REMARK 465 GLU A 406 REMARK 465 ARG A 407 REMARK 465 ASN A 408 REMARK 465 GLN A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 PRO A 412 REMARK 465 ALA A 413 REMARK 465 SER A 414 REMARK 465 ASN A 415 REMARK 465 ILE A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 LEU A 419 REMARK 465 ALA A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 MET A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 PRO A 426 REMARK 465 ARG A 427 REMARK 465 LYS A 428 REMARK 465 LYS A 429 REMARK 465 ALA A 430 REMARK 465 LYS A 431 REMARK 465 ALA A 432 REMARK 465 LEU A 433 REMARK 465 PRO A 434 REMARK 465 LYS A 435 REMARK 465 THR A 436 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 131 REMARK 465 ASP B 132 REMARK 465 ASP B 133 REMARK 465 GLN B 134 REMARK 465 GLU B 135 REMARK 465 GLU B 227 REMARK 465 GLY B 228 REMARK 465 GLU B 229 REMARK 465 SER B 230 REMARK 465 GLY B 231 REMARK 465 LEU B 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 -24.03 70.51 REMARK 500 LYS A 37 -83.08 -47.25 REMARK 500 ASP A 38 64.66 -56.25 REMARK 500 PHE A 62 -3.68 -146.72 REMARK 500 ASP A 75 -160.66 -174.65 REMARK 500 ALA A 77 12.61 -147.12 REMARK 500 GLU A 80 129.29 -175.85 REMARK 500 GLN A 121 -93.17 -48.68 REMARK 500 ILE A 127 106.47 -170.12 REMARK 500 PRO A 135 -134.30 -95.55 REMARK 500 ALA A 141 68.09 -106.00 REMARK 500 SER A 160 -160.85 -118.54 REMARK 500 LEU A 175 108.86 -44.09 REMARK 500 TYR A 176 99.02 159.09 REMARK 500 ASP A 203 -5.36 60.74 REMARK 500 LYS A 209 -2.28 -58.15 REMARK 500 THR A 271 -79.43 -40.65 REMARK 500 SER A 272 94.12 47.74 REMARK 500 ASN A 275 81.82 47.30 REMARK 500 GLU A 299 -70.94 -65.03 REMARK 500 GLU A 300 14.44 -65.80 REMARK 500 ASP A 301 77.42 40.38 REMARK 500 ARG A 302 12.38 -140.34 REMARK 500 LEU A 304 33.31 -97.95 REMARK 500 GLU A 317 -149.65 -77.64 REMARK 500 GLN A 319 -129.12 41.03 REMARK 500 GLU A 320 -74.39 38.67 REMARK 500 SER A 333 102.52 -166.19 REMARK 500 LEU A 337 -71.03 -51.35 REMARK 500 SER A 341 63.48 -169.02 REMARK 500 ILE A 365 -70.75 -109.52 REMARK 500 GLU A 373 -8.47 -47.12 REMARK 500 LEU A 389 -70.10 -54.11 REMARK 500 LYS B 46 -70.67 -55.03 REMARK 500 ARG B 73 150.67 -49.54 REMARK 500 ALA B 92 -7.35 -59.44 REMARK 500 SER B 95 122.09 107.43 REMARK 500 GLU B 96 9.32 -57.19 REMARK 500 ASP B 115 -48.15 -155.76 REMARK 500 TYR B 152 32.13 -70.30 REMARK 500 ILE B 155 30.62 -98.20 REMARK 500 ASP B 158 32.94 -83.38 REMARK 500 LYS B 189 59.23 -118.07 REMARK 500 GLU B 193 -157.02 -101.56 REMARK 500 GLU B 207 -59.67 -137.22 REMARK 500 CYS B 212 -27.14 -36.17 REMARK 500 LYS B 214 -36.94 -39.76 REMARK 500 GLN B 220 33.61 -81.07 REMARK 500 LEU B 223 118.50 92.07 REMARK 500 GLU B 224 -51.34 -29.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 437 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D35 RELATED DB: PDB REMARK 900 RTT109 D(130-179) BOUND WITH ACO REMARK 900 RELATED ID: 3DM7 RELATED DB: PDB REMARK 900 VPS75 (1-232) HOMODIMER STRUCTURE REMARK 900 RELATED ID: 3Q33 RELATED DB: PDB REMARK 900 RTT109-VPS75 COMPLEX BOUND WITH ACO AND SOAKED WITH H3K9 PEPTIDE DBREF 3Q35 A 1 436 UNP Q07794 RT109_YEAST 1 436 DBREF 3Q35 B 1 232 UNP P53853 VPS75_YEAST 1 232 SEQADV 3Q35 GLY A -1 UNP Q07794 EXPRESSION TAG SEQADV 3Q35 SER A 0 UNP Q07794 EXPRESSION TAG SEQRES 1 A 438 GLY SER MET SER LEU ASN ASP PHE LEU SER SER VAL LEU SEQRES 2 A 438 PRO VAL SER GLU GLN PHE GLU TYR LEU SER LEU GLN SER SEQRES 3 A 438 ILE PRO LEU GLU THR HIS ALA VAL VAL THR PRO ASN LYS SEQRES 4 A 438 ASP ASP LYS ARG VAL PRO LYS SER THR ILE LYS THR GLN SEQRES 5 A 438 HIS PHE PHE SER LEU PHE HIS GLN GLY LYS VAL PHE PHE SEQRES 6 A 438 SER LEU GLU VAL TYR VAL TYR VAL THR LEU TRP ASP GLU SEQRES 7 A 438 ALA ASP ALA GLU ARG LEU ILE PHE VAL SER LYS ALA ASP SEQRES 8 A 438 THR ASN GLY TYR CYS ASN THR ARG VAL SER VAL ARG ASP SEQRES 9 A 438 ILE THR LYS ILE ILE LEU GLU PHE ILE LEU SER ILE ASP SEQRES 10 A 438 PRO ASN TYR TYR LEU GLN LYS VAL LYS PRO ALA ILE ARG SEQRES 11 A 438 SER TYR LYS LYS ILE SER PRO GLU LEU ILE SER ALA ALA SEQRES 12 A 438 SER THR PRO ALA ARG THR LEU ARG ILE LEU ALA ARG ARG SEQRES 13 A 438 LEU LYS GLN SER GLY SER THR VAL LEU LYS GLU ILE GLU SEQRES 14 A 438 SER PRO ARG PHE GLN GLN ASP LEU TYR LEU SER PHE THR SEQRES 15 A 438 CYS PRO ARG GLU ILE LEU THR LYS ILE CYS LEU PHE THR SEQRES 16 A 438 ARG PRO ALA SER GLN TYR LEU PHE PRO ASP SER SER LYS SEQRES 17 A 438 ASN SER LYS LYS HIS ILE LEU ASN GLY GLU GLU LEU MET SEQRES 18 A 438 LYS TRP TRP GLY PHE ILE LEU ASP ARG LEU LEU ILE GLU SEQRES 19 A 438 CYS PHE GLN ASN ASP THR GLN ALA LYS LEU ARG ILE PRO SEQRES 20 A 438 GLY GLU ASP PRO ALA ARG VAL ARG SER TYR LEU ARG GLY SEQRES 21 A 438 MET LYS TYR PRO LEU TRP GLN VAL GLY ASP ILE PHE THR SEQRES 22 A 438 SER LYS GLU ASN SER LEU ALA VAL TYR ASN ILE PRO LEU SEQRES 23 A 438 PHE PRO ASP ASP PRO ALY ALA ARG PHE ILE HIS GLN LEU SEQRES 24 A 438 ALA GLU GLU ASP ARG LEU LEU LYS VAL SER LEU SER SER SEQRES 25 A 438 PHE TRP ILE GLU LEU GLN GLU ARG GLN GLU PHE LYS LEU SEQRES 26 A 438 SER VAL THR SER SER VAL MET GLY ILE SER GLY TYR SER SEQRES 27 A 438 LEU ALA THR PRO SER LEU PHE PRO SER SER ALA ASP VAL SEQRES 28 A 438 ILE VAL PRO LYS SER ARG LYS GLN PHE ARG ALA ILE LYS SEQRES 29 A 438 LYS TYR ILE THR GLY GLU GLU TYR ASP THR GLU GLU GLY SEQRES 30 A 438 ALA ILE GLU ALA PHE THR ASN ILE ARG ASP PHE LEU LEU SEQRES 31 A 438 LEU ARG MET ALA THR ASN LEU GLN SER LEU THR GLY LYS SEQRES 32 A 438 ARG GLU HIS ARG GLU ARG ASN GLN PRO VAL PRO ALA SER SEQRES 33 A 438 ASN ILE ASN THR LEU ALA ILE THR MET LEU LYS PRO ARG SEQRES 34 A 438 LYS LYS ALA LYS ALA LEU PRO LYS THR SEQRES 1 B 232 MET MET SER ASP GLN GLU ASN GLU ASN GLU HIS ALA LYS SEQRES 2 B 232 ALA PHE LEU GLY LEU ALA LYS CYS GLU GLU GLU VAL ASP SEQRES 3 B 232 ALA ILE GLU ARG GLU VAL GLU LEU TYR ARG LEU ASN LYS SEQRES 4 B 232 MET LYS PRO VAL TYR GLU LYS ARG ASP ALA TYR ILE ASP SEQRES 5 B 232 GLU ILE ALA GLU PHE TRP LYS ILE VAL LEU SER GLN HIS SEQRES 6 B 232 VAL SER PHE ALA ASN TYR ILE ARG ALA SER ASP PHE LYS SEQRES 7 B 232 TYR ILE ASP THR ILE ASP LYS ILE LYS VAL GLU TRP LEU SEQRES 8 B 232 ALA LEU GLU SER GLU MET TYR ASP THR ARG ASP PHE SER SEQRES 9 B 232 ILE THR PHE HIS PHE HIS GLY ILE GLU GLY ASP PHE LYS SEQRES 10 B 232 GLU GLN GLN VAL THR LYS VAL PHE GLN ILE LYS LYS GLY SEQRES 11 B 232 LYS ASP ASP GLN GLU ASP GLY ILE LEU THR SER GLU PRO SEQRES 12 B 232 VAL PRO ILE GLU TRP PRO GLN SER TYR ASP SER ILE ASN SEQRES 13 B 232 PRO ASP LEU ILE LYS ASP LYS ARG SER PRO GLU GLY LYS SEQRES 14 B 232 LYS LYS TYR ARG GLN GLY MET LYS THR ILE PHE GLY TRP SEQRES 15 B 232 PHE ARG TRP THR GLY LEU LYS PRO GLY LYS GLU PHE PRO SEQRES 16 B 232 HIS GLY ASP SER LEU ALA SER LEU PHE SER GLU GLU ILE SEQRES 17 B 232 TYR PRO PHE CYS VAL LYS TYR TYR ALA GLU ALA GLN ARG SEQRES 18 B 232 ASP LEU GLU ASP GLU GLU GLY GLU SER GLY LEU MODRES 3Q35 ALY A 290 LYS N(6)-ACETYLLYSINE HET ALY A 290 12 HET ACO A 999 51 HET EDO A 437 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ACO ACETYL COENZYME *A HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ALY C8 H16 N2 O3 FORMUL 3 ACO C23 H38 N7 O17 P3 S FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *11(H2 O) HELIX 1 1 SER A 2 SER A 9 1 8 HELIX 2 2 SER A 99 ILE A 114 1 16 HELIX 3 3 ASN A 117 GLN A 121 5 5 HELIX 4 4 THR A 143 SER A 158 1 16 HELIX 5 5 ASP A 203 ASN A 207 5 5 HELIX 6 6 ASN A 214 CYS A 233 1 20 HELIX 7 7 ASP A 248 ARG A 257 1 10 HELIX 8 8 LEU A 277 ASN A 281 5 5 HELIX 9 9 ASP A 288 GLU A 300 1 13 HELIX 10 10 SER A 307 GLU A 317 1 11 HELIX 11 11 SER A 354 GLY A 367 1 14 HELIX 12 12 THR A 372 ALA A 392 1 21 HELIX 13 13 ASN B 9 ASP B 52 1 44 HELIX 14 14 GLU B 56 HIS B 65 1 10 HELIX 15 15 VAL B 66 TYR B 71 5 6 HELIX 16 16 ARG B 73 SER B 75 5 3 HELIX 17 17 ASP B 76 ASP B 81 1 6 HELIX 18 18 ALA B 92 GLU B 94 5 3 HELIX 19 19 GLN B 150 SER B 154 5 5 HELIX 20 20 ASN B 156 ILE B 160 5 5 HELIX 21 21 SER B 165 MET B 176 1 12 HELIX 22 22 LYS B 177 THR B 178 5 2 HELIX 23 23 ILE B 179 PHE B 183 5 5 HELIX 24 24 HIS B 196 GLU B 207 1 12 HELIX 25 25 GLU B 207 GLN B 220 1 14 SHEET 1 A 8 LEU A 27 THR A 29 0 SHEET 2 A 8 SER A 45 PHE A 56 -1 O THR A 46 N THR A 29 SHEET 3 A 8 VAL A 61 LEU A 73 -1 O VAL A 67 N HIS A 51 SHEET 4 A 8 ALA A 79 THR A 90 -1 O LYS A 87 N GLU A 66 SHEET 5 A 8 LEU A 186 THR A 193 1 O LYS A 188 N ILE A 83 SHEET 6 A 8 SER A 328 GLY A 334 -1 O SER A 328 N THR A 193 SHEET 7 A 8 GLN A 239 ARG A 243 -1 N ARG A 243 O VAL A 329 SHEET 8 A 8 GLN A 265 VAL A 266 1 O GLN A 265 N ALA A 240 SHEET 1 B 4 LEU A 27 THR A 29 0 SHEET 2 B 4 SER A 45 PHE A 56 -1 O THR A 46 N THR A 29 SHEET 3 B 4 GLN A 16 GLN A 23 -1 N GLU A 18 O PHE A 56 SHEET 4 B 4 GLN A 396 THR A 399 -1 O LEU A 398 N PHE A 17 SHEET 1 C 4 ILE B 83 TRP B 90 0 SHEET 2 C 4 PHE B 103 PHE B 109 -1 O SER B 104 N GLU B 89 SHEET 3 C 4 GLN B 119 LYS B 128 -1 O VAL B 121 N PHE B 107 SHEET 4 C 4 ILE B 138 SER B 141 -1 O ILE B 138 N LYS B 128 LINK C PRO A 289 N ALY A 290 1555 1555 1.34 LINK C ALY A 290 N ALA A 291 1555 1555 1.33 SITE 1 AC1 19 VAL A 85 SER A 86 ALA A 88 ASP A 89 SITE 2 AC1 19 THR A 90 VAL A 98 VAL A 100 ARG A 101 SITE 3 AC1 19 PHE A 192 ARG A 194 PRO A 195 ALA A 196 SITE 4 AC1 19 TYR A 199 LYS A 210 HIS A 211 LEU A 213 SITE 5 AC1 19 TRP A 221 TRP A 222 EDO A 437 SITE 1 AC2 5 SER A 86 PHE A 192 ARG A 194 TYR A 199 SITE 2 AC2 5 ACO A 999 CRYST1 98.085 119.001 80.292 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012455 0.00000