HEADER VIRAL PROTEIN 21-DEC-10 3Q3A TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN TITLE 2 COMPLEX WITH HBGA TYPE H2 (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 224-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: VIETNAM 026; SOURCE 5 GENE: CAPSID PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, P-DOMAIN, CAPSID, RECEPTOR, HISTO BLOOD GROUP ANTIGEN KEYWDS 2 (HBGA), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,C.BIERTUMPFEL,L.CHEN,I.GEORGIEV,J.S.MCLELLAN,K.KATAYAMA, AUTHOR 2 P.D.KWONG REVDAT 4 13-SEP-23 3Q3A 1 HETSYN REVDAT 3 29-JUL-20 3Q3A 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 02-NOV-11 3Q3A 1 JRNL VERSN REVDAT 1 11-MAY-11 3Q3A 0 JRNL AUTH G.S.HANSMAN,C.BIERTUMPFEL,I.GEORGIEV,J.S.MCLELLAN,L.CHEN, JRNL AUTH 2 T.ZHOU,K.KATAYAMA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF GII.10 AND GII.12 NOROVIRUS PROTRUDING JRNL TITL 2 DOMAINS IN COMPLEX WITH HISTO-BLOOD GROUP ANTIGENS REVEAL JRNL TITL 3 DETAILS FOR A POTENTIAL SITE OF VULNERABILITY. JRNL REF J.VIROL. V. 85 6687 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21525337 JRNL DOI 10.1128/JVI.00246-11 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 135108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 6863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1769 - 4.3450 0.99 4386 210 0.1610 0.1704 REMARK 3 2 4.3450 - 3.4507 1.00 4305 240 0.1469 0.1544 REMARK 3 3 3.4507 - 3.0151 1.00 4326 217 0.1619 0.1979 REMARK 3 4 3.0151 - 2.7397 1.00 4309 214 0.1654 0.1797 REMARK 3 5 2.7397 - 2.5435 1.00 4276 220 0.1681 0.1866 REMARK 3 6 2.5435 - 2.3936 1.00 4326 213 0.1577 0.1682 REMARK 3 7 2.3936 - 2.2738 1.00 4257 262 0.1513 0.1660 REMARK 3 8 2.2738 - 2.1748 1.00 4251 241 0.1586 0.1736 REMARK 3 9 2.1748 - 2.0911 1.00 4281 219 0.1591 0.1806 REMARK 3 10 2.0911 - 2.0190 1.00 4311 208 0.1563 0.1732 REMARK 3 11 2.0190 - 1.9559 1.00 4307 220 0.1561 0.1879 REMARK 3 12 1.9559 - 1.9000 1.00 4230 245 0.1564 0.1707 REMARK 3 13 1.9000 - 1.8500 1.00 4270 233 0.1588 0.1941 REMARK 3 14 1.8500 - 1.8048 1.00 4274 228 0.1563 0.1630 REMARK 3 15 1.8048 - 1.7638 1.00 4292 224 0.1635 0.1955 REMARK 3 16 1.7638 - 1.7263 1.00 4281 211 0.1711 0.2134 REMARK 3 17 1.7263 - 1.6918 1.00 4271 221 0.1738 0.1848 REMARK 3 18 1.6918 - 1.6598 1.00 4291 230 0.1772 0.1869 REMARK 3 19 1.6598 - 1.6302 1.00 4251 241 0.1849 0.2072 REMARK 3 20 1.6302 - 1.6026 1.00 4247 232 0.1958 0.2313 REMARK 3 21 1.6026 - 1.5767 1.00 4289 222 0.1936 0.2458 REMARK 3 22 1.5767 - 1.5525 1.00 4263 228 0.2018 0.2237 REMARK 3 23 1.5525 - 1.5296 1.00 4273 216 0.2126 0.2339 REMARK 3 24 1.5296 - 1.5081 1.00 4298 224 0.2186 0.2448 REMARK 3 25 1.5081 - 1.4877 1.00 4205 255 0.2277 0.2449 REMARK 3 26 1.4877 - 1.4684 1.00 4262 237 0.2339 0.2645 REMARK 3 27 1.4684 - 1.4500 1.00 4268 238 0.2437 0.2633 REMARK 3 28 1.4500 - 1.4326 1.00 4276 219 0.2552 0.2787 REMARK 3 29 1.4326 - 1.4159 1.00 4207 250 0.2576 0.2803 REMARK 3 30 1.4159 - 1.4000 1.00 4264 245 0.2714 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10270 REMARK 3 B22 (A**2) : -1.35170 REMARK 3 B33 (A**2) : 1.45440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.72160 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5155 REMARK 3 ANGLE : 1.244 7015 REMARK 3 CHIRALITY : 0.087 781 REMARK 3 PLANARITY : 0.007 922 REMARK 3 DIHEDRAL : 15.061 1856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 224:307) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4523 8.2861 10.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0269 REMARK 3 T33: 0.0070 T12: -0.0066 REMARK 3 T13: 0.0095 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1304 L22: 0.2628 REMARK 3 L33: 0.3246 L12: -0.0550 REMARK 3 L13: 0.1254 L23: 0.0239 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0544 S13: 0.0189 REMARK 3 S21: -0.0599 S22: 0.0214 S23: 0.0296 REMARK 3 S31: -0.0959 S32: 0.0667 S33: -0.0139 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 308:432) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9116 14.2810 19.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0552 REMARK 3 T33: 0.0636 T12: 0.0106 REMARK 3 T13: 0.0055 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5038 L22: 0.8516 REMARK 3 L33: 0.7939 L12: 0.0588 REMARK 3 L13: -0.0484 L23: -0.3620 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0291 S13: 0.0649 REMARK 3 S21: 0.0876 S22: 0.0541 S23: 0.0245 REMARK 3 S31: -0.2025 S32: -0.0261 S33: -0.0374 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 433:538) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9142 -1.3125 -4.4304 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1024 REMARK 3 T33: -0.0434 T12: -0.0229 REMARK 3 T13: 0.0381 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.5041 L22: 0.7092 REMARK 3 L33: 0.0377 L12: 0.1288 REMARK 3 L13: 0.1222 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.1655 S13: -0.0513 REMARK 3 S21: -0.3073 S22: 0.0700 S23: 0.0013 REMARK 3 S31: -0.0534 S32: 0.0472 S33: -0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 224:300) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1970 -5.1206 23.5308 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0299 REMARK 3 T33: 0.0790 T12: -0.0001 REMARK 3 T13: -0.0186 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3742 L22: 0.4904 REMARK 3 L33: 0.2367 L12: 0.1788 REMARK 3 L13: 0.2914 L23: 0.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0735 S13: -0.0944 REMARK 3 S21: 0.0478 S22: 0.0138 S23: -0.1474 REMARK 3 S31: 0.0305 S32: 0.0724 S33: -0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 301:434) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4241 -11.8426 27.2449 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0067 REMARK 3 T33: 0.0604 T12: -0.0048 REMARK 3 T13: -0.0232 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.6303 L22: 0.5833 REMARK 3 L33: 0.4957 L12: -0.1557 REMARK 3 L13: 0.2666 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0375 S13: -0.1913 REMARK 3 S21: 0.0619 S22: 0.0419 S23: -0.0070 REMARK 3 S31: 0.0983 S32: -0.0411 S33: -0.0782 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 435:538) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9276 3.1929 22.4811 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.1465 REMARK 3 T33: 0.2353 T12: -0.0078 REMARK 3 T13: -0.0156 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.1793 L22: 1.0393 REMARK 3 L33: 0.6676 L12: 0.2849 REMARK 3 L13: 0.3189 L23: 0.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.1400 S13: -0.1673 REMARK 3 S21: 0.0379 S22: 0.0828 S23: -0.4318 REMARK 3 S31: -0.0346 S32: 0.1722 S33: -0.0941 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN L) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4618 4.8950 39.9479 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.2085 REMARK 3 T33: 0.1482 T12: -0.0534 REMARK 3 T13: -0.0234 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.8657 L22: 1.1258 REMARK 3 L33: 0.1981 L12: 0.9540 REMARK 3 L13: 0.2737 L23: 0.2106 REMARK 3 S TENSOR REMARK 3 S11: 0.2031 S12: -0.2264 S13: -0.0588 REMARK 3 S21: 0.1048 S22: 0.0752 S23: 0.0739 REMARK 3 S31: 0.2190 S32: -0.5021 S33: -0.2779 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 21.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.69 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67200 REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.1.4) REMARK 200 STARTING MODEL: PDB ENTRY 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 8.25% (W/V) PEG 8000, REMARK 280 1% (V/V) MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.55200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT IS ALSO BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 PRO A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 GLY B 220 REMARK 465 PRO B 221 REMARK 465 GLY B 222 REMARK 465 SER B 223 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 345 OG1 CG2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 341 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 76.06 -156.40 REMARK 500 GLN A 260 48.31 -149.60 REMARK 500 THR A 291 -69.22 -92.85 REMARK 500 GLN A 384 -20.95 -148.42 REMARK 500 VAL A 529 -150.30 -121.89 REMARK 500 ASN B 252 76.61 -151.96 REMARK 500 GLN B 260 46.60 -149.83 REMARK 500 ALA B 323 170.72 179.34 REMARK 500 GLN B 384 -30.72 -139.27 REMARK 500 VAL B 529 -158.77 -129.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R6J RELATED DB: PDB REMARK 900 RELATED ID: 3R6K RELATED DB: PDB REMARK 900 RELATED ID: 3PA1 RELATED DB: PDB REMARK 900 RELATED ID: 3PA2 RELATED DB: PDB REMARK 900 RELATED ID: 3Q38 RELATED DB: PDB REMARK 900 RELATED ID: 3Q39 RELATED DB: PDB REMARK 900 RELATED ID: 3Q6Q RELATED DB: PDB REMARK 900 RELATED ID: 3Q6R RELATED DB: PDB REMARK 900 RELATED ID: 3ONY RELATED DB: PDB REMARK 900 RELATED ID: 3ONU RELATED DB: PDB DBREF 3Q3A A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 3Q3A B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQADV 3Q3A GLY A 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A PRO A 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY A 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A SER A 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY B 220 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A PRO B 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A GLY B 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3Q3A SER B 223 UNP Q5F4T5 EXPRESSION TAG SEQRES 1 A 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 A 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 A 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 A 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 A 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 A 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 A 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 A 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 A 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 A 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 A 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 A 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 A 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 A 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 A 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 A 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 A 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 A 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 A 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 A 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 A 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 A 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 A 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 A 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 A 319 PHE TYR THR LEU ALA PRO MET SEQRES 1 B 319 GLY PRO GLY SER SER LYS PRO PHE THR LEU PRO ILE LEU SEQRES 2 B 319 THR LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO SEQRES 3 B 319 ILE ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE SEQRES 4 B 319 VAL GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU SEQRES 5 B 319 LEU GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS SEQRES 6 B 319 ALA PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU SEQRES 7 B 319 HIS ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU SEQRES 8 B 319 ASN GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA SEQRES 9 B 319 PRO LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY SEQRES 10 B 319 VAL ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU SEQRES 11 B 319 GLY ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE SEQRES 12 B 319 ALA THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN SEQRES 13 B 319 ILE GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER SEQRES 14 B 319 GLY GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER SEQRES 15 B 319 VAL ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SEQRES 16 B 319 SER TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA SEQRES 17 B 319 PRO SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU SEQRES 18 B 319 PHE PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY SEQRES 19 B 319 ASN PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL SEQRES 20 B 319 GLN HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP SEQRES 21 B 319 VAL ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG SEQRES 22 B 319 THR LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU SEQRES 23 B 319 THR VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO SEQRES 24 B 319 THR ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 25 B 319 PHE TYR THR LEU ALA PRO MET HET NAG C 1 15 HET GAL C 2 11 HET FUL C 3 10 HET IMD A 854 5 HET IMD A 855 5 HET IMD A 4 5 HET EDO A 6 4 HET EDO A 8 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET EDO A 16 4 HET EDO A 22 4 HET EDO A 23 8 HET EDO A 26 4 HET IMD B 3 5 HET IMD B 5 5 HET EDO B 7 4 HET EDO B 9 4 HET EDO B 10 4 HET EDO B 15 4 HET EDO B 17 4 HET EDO B 18 4 HET EDO B 19 4 HET EDO B 20 4 HET EDO B 21 4 HET EDO B 24 4 HET EDO B 25 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUL C6 H12 O5 FORMUL 4 IMD 5(C3 H5 N2 1+) FORMUL 7 EDO 21(C2 H6 O2) FORMUL 30 HOH *748(H2 O) HELIX 1 1 THR A 233 LEU A 237 5 5 HELIX 2 2 LEU A 279 ILE A 283 5 5 HELIX 3 3 VAL A 346 GLY A 350 5 5 HELIX 4 4 THR A 370 LEU A 373 5 4 HELIX 5 5 ASP A 403 HIS A 407 5 5 HELIX 6 6 PRO A 462 SER A 473 1 12 HELIX 7 7 THR B 233 LEU B 237 5 5 HELIX 8 8 LEU B 279 ILE B 283 5 5 HELIX 9 9 THR B 370 LEU B 373 5 4 HELIX 10 10 ASP B 403 HIS B 407 5 5 HELIX 11 11 PRO B 462 SER B 473 1 12 SHEET 1 A 4 ALA A 456 CYS A 459 0 SHEET 2 A 4 GLU A 437 PHE A 445 -1 N PHE A 442 O CYS A 459 SHEET 3 A 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 A 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 B 6 ALA A 456 CYS A 459 0 SHEET 2 B 6 GLU A 437 PHE A 445 -1 N PHE A 442 O CYS A 459 SHEET 3 B 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 B 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 B 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 B 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 C 8 GLY B 450 TYR B 452 0 SHEET 2 C 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 C 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 C 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 C 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 C 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 C 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 C 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 D 8 GLY A 450 TYR A 452 0 SHEET 2 D 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 D 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 D 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 D 8 PHE B 286 GLN B 295 -1 N LYS B 289 O THR B 306 SHEET 6 D 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 D 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 D 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 E 4 ALA B 456 CYS B 459 0 SHEET 2 E 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 E 4 VAL B 248 THR B 251 -1 N VAL B 248 O ARG B 443 SHEET 4 E 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 F 6 ALA B 456 CYS B 459 0 SHEET 2 F 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 F 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 F 6 ARG B 492 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 F 6 VAL B 480 ASN B 487 -1 N ALA B 481 O LEU B 499 SHEET 6 F 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.43 LINK O2 GAL C 2 C1 FUL C 3 1555 1555 1.43 CRYST1 65.168 79.104 68.912 90.00 99.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015345 0.000000 0.002579 0.00000 SCALE2 0.000000 0.012642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014715 0.00000