HEADER OXIDOREDUCTASE 21-DEC-10 3Q3C TITLE CRYSTAL STRUCTURE OF A SERINE DEHYDROGENASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PAO1 IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.276; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: PA0743; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, ALPHA-BETA FOLD, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,A.U.SINGER,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.M.EDWARDS, AUTHOR 2 A.JOACHIMIAK,A.F.YAKUNIN,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 4 30-OCT-24 3Q3C 1 REMARK SEQADV LINK REVDAT 3 01-FEB-12 3Q3C 1 JRNL REVDAT 2 23-NOV-11 3Q3C 1 JRNL VERSN REVDAT 1 23-FEB-11 3Q3C 0 JRNL AUTH A.TCHIGVINTSEV,A.SINGER,G.BROWN,R.FLICK,E.EVDOKIMOVA,K.TAN, JRNL AUTH 2 C.F.GONZALEZ,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF UNCHARACTERIZED JRNL TITL 2 PROTEIN PA0743 FROM PSEUDOMONAS AERUGINOSA REVEALED JRNL TITL 3 NAD+-DEPENDENT L-SERINE DEHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 287 1874 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22128181 JRNL DOI 10.1074/JBC.M111.294561 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3955 - 3.9305 0.99 3009 137 0.1559 0.2124 REMARK 3 2 3.9305 - 3.1203 1.00 2850 138 0.1922 0.2536 REMARK 3 3 3.1203 - 2.7260 1.00 2751 168 0.2425 0.3285 REMARK 3 4 2.7260 - 2.4768 1.00 2771 159 0.2456 0.3309 REMARK 3 5 2.4768 - 2.2993 0.96 2635 148 0.2630 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 41.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50040 REMARK 3 B22 (A**2) : -1.50040 REMARK 3 B33 (A**2) : 3.00080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2207 REMARK 3 ANGLE : 1.328 2998 REMARK 3 CHIRALITY : 0.080 344 REMARK 3 PLANARITY : 0.004 389 REMARK 3 DIHEDRAL : 19.403 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:37) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4946 27.0136 -6.4229 REMARK 3 T TENSOR REMARK 3 T11: 0.6528 T22: 0.4235 REMARK 3 T33: 0.3148 T12: -0.2713 REMARK 3 T13: 0.1392 T23: -0.1045 REMARK 3 L TENSOR REMARK 3 L11: 3.8271 L22: 2.8130 REMARK 3 L33: 2.6779 L12: -1.1361 REMARK 3 L13: -2.7799 L23: 1.9222 REMARK 3 S TENSOR REMARK 3 S11: -1.2920 S12: 0.8161 S13: -0.5479 REMARK 3 S21: 0.7527 S22: 0.4856 S23: -0.1712 REMARK 3 S31: 1.0200 S32: -0.5861 S33: 0.7106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 38:50) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1024 22.1307 -0.4735 REMARK 3 T TENSOR REMARK 3 T11: 1.1778 T22: 0.3975 REMARK 3 T33: 0.4004 T12: -0.2323 REMARK 3 T13: 0.2127 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 4.7532 L22: 3.7249 REMARK 3 L33: 4.1361 L12: -1.5350 REMARK 3 L13: -2.7676 L23: 0.2299 REMARK 3 S TENSOR REMARK 3 S11: -1.2635 S12: 0.1555 S13: -0.5888 REMARK 3 S21: 0.1288 S22: 1.0759 S23: 0.5302 REMARK 3 S31: 1.5408 S32: -0.4953 S33: 0.3375 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 51:73) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2498 19.5649 -12.8558 REMARK 3 T TENSOR REMARK 3 T11: 1.1168 T22: 0.5316 REMARK 3 T33: 0.6614 T12: -0.3611 REMARK 3 T13: 0.3807 T23: -0.1296 REMARK 3 L TENSOR REMARK 3 L11: 4.3357 L22: 2.7992 REMARK 3 L33: 3.4524 L12: 1.5000 REMARK 3 L13: -2.5326 L23: 1.1755 REMARK 3 S TENSOR REMARK 3 S11: -1.1225 S12: 0.1860 S13: -1.0862 REMARK 3 S21: 0.6632 S22: 0.2885 S23: -0.5167 REMARK 3 S31: 2.3461 S32: -0.2306 S33: 0.8489 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 74:110) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3901 18.7092 -20.7297 REMARK 3 T TENSOR REMARK 3 T11: 1.2194 T22: 0.7905 REMARK 3 T33: 0.5095 T12: -0.6554 REMARK 3 T13: 0.3692 T23: -0.3528 REMARK 3 L TENSOR REMARK 3 L11: 2.3045 L22: 1.7500 REMARK 3 L33: 2.0135 L12: 0.4378 REMARK 3 L13: -0.3010 L23: 0.5616 REMARK 3 S TENSOR REMARK 3 S11: -0.9472 S12: 1.3142 S13: -0.5180 REMARK 3 S21: -0.0969 S22: 0.0895 S23: 0.1500 REMARK 3 S31: 1.9427 S32: -0.8802 S33: 0.6188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 111:140) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4266 30.4546 -19.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.6156 REMARK 3 T33: 0.3255 T12: -0.2884 REMARK 3 T13: 0.0594 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 2.8880 L22: 1.7128 REMARK 3 L33: 0.7762 L12: -1.5543 REMARK 3 L13: -0.9942 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.2928 S12: 1.1521 S13: 0.2789 REMARK 3 S21: 0.3281 S22: 0.1743 S23: -0.0289 REMARK 3 S31: 0.6060 S32: -0.7889 S33: 0.0861 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 141:160) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9047 34.3902 -21.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.3949 T22: 1.3751 REMARK 3 T33: 0.5147 T12: -0.3081 REMARK 3 T13: 0.0357 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 3.1305 L22: 0.4281 REMARK 3 L33: 2.0120 L12: -0.8718 REMARK 3 L13: -1.6043 L23: 0.2762 REMARK 3 S TENSOR REMARK 3 S11: 0.1592 S12: 1.5803 S13: 0.4529 REMARK 3 S21: 0.1018 S22: 0.2262 S23: 0.3646 REMARK 3 S31: -0.1274 S32: -1.4345 S33: -0.1879 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 161:205) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0340 47.0264 -16.6975 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.3891 REMARK 3 T33: 0.3505 T12: 0.0305 REMARK 3 T13: -0.0084 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 0.7023 L22: 0.2586 REMARK 3 L33: 2.9134 L12: 1.0180 REMARK 3 L13: -1.4032 L23: -1.1215 REMARK 3 S TENSOR REMARK 3 S11: 0.1666 S12: -0.1247 S13: -0.0618 REMARK 3 S21: 0.2259 S22: 0.0678 S23: 0.0491 REMARK 3 S31: -0.1344 S32: -0.4803 S33: -0.2385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 206:209) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8115 59.9125 -18.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.5496 T22: 0.3749 REMARK 3 T33: 0.3014 T12: 0.0890 REMARK 3 T13: 0.0866 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.1860 L22: 4.5263 REMARK 3 L33: 2.0365 L12: 2.0723 REMARK 3 L13: -1.3455 L23: -1.7097 REMARK 3 S TENSOR REMARK 3 S11: -0.7943 S12: 0.0776 S13: -0.6259 REMARK 3 S21: 0.4075 S22: 0.6790 S23: -0.3413 REMARK 3 S31: -0.8014 S32: -1.0034 S33: -0.0078 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 210:291) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3868 40.7468 -11.3631 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.4427 REMARK 3 T33: 0.3716 T12: -0.0466 REMARK 3 T13: -0.0098 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 0.9811 L22: 1.8924 REMARK 3 L33: 1.1468 L12: 0.4011 REMARK 3 L13: 0.9368 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.2051 S12: -0.3509 S13: -0.1623 REMARK 3 S21: 0.1282 S22: 0.1556 S23: 0.1742 REMARK 3 S31: 0.0455 S32: -0.5326 S33: -0.3108 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 292:296) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1477 49.5310 -3.0294 REMARK 3 T TENSOR REMARK 3 T11: 0.4950 T22: 0.8283 REMARK 3 T33: 0.7462 T12: 0.0526 REMARK 3 T13: -0.0768 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.4267 L22: 4.7848 REMARK 3 L33: 2.8080 L12: 1.3950 REMARK 3 L13: 1.2879 L23: -2.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -1.7011 S13: -0.4417 REMARK 3 S21: 0.3746 S22: -0.4372 S23: -0.4917 REMARK 3 S31: -0.4321 S32: -0.2429 S33: 0.3141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 15.16 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 SHELXC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6 CRYOPROTECTED WITH 12% ETHYLENE GLYCOL AND SOAKED REMARK 280 WITH 10 MM NAD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.32067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.16033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.32067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.16033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.32067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 42.16033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 84.32067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.16033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.36200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 80.30134 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -42.16033 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 46.36200 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 80.30134 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -42.16033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 78 REMARK 465 GLY A 297 REMARK 465 GLN A 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 LEU A 81 CG CD1 CD2 REMARK 470 ILE A 85 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 40 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 85 -102.98 -63.35 REMARK 500 PRO A 87 -84.91 -87.98 REMARK 500 GLU A 111 23.32 -68.23 REMARK 500 ARG A 112 18.63 -158.36 REMARK 500 ARG A 156 -84.90 -119.66 REMARK 500 ASP A 164 115.67 -33.47 REMARK 500 SER A 209 -168.09 -121.35 REMARK 500 TYR A 219 48.24 -147.44 REMARK 500 VAL A 287 -8.21 -59.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OBB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A POSSIBLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE REMARK 900 FROM PSEUDOMONAS AERUGINOSA PAO1 REMARK 900 RELATED ID: APC6014 RELATED DB: TARGETDB DBREF 3Q3C A 1 298 UNP Q9I5I6 Q9I5I6_PSEAE 1 298 SEQADV 3Q3C GLY A 0 UNP Q9I5I6 EXPRESSION TAG SEQRES 1 A 299 GLY MSE LYS GLN ILE ALA PHE ILE GLY LEU GLY HIS MSE SEQRES 2 A 299 GLY ALA PRO MSE ALA THR ASN LEU LEU LYS ALA GLY TYR SEQRES 3 A 299 LEU LEU ASN VAL PHE ASP LEU VAL GLN SER ALA VAL ASP SEQRES 4 A 299 GLY LEU VAL ALA ALA GLY ALA SER ALA ALA ARG SER ALA SEQRES 5 A 299 ARG ASP ALA VAL GLN GLY ALA ASP VAL VAL ILE SER MSE SEQRES 6 A 299 LEU PRO ALA SER GLN HIS VAL GLU GLY LEU TYR LEU ASP SEQRES 7 A 299 ASP ASP GLY LEU LEU ALA HIS ILE ALA PRO GLY THR LEU SEQRES 8 A 299 VAL LEU GLU CYS SER THR ILE ALA PRO THR SER ALA ARG SEQRES 9 A 299 LYS ILE HIS ALA ALA ALA ARG GLU ARG GLY LEU ALA MSE SEQRES 10 A 299 LEU ASP ALA PRO VAL SER GLY GLY THR ALA GLY ALA ALA SEQRES 11 A 299 ALA GLY THR LEU THR PHE MSE VAL GLY GLY ASP ALA GLU SEQRES 12 A 299 ALA LEU GLU LYS ALA ARG PRO LEU PHE GLU ALA MSE GLY SEQRES 13 A 299 ARG ASN ILE PHE HIS ALA GLY PRO ASP GLY ALA GLY GLN SEQRES 14 A 299 VAL ALA LYS VAL CYS ASN ASN GLN LEU LEU ALA VAL LEU SEQRES 15 A 299 MSE ILE GLY THR ALA GLU ALA MSE ALA LEU GLY VAL ALA SEQRES 16 A 299 ASN GLY LEU GLU ALA LYS VAL LEU ALA GLU ILE MSE ARG SEQRES 17 A 299 ARG SER SER GLY GLY ASN TRP ALA LEU GLU VAL TYR ASN SEQRES 18 A 299 PRO TRP PRO GLY VAL MSE GLU ASN ALA PRO ALA SER ARG SEQRES 19 A 299 ASP TYR SER GLY GLY PHE MSE ALA GLN LEU MSE ALA LYS SEQRES 20 A 299 ASP LEU GLY LEU ALA GLN GLU ALA ALA GLN ALA SER ALA SEQRES 21 A 299 SER SER THR PRO MSE GLY SER LEU ALA LEU SER LEU TYR SEQRES 22 A 299 ARG LEU LEU LEU LYS GLN GLY TYR ALA GLU ARG ASP PHE SEQRES 23 A 299 SER VAL VAL GLN LYS LEU PHE ASP PRO THR GLN GLY GLN MODRES 3Q3C MSE A 12 MET SELENOMETHIONINE MODRES 3Q3C MSE A 16 MET SELENOMETHIONINE MODRES 3Q3C MSE A 64 MET SELENOMETHIONINE MODRES 3Q3C MSE A 116 MET SELENOMETHIONINE MODRES 3Q3C MSE A 136 MET SELENOMETHIONINE MODRES 3Q3C MSE A 154 MET SELENOMETHIONINE MODRES 3Q3C MSE A 182 MET SELENOMETHIONINE MODRES 3Q3C MSE A 189 MET SELENOMETHIONINE MODRES 3Q3C MSE A 206 MET SELENOMETHIONINE MODRES 3Q3C MSE A 226 MET SELENOMETHIONINE MODRES 3Q3C MSE A 240 MET SELENOMETHIONINE MODRES 3Q3C MSE A 244 MET SELENOMETHIONINE MODRES 3Q3C MSE A 264 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 16 8 HET MSE A 64 8 HET MSE A 116 8 HET MSE A 136 8 HET MSE A 154 8 HET MSE A 182 8 HET MSE A 189 8 HET MSE A 206 8 HET MSE A 226 8 HET MSE A 240 8 HET MSE A 244 8 HET MSE A 264 8 HET NAD A 299 44 HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 HOH *31(H2 O) HELIX 1 1 MSE A 12 LYS A 22 1 11 HELIX 2 2 VAL A 33 ALA A 43 1 11 HELIX 3 3 SER A 50 GLN A 56 1 7 HELIX 4 4 ALA A 67 LEU A 76 1 10 HELIX 5 5 GLY A 80 ILE A 85 1 6 HELIX 6 6 ALA A 98 GLU A 111 1 14 HELIX 7 7 GLY A 124 GLY A 131 1 8 HELIX 8 8 ASP A 140 MSE A 154 1 15 HELIX 9 9 GLY A 165 ASN A 195 1 31 HELIX 10 10 GLU A 198 ARG A 208 1 11 HELIX 11 11 ASN A 213 TYR A 219 1 7 HELIX 12 12 ALA A 229 ASP A 234 5 6 HELIX 13 13 MSE A 240 SER A 258 1 19 HELIX 14 14 THR A 262 GLN A 278 1 17 HELIX 15 15 ASP A 284 PHE A 292 5 9 SHEET 1 A 6 SER A 46 ALA A 47 0 SHEET 2 A 6 LEU A 26 PHE A 30 1 N VAL A 29 O SER A 46 SHEET 3 A 6 GLN A 3 ILE A 7 1 N ILE A 4 O LEU A 26 SHEET 4 A 6 VAL A 60 SER A 63 1 O ILE A 62 N ALA A 5 SHEET 5 A 6 LEU A 90 GLU A 93 1 O LEU A 92 N VAL A 61 SHEET 6 A 6 ALA A 115 ASP A 118 1 O LEU A 117 N GLU A 93 SHEET 1 B 3 VAL A 121 SER A 122 0 SHEET 2 B 3 LEU A 133 GLY A 138 -1 O THR A 134 N SER A 122 SHEET 3 B 3 GLY A 155 GLY A 162 1 O ARG A 156 N LEU A 133 LINK C HIS A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N GLY A 13 1555 1555 1.33 LINK C PRO A 15 N MSE A 16 1555 1555 1.33 LINK C MSE A 16 N ALA A 17 1555 1555 1.33 LINK C SER A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N LEU A 65 1555 1555 1.33 LINK C ALA A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N LEU A 117 1555 1555 1.33 LINK C PHE A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N VAL A 137 1555 1555 1.33 LINK C ALA A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLY A 155 1555 1555 1.33 LINK C LEU A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ILE A 183 1555 1555 1.33 LINK C ALA A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ALA A 190 1555 1555 1.33 LINK C ILE A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N ARG A 207 1555 1555 1.33 LINK C VAL A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N GLU A 227 1555 1555 1.33 LINK C PHE A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N ALA A 241 1555 1555 1.33 LINK C LEU A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N ALA A 245 1555 1555 1.33 LINK C PRO A 263 N MSE A 264 1555 1555 1.32 LINK C MSE A 264 N GLY A 265 1555 1555 1.33 SITE 1 AC1 22 ILE A 7 GLY A 8 LEU A 9 GLY A 10 SITE 2 AC1 22 HIS A 11 MSE A 12 PHE A 30 ASP A 31 SITE 3 AC1 22 LEU A 32 MSE A 64 LEU A 65 PRO A 66 SITE 4 AC1 22 THR A 96 VAL A 121 GLY A 123 LYS A 171 SITE 5 AC1 22 PHE A 239 LYS A 246 ASP A 247 HOH A 307 SITE 6 AC1 22 HOH A 322 HOH A 330 CRYST1 92.724 92.724 126.481 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010785 0.006227 0.000000 0.00000 SCALE2 0.000000 0.012453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007906 0.00000