HEADER OXIDOREDUCTASE 22-DEC-10 3Q3U TITLE TRAMETES CERVINA LIGNIN PEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGNIN PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-360; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES CERVINA; SOURCE 3 ORGANISM_TAXID: 295351; SOURCE 4 GENE: TCLIP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL12 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23 KEYWDS TRAMETES CERVINA, LIGNIN PEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.R.CALVINO,A.ROMERO,Y.MIKI,A.T.MARTINEZ REVDAT 3 13-SEP-23 3Q3U 1 REMARK SEQADV LINK REVDAT 2 18-MAY-11 3Q3U 1 JRNL REVDAT 1 02-MAR-11 3Q3U 0 JRNL AUTH Y.MIKI,F.R.CALVINO,R.POGNI,S.GIANSANTI,F.J.RUIZ-DUENAS, JRNL AUTH 2 M.J.MARTINEZ,R.BASOSI,A.ROMERO,A.T.MARTINEZ JRNL TITL CRYSTALLOGRAPHIC, KINETIC, AND SPECTROSCOPIC STUDY OF THE JRNL TITL 2 FIRST LIGNINOLYTIC PEROXIDASE PRESENTING A CATALYTIC JRNL TITL 3 TYROSINE. JRNL REF J.BIOL.CHEM. V. 286 15525 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21367853 JRNL DOI 10.1074/JBC.M111.220996 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 24651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1140 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.554 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2618 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3597 ; 1.839 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 6.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.226 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2050 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1701 ; 1.109 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2735 ; 1.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ; 2.702 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 855 ; 3.930 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6251 0.8207 -4.9457 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0068 REMARK 3 T33: 0.0040 T12: 0.0034 REMARK 3 T13: 0.0047 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1873 L22: 0.3723 REMARK 3 L33: 0.4594 L12: 0.0622 REMARK 3 L13: 0.0192 L23: 0.0367 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0074 S13: -0.0017 REMARK 3 S21: 0.0062 S22: 0.0077 S23: -0.0172 REMARK 3 S31: 0.0043 S32: -0.0096 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0489 -9.5336 12.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0271 REMARK 3 T33: 0.0392 T12: 0.0138 REMARK 3 T13: -0.0339 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.2050 L22: 1.8670 REMARK 3 L33: 2.8714 L12: -0.8322 REMARK 3 L13: 2.2538 L23: -0.5899 REMARK 3 S TENSOR REMARK 3 S11: 0.2335 S12: -0.0076 S13: -0.1511 REMARK 3 S21: 0.0752 S22: -0.0575 S23: -0.2170 REMARK 3 S31: 0.3378 S32: 0.0478 S33: -0.1760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26056 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FM4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 10% PEG 4000, 0.1M IMIDAZOLE REMARK 280 -HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.95200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.61600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.46550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.61600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.95200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.46550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 85 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 89 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 34 73.64 -105.96 REMARK 500 GLU A 35 -151.67 -129.45 REMARK 500 MET A 318 170.53 172.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 340 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD1 REMARK 620 2 ASP A 48 O 81.7 REMARK 620 3 GLY A 66 O 91.8 68.4 REMARK 620 4 ASP A 68 OD1 82.6 136.5 71.9 REMARK 620 5 SER A 70 OG 95.7 146.7 144.9 75.2 REMARK 620 6 HOH A 373 O 91.6 72.2 139.4 148.6 74.7 REMARK 620 7 HOH A 416 O 175.8 100.0 92.4 98.6 80.8 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 338 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 HEM A 338 NA 95.5 REMARK 620 3 HEM A 338 NB 94.6 90.7 REMARK 620 4 HEM A 338 NC 93.0 171.5 87.9 REMARK 620 5 HEM A 338 ND 94.8 88.1 170.6 91.9 REMARK 620 6 HOH A 411 O 179.4 83.9 85.2 87.6 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 341 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 176 O REMARK 620 2 SER A 176 OG 72.1 REMARK 620 3 ASP A 193 OD2 94.9 76.7 REMARK 620 4 ASP A 193 OD1 79.4 117.8 51.8 REMARK 620 5 THR A 195 O 83.1 147.1 127.9 77.0 REMARK 620 6 THR A 195 OG1 147.7 140.0 91.2 79.6 68.4 REMARK 620 7 VAL A 198 O 86.1 80.4 155.6 151.1 76.5 101.0 REMARK 620 8 ASP A 200 OD1 142.1 70.8 84.0 125.5 126.8 70.1 80.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 343 DBREF 3Q3U A 1 337 UNP Q60FD2 Q60FD2_9APHY 24 360 SEQADV 3Q3U MET A 0 UNP Q60FD2 EXPRESSION TAG SEQRES 1 A 338 MET VAL SER CYS GLY GLY GLY ARG SER VAL LYS ASN ALA SEQRES 2 A 338 ALA CYS CYS ALA TRP PHE PRO VAL LEU ASP ASP ILE GLN SEQRES 3 A 338 ALA ASN LEU PHE ASN GLY GLY LYS CYS GLU GLU GLU ALA SEQRES 4 A 338 HIS GLU ALA VAL ARG LEU THR PHE HIS ASP ALA VAL GLY SEQRES 5 A 338 PHE SER LEU ALA ALA GLN LYS ALA GLY LYS PHE GLY GLY SEQRES 6 A 338 GLY GLY ALA ASP GLY SER ILE LEU ALA PHE SER ASP ILE SEQRES 7 A 338 GLU THR ALA PHE ILE PRO ASN PHE GLY LEU GLU PHE THR SEQRES 8 A 338 THR GLU GLY PHE ILE PRO PHE ALA LEU ALA HIS GLY VAL SEQRES 9 A 338 SER PHE GLY ASP PHE VAL GLN PHE ALA GLY ALA VAL GLY SEQRES 10 A 338 ALA ALA ASN CYS ALA GLY GLY PRO ARG LEU GLN PHE LEU SEQRES 11 A 338 ALA GLY ARG SER ASN ILE SER GLN PRO SER PRO ASP GLY SEQRES 12 A 338 LEU VAL PRO ASP PRO THR ASP SER ALA ASP LYS ILE LEU SEQRES 13 A 338 ALA ARG MET ALA ASP ILE GLY PHE SER PRO THR GLU VAL SEQRES 14 A 338 VAL HIS LEU LEU ALA SER HIS SER ILE ALA ALA GLN TYR SEQRES 15 A 338 GLU VAL ASP THR ASP VAL ALA GLY SER PRO PHE ASP SER SEQRES 16 A 338 THR PRO SER VAL PHE ASP THR GLN PHE PHE VAL GLU SER SEQRES 17 A 338 LEU LEU HIS GLY THR GLN PHE THR GLY SER GLY GLN GLY SEQRES 18 A 338 GLY GLU VAL MET SER PRO ILE PRO GLY GLU PHE ARG LEU SEQRES 19 A 338 GLN SER ASP PHE ALA LEU SER ARG ASP PRO ARG THR ALA SEQRES 20 A 338 CYS GLU TRP GLN ALA LEU VAL ASN ASN GLN GLN ALA MET SEQRES 21 A 338 VAL ASN ASN PHE GLU ALA VAL MET SER ARG LEU ALA VAL SEQRES 22 A 338 ILE GLY GLN ILE PRO SER GLU LEU VAL ASP CYS SER ASP SEQRES 23 A 338 VAL ILE PRO THR PRO PRO LEU ALA LYS VAL ALA GLN VAL SEQRES 24 A 338 GLY SER LEU PRO PRO GLY LYS SER MET ALA ASP VAL GLN SEQRES 25 A 338 VAL ALA CYS THR ASN GLY MET PRO PHE PRO SER LEU PRO SEQRES 26 A 338 THR SER PRO GLY PRO VAL GLN THR VAL ALA PRO VAL LEU HET HEM A 338 43 HET MPD A 339 8 HET CA A 340 1 HET CA A 341 1 HET NA A 342 1 HET CL A 343 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 MPD C6 H14 O2 FORMUL 4 CA 2(CA 2+) FORMUL 6 NA NA 1+ FORMUL 7 CL CL 1- FORMUL 8 HOH *343(H2 O) HELIX 1 1 ASN A 11 CYS A 15 5 5 HELIX 2 2 ALA A 16 LEU A 28 1 13 HELIX 3 3 GLU A 35 VAL A 50 1 16 HELIX 4 4 SER A 53 ALA A 59 1 7 HELIX 5 5 GLY A 69 PHE A 74 1 6 HELIX 6 6 PHE A 74 THR A 79 1 6 HELIX 7 8 GLY A 86 GLY A 102 1 17 HELIX 8 9 SER A 104 ASN A 119 1 16 HELIX 9 10 SER A 150 ASP A 160 1 11 HELIX 10 11 SER A 164 LEU A 172 1 9 HELIX 11 12 ALA A 173 ILE A 177 5 5 HELIX 12 13 ASP A 184 ALA A 188 5 5 HELIX 13 14 THR A 201 LEU A 208 1 8 HELIX 14 15 GLN A 234 ASP A 242 1 9 HELIX 15 16 THR A 245 VAL A 253 1 9 HELIX 16 17 ASN A 255 ALA A 271 1 17 HELIX 17 18 ILE A 276 LEU A 280 5 5 HELIX 18 19 SER A 284 ILE A 287 5 4 HELIX 19 20 SER A 306 VAL A 310 5 5 SHEET 1 A 2 VAL A 1 GLY A 4 0 SHEET 2 A 2 ARG A 7 VAL A 9 -1 O ARG A 7 N CYS A 3 SHEET 1 B 2 LEU A 129 ALA A 130 0 SHEET 2 B 2 VAL A 281 ASP A 282 -1 O VAL A 281 N ALA A 130 SHEET 1 C 2 ALA A 179 GLN A 180 0 SHEET 2 C 2 SER A 190 PRO A 191 -1 O SER A 190 N GLN A 180 SHEET 1 D 2 GLU A 222 VAL A 223 0 SHEET 2 D 2 ARG A 232 LEU A 233 -1 O ARG A 232 N VAL A 223 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.06 SSBOND 2 CYS A 14 CYS A 283 1555 1555 2.03 SSBOND 3 CYS A 34 CYS A 120 1555 1555 2.04 SSBOND 4 CYS A 247 CYS A 314 1555 1555 2.03 LINK OD1 ASP A 48 CA CA A 340 1555 1555 2.41 LINK O ASP A 48 CA CA A 340 1555 1555 2.48 LINK O GLY A 66 CA CA A 340 1555 1555 2.42 LINK OD1 ASP A 68 CA CA A 340 1555 1555 2.44 LINK OG SER A 70 CA CA A 340 1555 1555 2.41 LINK NE2 HIS A 175 FE HEM A 338 1555 1555 2.11 LINK O SER A 176 CA CA A 341 1555 1555 2.43 LINK OG SER A 176 CA CA A 341 1555 1555 2.49 LINK OD2 ASP A 193 CA CA A 341 1555 1555 2.33 LINK OD1 ASP A 193 CA CA A 341 1555 1555 2.63 LINK O THR A 195 CA CA A 341 1555 1555 2.38 LINK OG1 THR A 195 CA CA A 341 1555 1555 2.49 LINK O VAL A 198 CA CA A 341 1555 1555 2.45 LINK OD1 ASP A 200 CA CA A 341 1555 1555 2.47 LINK FE HEM A 338 O HOH A 411 1555 1555 2.56 LINK CA CA A 340 O HOH A 373 1555 1555 2.45 LINK CA CA A 340 O HOH A 416 1555 1555 2.39 LINK NA NA A 342 O HOH A 349 1555 1555 2.57 SITE 1 AC1 23 HIS A 39 GLU A 40 ARG A 43 PHE A 46 SITE 2 AC1 23 ASP A 146 PRO A 147 LEU A 171 LEU A 172 SITE 3 AC1 23 SER A 174 HIS A 175 ALA A 178 ALA A 179 SITE 4 AC1 23 GLN A 180 TYR A 181 GLU A 182 VAL A 183 SITE 5 AC1 23 PHE A 192 LEU A 233 SER A 235 HOH A 376 SITE 6 AC1 23 HOH A 411 HOH A 449 HOH A 471 SITE 1 AC2 4 GLY A 6 PHE A 62 SER A 217 HOH A 643 SITE 1 AC3 6 ASP A 48 GLY A 66 ASP A 68 SER A 70 SITE 2 AC3 6 HOH A 373 HOH A 416 SITE 1 AC4 5 SER A 176 ASP A 193 THR A 195 VAL A 198 SITE 2 AC4 5 ASP A 200 SITE 1 AC5 1 HOH A 349 SITE 1 AC6 2 TRP A 17 HOH A 678 CRYST1 43.904 72.931 95.232 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010501 0.00000