HEADER LIGASE 23-DEC-10 3Q4G TITLE STRUCTURE OF NAD SYNTHETASE FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 11-285; COMPND 5 EC: 6.3.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: O1 BIOVAR ELTOR STR. N16961; SOURCE 5 GENE: NADE, VCD_000045; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL KEYWDS STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, ALPHA BETA, 3-LAYER(ABA) SANDWICH, ROSSMANN KEYWDS 3 FOLD, NAD SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ANDERSON,Z.WAWRZAK,O.ONOPRIYENKO,S.N.PETERSON,W.F.ANDERSON, AUTHOR 2 A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 12-NOV-14 3Q4G 1 KEYWDS REVDAT 2 08-OCT-14 3Q4G 1 AUTHOR JRNL VERSN REVDAT 1 26-JAN-11 3Q4G 0 JRNL AUTH S.M.ANDERSON,Z.WAWRZAK,O.ONOPRIYENKO,S.N.PETERSON, JRNL AUTH 2 W.F.ANDERSON,A.SAVCHENKO, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL STRUCTURE OF NAD SYNTHETASE FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7200 - 5.1600 1.00 3363 177 0.1910 0.2040 REMARK 3 2 5.1600 - 4.1000 1.00 3231 173 0.1330 0.1920 REMARK 3 3 4.1000 - 3.5800 1.00 3182 170 0.1370 0.1770 REMARK 3 4 3.5800 - 3.2500 1.00 3184 169 0.1590 0.2140 REMARK 3 5 3.2500 - 3.0200 1.00 3143 168 0.1700 0.2150 REMARK 3 6 3.0200 - 2.8400 1.00 3153 167 0.1810 0.2330 REMARK 3 7 2.8400 - 2.7000 1.00 3141 165 0.1840 0.2410 REMARK 3 8 2.7000 - 2.5800 1.00 3152 165 0.2020 0.2600 REMARK 3 9 2.5800 - 2.4800 0.99 3078 163 0.2280 0.2580 REMARK 3 10 2.4800 - 2.4000 0.94 2907 151 0.2700 0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 58.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.51000 REMARK 3 B22 (A**2) : 6.51000 REMARK 3 B33 (A**2) : -13.02000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4185 REMARK 3 ANGLE : 0.847 5670 REMARK 3 CHIRALITY : 0.061 640 REMARK 3 PLANARITY : 0.005 746 REMARK 3 DIHEDRAL : 12.361 1566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 1:78) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5995 46.2045 61.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.1848 REMARK 3 T33: 0.1637 T12: -0.0260 REMARK 3 T13: 0.0276 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.7491 L22: 1.5219 REMARK 3 L33: 1.6496 L12: 0.5804 REMARK 3 L13: 0.5384 L23: 1.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0060 S13: -0.0088 REMARK 3 S21: -0.1674 S22: 0.0126 S23: -0.1731 REMARK 3 S31: -0.1399 S32: 0.2373 S33: -0.0327 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 79:92) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3122 57.7896 47.9113 REMARK 3 T TENSOR REMARK 3 T11: 0.6728 T22: 0.3370 REMARK 3 T33: 0.2579 T12: 0.1332 REMARK 3 T13: -0.0331 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.9993 L22: 2.2011 REMARK 3 L33: 3.1726 L12: -1.0875 REMARK 3 L13: 2.1103 L23: 0.0859 REMARK 3 S TENSOR REMARK 3 S11: 0.1806 S12: 0.4757 S13: 0.1118 REMARK 3 S21: -0.3739 S22: -0.2566 S23: 0.5725 REMARK 3 S31: -0.2265 S32: -0.3257 S33: 0.0383 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 93:135) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0686 46.7044 39.9171 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.1877 REMARK 3 T33: 0.1570 T12: 0.1840 REMARK 3 T13: -0.0570 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.5832 L22: 0.7615 REMARK 3 L33: 1.9303 L12: -0.2391 REMARK 3 L13: -0.3614 L23: 0.5072 REMARK 3 S TENSOR REMARK 3 S11: 0.1181 S12: 0.1675 S13: 0.1378 REMARK 3 S21: -0.3251 S22: -0.2498 S23: 0.2796 REMARK 3 S31: -0.5901 S32: -0.2504 S33: 0.1662 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 136:214) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8482 44.8013 54.3249 REMARK 3 T TENSOR REMARK 3 T11: 0.2172 T22: 0.2009 REMARK 3 T33: 0.1947 T12: 0.0478 REMARK 3 T13: 0.0114 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.4521 L22: 0.4940 REMARK 3 L33: 1.4565 L12: 0.0868 REMARK 3 L13: 0.5505 L23: 0.7244 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0024 S13: -0.0528 REMARK 3 S21: -0.2282 S22: -0.1655 S23: 0.0822 REMARK 3 S31: -0.3006 S32: -0.1553 S33: 0.1048 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 215:276) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3311 31.4738 60.8079 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.3422 REMARK 3 T33: 0.2193 T12: -0.0700 REMARK 3 T13: 0.0161 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.6508 L22: 2.1735 REMARK 3 L33: 1.8960 L12: 0.0879 REMARK 3 L13: 0.4459 L23: 1.8793 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0858 S13: -0.2495 REMARK 3 S21: -0.0170 S22: -0.5363 S23: 0.4550 REMARK 3 S31: 0.1733 S32: -0.5394 S33: 0.3515 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain B and resid 1:78) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0196 17.3036 37.7625 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.1643 REMARK 3 T33: 0.1930 T12: 0.0387 REMARK 3 T13: -0.0103 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9297 L22: 0.8915 REMARK 3 L33: 1.2599 L12: 0.2134 REMARK 3 L13: -0.2611 L23: 0.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0524 S13: 0.1055 REMARK 3 S21: 0.0787 S22: -0.0644 S23: -0.0067 REMARK 3 S31: 0.1109 S32: -0.1414 S33: 0.0435 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain B and resid 79:92) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9923 34.1682 20.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.4865 T22: 0.2679 REMARK 3 T33: 0.2479 T12: 0.1519 REMARK 3 T13: -0.0569 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6188 L22: 3.5729 REMARK 3 L33: 7.8010 L12: 0.4484 REMARK 3 L13: -1.6234 L23: 2.2144 REMARK 3 S TENSOR REMARK 3 S11: 0.2301 S12: -0.0938 S13: -0.1790 REMARK 3 S21: -0.7439 S22: -0.3922 S23: -0.5277 REMARK 3 S31: -1.3080 S32: 0.2730 S33: 0.2375 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain B and resid 93:135) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1421 42.4157 30.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: 0.2451 REMARK 3 T33: 0.1119 T12: 0.0256 REMARK 3 T13: 0.0137 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.4283 L22: 2.0818 REMARK 3 L33: 2.0433 L12: 0.4168 REMARK 3 L13: 0.1626 L23: 0.7860 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.2113 S13: 0.1601 REMARK 3 S21: -0.7936 S22: -0.0420 S23: 0.1870 REMARK 3 S31: -0.9521 S32: 0.1716 S33: 0.0152 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain B and resid 136:214) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0449 28.1272 34.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.2286 T22: 0.2411 REMARK 3 T33: 0.1249 T12: 0.0074 REMARK 3 T13: 0.0304 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.1891 L22: 1.5566 REMARK 3 L33: 0.7016 L12: 0.4623 REMARK 3 L13: -0.0410 L23: 0.4434 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.0579 S13: 0.0106 REMARK 3 S21: -0.2460 S22: -0.0280 S23: -0.0798 REMARK 3 S31: -0.3483 S32: 0.0391 S33: -0.0580 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain B and resid 215:276) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7595 27.3212 44.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.2864 REMARK 3 T33: 0.3169 T12: -0.0165 REMARK 3 T13: 0.0080 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.7444 L22: 1.7394 REMARK 3 L33: 4.5434 L12: 0.2157 REMARK 3 L13: -1.2254 L23: 1.7044 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.2262 S13: -0.2991 REMARK 3 S21: -0.1808 S22: 0.2386 S23: -0.3019 REMARK 3 S31: -0.4658 S32: 0.6787 S33: -0.1855 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB063181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) DIAMOND LAUE MONOCHROMATOR REMARK 200 OPTICS : BERYLLIUM LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.400 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 100MM SODIUM REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.19800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.09900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.09900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.19800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 LEU A 223 REMARK 465 ALA A 224 REMARK 465 PRO A 225 REMARK 465 GLN A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 LEU A 233 REMARK 465 ASP B 132 REMARK 465 PRO B 133 REMARK 465 ALA B 134 REMARK 465 THR B 215 REMARK 465 PRO B 216 REMARK 465 THR B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 LEU B 220 REMARK 465 GLU B 221 REMARK 465 GLU B 222 REMARK 465 LEU B 223 REMARK 465 ALA B 224 REMARK 465 PRO B 225 REMARK 465 GLN B 226 REMARK 465 LYS B 227 REMARK 465 ALA B 228 REMARK 465 ASP B 229 REMARK 465 GLU B 230 REMARK 465 ALA B 231 REMARK 465 ALA B 232 REMARK 465 LEU B 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 217 OG1 CG2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 11.06 84.05 REMARK 500 ALA A 134 58.05 -91.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 279 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 HOH A 326 O 143.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 277 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90843 RELATED DB: TARGETDB DBREF 3Q4G A 1 276 UNP C3NY23 C3NY23_VIBCJ 10 285 DBREF 3Q4G B 1 276 UNP C3NY23 C3NY23_VIBCJ 10 285 SEQADV 3Q4G SER A -2 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G ASN A -1 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G ALA A 0 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G TYR A 37 UNP C3NY23 CYS 46 ENGINEERED MUTATION SEQADV 3Q4G SER B -2 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G ASN B -1 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G ALA B 0 UNP C3NY23 EXPRESSION TAG SEQADV 3Q4G TYR B 37 UNP C3NY23 CYS 46 ENGINEERED MUTATION SEQRES 1 A 279 SER ASN ALA MSE GLU HIS LYS ILE ARG GLU GLU MSE ARG SEQRES 2 A 279 VAL LEU PRO SER ILE ASP PRO GLN PHE GLU ILE GLU ARG SEQRES 3 A 279 ARG VAL ALA PHE ILE LYS ARG LYS LEU THR GLU ALA ARG SEQRES 4 A 279 TYR LYS SER LEU VAL LEU GLY ILE SER GLY GLY VAL ASP SEQRES 5 A 279 SER THR THR CYS GLY ARG LEU ALA GLN LEU ALA VAL GLU SEQRES 6 A 279 GLU LEU ASN GLN GLN HIS ASN THR THR GLU TYR GLN PHE SEQRES 7 A 279 ILE ALA VAL ARG LEU PRO TYR GLY GLU GLN LYS ASP GLU SEQRES 8 A 279 ASP GLU ALA GLN LEU ALA LEU SER PHE ILE ARG PRO THR SEQRES 9 A 279 HIS SER VAL SER VAL ASN ILE LYS ALA GLY VAL ASP GLY SEQRES 10 A 279 LEU HIS ALA ALA SER HIS HIS ALA LEU ALA ASN THR GLY SEQRES 11 A 279 LEU ILE PRO SER ASP PRO ALA LYS VAL ASP PHE ILE LYS SEQRES 12 A 279 GLY ASN VAL LYS ALA ARG ALA ARG MSE VAL ALA GLN TYR SEQRES 13 A 279 GLU ILE ALA GLY TYR VAL GLY GLY LEU VAL LEU GLY THR SEQRES 14 A 279 ASP HIS SER ALA GLU ASN ILE THR GLY PHE TYR THR LYS SEQRES 15 A 279 PHE GLY ASP GLY ALA CYS ASP LEU ALA PRO LEU PHE GLY SEQRES 16 A 279 LEU ASN LYS ARG GLN VAL ARG LEU LEU ALA LYS THR LEU SEQRES 17 A 279 GLY ALA PRO GLU GLN LEU VAL TYR LYS THR PRO THR ALA SEQRES 18 A 279 ASP LEU GLU GLU LEU ALA PRO GLN LYS ALA ASP GLU ALA SEQRES 19 A 279 ALA LEU ASN LEU THR TYR GLU GLN ILE ASP ASP PHE LEU SEQRES 20 A 279 GLU GLY LYS ALA VAL PRO ALA GLU VAL SER GLN ARG LEU SEQRES 21 A 279 VAL ALA ILE TYR HIS ALA THR GLN HIS LYS ARG GLN PRO SEQRES 22 A 279 ILE PRO THR ILE TYR ASP SEQRES 1 B 279 SER ASN ALA MSE GLU HIS LYS ILE ARG GLU GLU MSE ARG SEQRES 2 B 279 VAL LEU PRO SER ILE ASP PRO GLN PHE GLU ILE GLU ARG SEQRES 3 B 279 ARG VAL ALA PHE ILE LYS ARG LYS LEU THR GLU ALA ARG SEQRES 4 B 279 TYR LYS SER LEU VAL LEU GLY ILE SER GLY GLY VAL ASP SEQRES 5 B 279 SER THR THR CYS GLY ARG LEU ALA GLN LEU ALA VAL GLU SEQRES 6 B 279 GLU LEU ASN GLN GLN HIS ASN THR THR GLU TYR GLN PHE SEQRES 7 B 279 ILE ALA VAL ARG LEU PRO TYR GLY GLU GLN LYS ASP GLU SEQRES 8 B 279 ASP GLU ALA GLN LEU ALA LEU SER PHE ILE ARG PRO THR SEQRES 9 B 279 HIS SER VAL SER VAL ASN ILE LYS ALA GLY VAL ASP GLY SEQRES 10 B 279 LEU HIS ALA ALA SER HIS HIS ALA LEU ALA ASN THR GLY SEQRES 11 B 279 LEU ILE PRO SER ASP PRO ALA LYS VAL ASP PHE ILE LYS SEQRES 12 B 279 GLY ASN VAL LYS ALA ARG ALA ARG MSE VAL ALA GLN TYR SEQRES 13 B 279 GLU ILE ALA GLY TYR VAL GLY GLY LEU VAL LEU GLY THR SEQRES 14 B 279 ASP HIS SER ALA GLU ASN ILE THR GLY PHE TYR THR LYS SEQRES 15 B 279 PHE GLY ASP GLY ALA CYS ASP LEU ALA PRO LEU PHE GLY SEQRES 16 B 279 LEU ASN LYS ARG GLN VAL ARG LEU LEU ALA LYS THR LEU SEQRES 17 B 279 GLY ALA PRO GLU GLN LEU VAL TYR LYS THR PRO THR ALA SEQRES 18 B 279 ASP LEU GLU GLU LEU ALA PRO GLN LYS ALA ASP GLU ALA SEQRES 19 B 279 ALA LEU ASN LEU THR TYR GLU GLN ILE ASP ASP PHE LEU SEQRES 20 B 279 GLU GLY LYS ALA VAL PRO ALA GLU VAL SER GLN ARG LEU SEQRES 21 B 279 VAL ALA ILE TYR HIS ALA THR GLN HIS LYS ARG GLN PRO SEQRES 22 B 279 ILE PRO THR ILE TYR ASP MODRES 3Q4G MSE A 1 MET SELENOMETHIONINE MODRES 3Q4G MSE A 9 MET SELENOMETHIONINE MODRES 3Q4G MSE A 149 MET SELENOMETHIONINE MODRES 3Q4G MSE B 1 MET SELENOMETHIONINE MODRES 3Q4G MSE B 9 MET SELENOMETHIONINE MODRES 3Q4G MSE B 149 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 8 HET MSE A 149 8 HET MSE B 1 8 HET MSE B 9 8 HET MSE B 149 8 HET CA A 277 1 HET CA A 278 1 HET CA A 279 1 HET CA B 277 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *411(H2 O) HELIX 1 1 ASN A -1 ARG A 10 1 12 HELIX 2 2 ASP A 16 ARG A 36 1 21 HELIX 3 3 GLY A 47 HIS A 68 1 22 HELIX 4 4 ASP A 87 ARG A 99 1 13 HELIX 5 5 ILE A 108 GLY A 127 1 20 HELIX 6 6 LYS A 135 GLY A 160 1 26 HELIX 7 7 HIS A 168 GLY A 175 1 8 HELIX 8 8 ASN A 194 LEU A 205 1 12 HELIX 9 9 PRO A 208 TYR A 213 1 6 HELIX 10 10 THR A 236 GLY A 246 1 11 HELIX 11 11 PRO A 250 THR A 264 1 15 HELIX 12 12 THR A 264 GLN A 269 1 6 HELIX 13 13 ASN B -1 ARG B 10 1 12 HELIX 14 14 ASP B 16 ARG B 36 1 21 HELIX 15 15 GLY B 47 HIS B 68 1 22 HELIX 16 16 ASP B 87 ARG B 99 1 13 HELIX 17 17 ILE B 108 ASN B 125 1 18 HELIX 18 18 LYS B 135 GLY B 160 1 26 HELIX 19 19 HIS B 168 GLY B 175 1 8 HELIX 20 20 ASN B 194 GLY B 206 1 13 HELIX 21 21 PRO B 208 TYR B 213 1 6 HELIX 22 22 THR B 236 GLY B 246 1 11 HELIX 23 23 PRO B 250 THR B 264 1 15 HELIX 24 24 THR B 264 GLN B 269 1 6 SHEET 1 A 4 HIS A 102 SER A 105 0 SHEET 2 A 4 GLN A 74 ARG A 79 1 N ALA A 77 O HIS A 102 SHEET 3 A 4 SER A 39 GLY A 43 1 N LEU A 40 O ILE A 76 SHEET 4 A 4 GLY A 161 VAL A 163 1 O LEU A 162 N VAL A 41 SHEET 1 B 4 HIS B 102 SER B 105 0 SHEET 2 B 4 GLN B 74 ARG B 79 1 N ARG B 79 O VAL B 104 SHEET 3 B 4 SER B 39 GLY B 43 1 N LEU B 40 O ILE B 76 SHEET 4 B 4 GLY B 161 VAL B 163 1 O LEU B 162 N VAL B 41 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLU A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N ARG A 10 1555 1555 1.33 LINK C ARG A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N VAL A 150 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C GLU B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N ARG B 10 1555 1555 1.33 LINK C ARG B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N VAL B 150 1555 1555 1.33 LINK OG SER A 50 CA CA A 279 1555 1555 2.97 LINK CA CA A 279 O HOH A 326 1555 1555 3.05 LINK CA CA B 277 O HOH B 372 1555 1555 3.13 LINK CA CA A 278 O HOH A 338 1555 1555 3.13 SITE 1 AC1 3 GLN A 58 ASN A 65 THR A 101 SITE 1 AC2 3 ARG A 23 PRO B 208 GLN B 210 SITE 1 AC3 5 SER A 45 GLY A 47 ASP A 49 SER A 50 SITE 2 AC3 5 HOH A 326 SITE 1 AC4 4 GLN B 58 GLU B 62 ASN B 65 THR B 101 CRYST1 93.426 93.426 165.297 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010704 0.006180 0.000000 0.00000 SCALE2 0.000000 0.012360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006050 0.00000