data_3Q5F # _entry.id 3Q5F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3Q5F pdb_00003q5f 10.2210/pdb3q5f/pdb NDB NA0905 ? ? RCSB RCSB063216 ? ? WWPDB D_1000063216 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ncs_dom_lim 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 13 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 14 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 15 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 16 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 17 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 18 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 19 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 20 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 3Q5F _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-12-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3QPT _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dolan, K.T.' 1 'Duguid, E.M.' 2 # _citation.id primary _citation.title 'Crystal Structures of SlyA Protein, a Master Virulence Regulator of Salmonella, in Free and DNA-bound States.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 22178 _citation.page_last 22185 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21550983 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.245258 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dolan, K.T.' 1 ? primary 'Duguid, E.M.' 2 ? primary 'He, C.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator slyA' 16761.391 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*TP*AP*AP*CP*TP*TP*AP*GP*CP*AP*AP*GP*CP*TP*AP*AP*TP*TP*AP*TP*A)-3') ; 7055.625 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*TP*AP*TP*AP*AP*TP*TP*AP*GP*CP*TP*TP*GP*CP*TP*AP*AP*GP*TP*TP*AP*T)-3') ; 7059.592 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytolysin slyA, Salmolysin' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SNAMESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS RQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELHSHD ; ;SNAMESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS RQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELHSHD ; A,B ? 2 polydeoxyribonucleotide no no ;(DA)(DA)(DT)(DA)(DA)(DC)(DT)(DT)(DA)(DG)(DC)(DA)(DA)(DG)(DC)(DT)(DA)(DA)(DT)(DT) (DA)(DT)(DA) ; AATAACTTAGCAAGCTAATTATA C ? 3 polydeoxyribonucleotide no no ;(DT)(DT)(DA)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DC)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DG)(DT) (DT)(DA)(DT) ; TTATAATTAGCTTGCTAAGTTAT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 GLU n 1 6 SER n 1 7 PRO n 1 8 LEU n 1 9 GLY n 1 10 SER n 1 11 ASP n 1 12 LEU n 1 13 ALA n 1 14 ARG n 1 15 LEU n 1 16 VAL n 1 17 ARG n 1 18 ILE n 1 19 TRP n 1 20 ARG n 1 21 ALA n 1 22 LEU n 1 23 ILE n 1 24 ASP n 1 25 HIS n 1 26 ARG n 1 27 LEU n 1 28 LYS n 1 29 PRO n 1 30 LEU n 1 31 GLU n 1 32 LEU n 1 33 THR n 1 34 GLN n 1 35 THR n 1 36 HIS n 1 37 TRP n 1 38 VAL n 1 39 THR n 1 40 LEU n 1 41 HIS n 1 42 ASN n 1 43 ILE n 1 44 HIS n 1 45 GLN n 1 46 LEU n 1 47 PRO n 1 48 PRO n 1 49 ASP n 1 50 GLN n 1 51 SER n 1 52 GLN n 1 53 ILE n 1 54 GLN n 1 55 LEU n 1 56 ALA n 1 57 LYS n 1 58 ALA n 1 59 ILE n 1 60 GLY n 1 61 ILE n 1 62 GLU n 1 63 GLN n 1 64 PRO n 1 65 SER n 1 66 LEU n 1 67 VAL n 1 68 ARG n 1 69 THR n 1 70 LEU n 1 71 ASP n 1 72 GLN n 1 73 LEU n 1 74 GLU n 1 75 ASP n 1 76 LYS n 1 77 GLY n 1 78 LEU n 1 79 ILE n 1 80 SER n 1 81 ARG n 1 82 GLN n 1 83 THR n 1 84 CYS n 1 85 ALA n 1 86 SER n 1 87 ASP n 1 88 ARG n 1 89 ARG n 1 90 ALA n 1 91 LYS n 1 92 ARG n 1 93 ILE n 1 94 LYS n 1 95 LEU n 1 96 THR n 1 97 GLU n 1 98 LYS n 1 99 ALA n 1 100 GLU n 1 101 PRO n 1 102 LEU n 1 103 ILE n 1 104 ALA n 1 105 GLU n 1 106 MET n 1 107 GLU n 1 108 GLU n 1 109 VAL n 1 110 ILE n 1 111 HIS n 1 112 LYS n 1 113 THR n 1 114 ARG n 1 115 GLY n 1 116 GLU n 1 117 ILE n 1 118 LEU n 1 119 ALA n 1 120 GLY n 1 121 ILE n 1 122 SER n 1 123 SER n 1 124 GLU n 1 125 GLU n 1 126 ILE n 1 127 GLU n 1 128 LEU n 1 129 LEU n 1 130 ILE n 1 131 LYS n 1 132 LEU n 1 133 ILE n 1 134 ALA n 1 135 LYS n 1 136 LEU n 1 137 GLU n 1 138 HIS n 1 139 ASN n 1 140 ILE n 1 141 MET n 1 142 GLU n 1 143 LEU n 1 144 HIS n 1 145 SER n 1 146 HIS n 1 147 ASP n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DG n 2 11 DC n 2 12 DA n 2 13 DA n 2 14 DG n 2 15 DC n 2 16 DT n 2 17 DA n 2 18 DA n 2 19 DT n 2 20 DT n 2 21 DA n 2 22 DT n 2 23 DA n 3 1 DT n 3 2 DT n 3 3 DA n 3 4 DT n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DT n 3 9 DA n 3 10 DG n 3 11 DC n 3 12 DT n 3 13 DT n 3 14 DG n 3 15 DC n 3 16 DT n 3 17 DA n 3 18 DA n 3 19 DG n 3 20 DT n 3 21 DT n 3 22 DA n 3 23 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'slyA, STM1444' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'enterica serovar Typhimurium' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 90371 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 GLU 5 2 2 GLU GLU A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 GLY 9 6 6 GLY GLY A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 ASP 11 8 8 ASP ASP A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 ILE 18 15 15 ILE ILE A . n A 1 19 TRP 19 16 16 TRP TRP A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 ILE 23 20 20 ILE ILE A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 HIS 25 22 22 HIS HIS A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 THR 33 30 30 THR THR A . n A 1 34 GLN 34 31 31 GLN GLN A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 HIS 36 33 33 HIS HIS A . n A 1 37 TRP 37 34 34 TRP TRP A . n A 1 38 VAL 38 35 35 VAL VAL A . n A 1 39 THR 39 36 36 THR THR A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 HIS 41 38 38 HIS HIS A . n A 1 42 ASN 42 39 39 ASN ASN A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 HIS 44 41 41 HIS HIS A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 PRO 47 44 44 PRO PRO A . n A 1 48 PRO 48 45 45 PRO PRO A . n A 1 49 ASP 49 46 46 ASP ASP A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 GLN 52 49 49 GLN GLN A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 ALA 56 53 53 ALA ALA A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 ILE 61 58 58 ILE ILE A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 PRO 64 61 61 PRO PRO A . n A 1 65 SER 65 62 62 SER SER A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 VAL 67 64 64 VAL VAL A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 THR 69 66 66 THR THR A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 ASP 75 72 72 ASP ASP A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 GLY 77 74 74 GLY GLY A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 ILE 79 76 76 ILE ILE A . n A 1 80 SER 80 77 77 SER SER A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 GLN 82 79 79 GLN GLN A . n A 1 83 THR 83 80 80 THR THR A . n A 1 84 CYS 84 81 81 CYS CYS A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 ARG 88 85 85 ARG ARG A . n A 1 89 ARG 89 86 86 ARG ARG A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 ARG 92 89 89 ARG ARG A . n A 1 93 ILE 93 90 90 ILE ILE A . n A 1 94 LYS 94 91 91 LYS LYS A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 THR 96 93 93 THR THR A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 LYS 98 95 95 LYS LYS A . n A 1 99 ALA 99 96 96 ALA ALA A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 PRO 101 98 98 PRO PRO A . n A 1 102 LEU 102 99 99 LEU LEU A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 GLU 105 102 102 GLU GLU A . n A 1 106 MET 106 103 103 MET MET A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 ILE 110 107 107 ILE ILE A . n A 1 111 HIS 111 108 108 HIS HIS A . n A 1 112 LYS 112 109 109 LYS LYS A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 ARG 114 111 111 ARG ARG A . n A 1 115 GLY 115 112 112 GLY GLY A . n A 1 116 GLU 116 113 113 GLU GLU A . n A 1 117 ILE 117 114 114 ILE ILE A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 ALA 119 116 116 ALA ALA A . n A 1 120 GLY 120 117 117 GLY GLY A . n A 1 121 ILE 121 118 118 ILE ILE A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 GLU 125 122 122 GLU GLU A . n A 1 126 ILE 126 123 123 ILE ILE A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 LEU 128 125 125 LEU LEU A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 LYS 131 128 128 LYS LYS A . n A 1 132 LEU 132 129 129 LEU LEU A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 LEU 136 133 133 LEU LEU A . n A 1 137 GLU 137 134 134 GLU GLU A . n A 1 138 HIS 138 135 135 HIS HIS A . n A 1 139 ASN 139 136 136 ASN ASN A . n A 1 140 ILE 140 137 137 ILE ILE A . n A 1 141 MET 141 138 138 MET MET A . n A 1 142 GLU 142 139 139 GLU GLU A . n A 1 143 LEU 143 140 140 LEU LEU A . n A 1 144 HIS 144 141 141 HIS HIS A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 HIS 146 143 ? ? ? A . n A 1 147 ASP 147 144 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MET 4 1 ? ? ? B . n B 1 5 GLU 5 2 ? ? ? B . n B 1 6 SER 6 3 3 SER SER B . n B 1 7 PRO 7 4 4 PRO PRO B . n B 1 8 LEU 8 5 5 LEU LEU B . n B 1 9 GLY 9 6 6 GLY GLY B . n B 1 10 SER 10 7 7 SER SER B . n B 1 11 ASP 11 8 8 ASP ASP B . n B 1 12 LEU 12 9 9 LEU LEU B . n B 1 13 ALA 13 10 10 ALA ALA B . n B 1 14 ARG 14 11 11 ARG ARG B . n B 1 15 LEU 15 12 12 LEU LEU B . n B 1 16 VAL 16 13 13 VAL VAL B . n B 1 17 ARG 17 14 14 ARG ARG B . n B 1 18 ILE 18 15 15 ILE ILE B . n B 1 19 TRP 19 16 16 TRP TRP B . n B 1 20 ARG 20 17 17 ARG ARG B . n B 1 21 ALA 21 18 18 ALA ALA B . n B 1 22 LEU 22 19 19 LEU LEU B . n B 1 23 ILE 23 20 20 ILE ILE B . n B 1 24 ASP 24 21 21 ASP ASP B . n B 1 25 HIS 25 22 22 HIS HIS B . n B 1 26 ARG 26 23 23 ARG ARG B . n B 1 27 LEU 27 24 24 LEU LEU B . n B 1 28 LYS 28 25 25 LYS LYS B . n B 1 29 PRO 29 26 26 PRO PRO B . n B 1 30 LEU 30 27 27 LEU LEU B . n B 1 31 GLU 31 28 28 GLU GLU B . n B 1 32 LEU 32 29 29 LEU LEU B . n B 1 33 THR 33 30 30 THR THR B . n B 1 34 GLN 34 31 31 GLN GLN B . n B 1 35 THR 35 32 32 THR THR B . n B 1 36 HIS 36 33 33 HIS HIS B . n B 1 37 TRP 37 34 34 TRP TRP B . n B 1 38 VAL 38 35 35 VAL VAL B . n B 1 39 THR 39 36 36 THR THR B . n B 1 40 LEU 40 37 37 LEU LEU B . n B 1 41 HIS 41 38 38 HIS HIS B . n B 1 42 ASN 42 39 39 ASN ASN B . n B 1 43 ILE 43 40 40 ILE ILE B . n B 1 44 HIS 44 41 41 HIS HIS B . n B 1 45 GLN 45 42 42 GLN GLN B . n B 1 46 LEU 46 43 43 LEU LEU B . n B 1 47 PRO 47 44 44 PRO PRO B . n B 1 48 PRO 48 45 45 PRO PRO B . n B 1 49 ASP 49 46 46 ASP ASP B . n B 1 50 GLN 50 47 47 GLN GLN B . n B 1 51 SER 51 48 48 SER SER B . n B 1 52 GLN 52 49 49 GLN GLN B . n B 1 53 ILE 53 50 50 ILE ILE B . n B 1 54 GLN 54 51 51 GLN GLN B . n B 1 55 LEU 55 52 52 LEU LEU B . n B 1 56 ALA 56 53 53 ALA ALA B . n B 1 57 LYS 57 54 54 LYS LYS B . n B 1 58 ALA 58 55 55 ALA ALA B . n B 1 59 ILE 59 56 56 ILE ILE B . n B 1 60 GLY 60 57 57 GLY GLY B . n B 1 61 ILE 61 58 58 ILE ILE B . n B 1 62 GLU 62 59 59 GLU GLU B . n B 1 63 GLN 63 60 60 GLN GLN B . n B 1 64 PRO 64 61 61 PRO PRO B . n B 1 65 SER 65 62 62 SER SER B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 VAL 67 64 64 VAL VAL B . n B 1 68 ARG 68 65 65 ARG ARG B . n B 1 69 THR 69 66 66 THR THR B . n B 1 70 LEU 70 67 67 LEU LEU B . n B 1 71 ASP 71 68 68 ASP ASP B . n B 1 72 GLN 72 69 69 GLN GLN B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 GLU 74 71 71 GLU GLU B . n B 1 75 ASP 75 72 72 ASP ASP B . n B 1 76 LYS 76 73 73 LYS LYS B . n B 1 77 GLY 77 74 74 GLY GLY B . n B 1 78 LEU 78 75 75 LEU LEU B . n B 1 79 ILE 79 76 76 ILE ILE B . n B 1 80 SER 80 77 77 SER SER B . n B 1 81 ARG 81 78 78 ARG ARG B . n B 1 82 GLN 82 79 79 GLN GLN B . n B 1 83 THR 83 80 80 THR THR B . n B 1 84 CYS 84 81 81 CYS CYS B . n B 1 85 ALA 85 82 82 ALA ALA B . n B 1 86 SER 86 83 83 SER SER B . n B 1 87 ASP 87 84 84 ASP ASP B . n B 1 88 ARG 88 85 85 ARG ARG B . n B 1 89 ARG 89 86 86 ARG ARG B . n B 1 90 ALA 90 87 87 ALA ALA B . n B 1 91 LYS 91 88 88 LYS LYS B . n B 1 92 ARG 92 89 89 ARG ARG B . n B 1 93 ILE 93 90 90 ILE ILE B . n B 1 94 LYS 94 91 91 LYS LYS B . n B 1 95 LEU 95 92 92 LEU LEU B . n B 1 96 THR 96 93 93 THR THR B . n B 1 97 GLU 97 94 94 GLU GLU B . n B 1 98 LYS 98 95 95 LYS LYS B . n B 1 99 ALA 99 96 96 ALA ALA B . n B 1 100 GLU 100 97 97 GLU GLU B . n B 1 101 PRO 101 98 98 PRO PRO B . n B 1 102 LEU 102 99 99 LEU LEU B . n B 1 103 ILE 103 100 100 ILE ILE B . n B 1 104 ALA 104 101 101 ALA ALA B . n B 1 105 GLU 105 102 102 GLU GLU B . n B 1 106 MET 106 103 103 MET MET B . n B 1 107 GLU 107 104 104 GLU GLU B . n B 1 108 GLU 108 105 105 GLU GLU B . n B 1 109 VAL 109 106 106 VAL VAL B . n B 1 110 ILE 110 107 107 ILE ILE B . n B 1 111 HIS 111 108 108 HIS HIS B . n B 1 112 LYS 112 109 109 LYS LYS B . n B 1 113 THR 113 110 110 THR THR B . n B 1 114 ARG 114 111 111 ARG ARG B . n B 1 115 GLY 115 112 112 GLY GLY B . n B 1 116 GLU 116 113 113 GLU GLU B . n B 1 117 ILE 117 114 114 ILE ILE B . n B 1 118 LEU 118 115 115 LEU LEU B . n B 1 119 ALA 119 116 116 ALA ALA B . n B 1 120 GLY 120 117 117 GLY GLY B . n B 1 121 ILE 121 118 118 ILE ILE B . n B 1 122 SER 122 119 119 SER SER B . n B 1 123 SER 123 120 120 SER SER B . n B 1 124 GLU 124 121 121 GLU GLU B . n B 1 125 GLU 125 122 122 GLU GLU B . n B 1 126 ILE 126 123 123 ILE ILE B . n B 1 127 GLU 127 124 124 GLU GLU B . n B 1 128 LEU 128 125 125 LEU LEU B . n B 1 129 LEU 129 126 126 LEU LEU B . n B 1 130 ILE 130 127 127 ILE ILE B . n B 1 131 LYS 131 128 128 LYS LYS B . n B 1 132 LEU 132 129 129 LEU LEU B . n B 1 133 ILE 133 130 130 ILE ILE B . n B 1 134 ALA 134 131 131 ALA ALA B . n B 1 135 LYS 135 132 132 LYS LYS B . n B 1 136 LEU 136 133 133 LEU LEU B . n B 1 137 GLU 137 134 134 GLU GLU B . n B 1 138 HIS 138 135 135 HIS HIS B . n B 1 139 ASN 139 136 136 ASN ASN B . n B 1 140 ILE 140 137 137 ILE ILE B . n B 1 141 MET 141 138 138 MET MET B . n B 1 142 GLU 142 139 139 GLU GLU B . n B 1 143 LEU 143 140 140 LEU LEU B . n B 1 144 HIS 144 141 141 HIS HIS B . n B 1 145 SER 145 142 142 SER SER B . n B 1 146 HIS 146 143 ? ? ? B . n B 1 147 ASP 147 144 ? ? ? B . n C 2 1 DA 1 1 1 DA DA C . n C 2 2 DA 2 2 2 DA DA C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DC 6 6 6 DC DC C . n C 2 7 DT 7 7 7 DT DT C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DA 9 9 9 DA DA C . n C 2 10 DG 10 10 10 DG DG C . n C 2 11 DC 11 11 11 DC DC C . n C 2 12 DA 12 12 12 DA DA C . n C 2 13 DA 13 13 13 DA DA C . n C 2 14 DG 14 14 14 DG DG C . n C 2 15 DC 15 15 15 DC DC C . n C 2 16 DT 16 16 16 DT DT C . n C 2 17 DA 17 17 17 DA DA C . n C 2 18 DA 18 18 18 DA DA C . n C 2 19 DT 19 19 19 DT DT C . n C 2 20 DT 20 20 20 DT DT C . n C 2 21 DA 21 21 21 DA DA C . n C 2 22 DT 22 22 22 DT DT C . n C 2 23 DA 23 23 23 DA DA C . n D 3 1 DT 1 1 1 DT DT D . n D 3 2 DT 2 2 2 DT DT D . n D 3 3 DA 3 3 3 DA DA D . n D 3 4 DT 4 4 4 DT DT D . n D 3 5 DA 5 5 5 DA DA D . n D 3 6 DA 6 6 6 DA DA D . n D 3 7 DT 7 7 7 DT DT D . n D 3 8 DT 8 8 8 DT DT D . n D 3 9 DA 9 9 9 DA DA D . n D 3 10 DG 10 10 10 DG DG D . n D 3 11 DC 11 11 11 DC DC D . n D 3 12 DT 12 12 12 DT DT D . n D 3 13 DT 13 13 13 DT DT D . n D 3 14 DG 14 14 14 DG DG D . n D 3 15 DC 15 15 15 DC DC D . n D 3 16 DT 16 16 16 DT DT D . n D 3 17 DA 17 17 17 DA DA D . n D 3 18 DA 18 18 18 DA DA D . n D 3 19 DG 19 19 19 DG DG D . n D 3 20 DT 20 20 20 DT DT D . n D 3 21 DT 21 21 21 DT DT D . n D 3 22 DA 22 22 22 DA DA D . n D 3 23 DT 23 23 23 DT DT D . n # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.13 1-Jun-2008 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.6.1_357 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 JBluIce-EPICS . ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 59.566 _cell.length_b 59.566 _cell.length_c 291.177 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3Q5F _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3Q5F _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3Q5F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.74 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;20% PEG 4000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, 2% benzamidine hydrochloride, pH 6.74, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 'sodium chloride' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 1 'benzamidine hydrochloride' ? ? ? 1 6 2 'PEG 4000' ? ? ? 1 7 2 'sodium chloride' ? ? ? 1 8 2 'magnesium chloride' ? ? ? 1 9 2 cacodylate ? ? ? 1 10 2 'benzamidine hydrochloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.20610 1.0 2 1.25494 1.0 3 1.25525 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list '1.20610, 1.25494, 1.25525' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B # _reflns.entry_id 3Q5F _reflns.d_resolution_high 2.96 _reflns.d_resolution_low 50.000 _reflns.number_obs 11205 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_netI_over_sigmaI 10.400 _reflns.pdbx_chi_squared 1.483 _reflns.pdbx_redundancy 12.500 _reflns.percent_possible_obs 94.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.96 3.080 ? ? ? 0.260 ? ? 1.169 7.700 ? 705 63.200 1 1 3.080 3.200 ? ? ? 0.147 ? ? 1.350 8.600 ? 958 83.100 2 1 3.200 3.340 ? ? ? 0.147 ? ? 1.299 10.500 ? 1127 96.900 3 1 3.340 3.520 ? ? ? 0.137 ? ? 1.460 13.200 ? 1156 99.500 4 1 3.520 3.740 ? ? ? 0.146 ? ? 1.367 14.100 ? 1147 99.600 5 1 3.740 4.030 ? ? ? 0.112 ? ? 1.424 14.200 ? 1169 99.700 6 1 4.030 4.440 ? ? ? 0.091 ? ? 1.774 14.100 ? 1166 99.800 7 1 4.440 5.080 ? ? ? 0.071 ? ? 1.417 13.800 ? 1198 100.000 8 1 5.080 6.390 ? ? ? 0.068 ? ? 1.553 13.500 ? 1227 100.000 9 1 6.390 50.000 ? ? ? 0.036 ? ? 1.676 12.200 ? 1352 99.100 10 1 # _refine.entry_id 3Q5F _refine.ls_d_res_high 2.96 _refine.ls_d_res_low 46.0990 _refine.pdbx_ls_sigma_F 0.120 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 89.4400 _refine.ls_number_reflns_obs 10606 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2189 _refine.ls_R_factor_R_work 0.2135 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2662 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_number_reflns_R_free 1060 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 67.2251 _refine.solvent_model_param_bsol 36.1480 _refine.solvent_model_param_ksol 0.3040 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 13.9864 _refine.aniso_B[2][2] 13.9864 _refine.aniso_B[3][3] -27.9729 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 149.780 _refine.B_iso_min 29.710 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2249 _refine_hist.pdbx_number_atoms_nucleic_acid 937 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3186 _refine_hist.d_res_high 2.96 _refine_hist.d_res_low 46.0990 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 3331 0.008 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 4697 1.354 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 551 0.064 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 436 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 1348 22.281 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 POSITIONAL A 1120 0.040 ? 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 2 POSITIONAL B 1120 0.040 ? 2 ? ? ? ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.96 3.0896 8 53.0000 677 . 0.3144 0.4910 . 75 . 752 . . 'X-RAY DIFFRACTION' 3.0896 3.2525 8 78.0000 1014 . 0.2638 0.3512 . 116 . 1130 . . 'X-RAY DIFFRACTION' 3.2525 3.4562 8 92.0000 1194 . 0.2159 0.2895 . 128 . 1322 . . 'X-RAY DIFFRACTION' 3.4562 3.7229 8 95.0000 1257 . 0.2276 0.2986 . 144 . 1401 . . 'X-RAY DIFFRACTION' 3.7229 4.0974 8 98.0000 1268 . 0.2094 0.2688 . 139 . 1407 . . 'X-RAY DIFFRACTION' 4.0974 4.6898 8 98.0000 1322 . 0.1850 0.2320 . 149 . 1471 . . 'X-RAY DIFFRACTION' 4.6898 5.9067 8 99.0000 1340 . 0.1948 0.2571 . 149 . 1489 . . 'X-RAY DIFFRACTION' 5.9067 46.1049 8 99.0000 1474 . 0.1971 0.2216 . 160 . 1634 . . 'X-RAY DIFFRACTION' # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.812060 _struct_ncs_oper.matrix[1][2] -0.582972 _struct_ncs_oper.matrix[1][3] 0.026502 _struct_ncs_oper.matrix[2][1] -0.576007 _struct_ncs_oper.matrix[2][2] 0.793414 _struct_ncs_oper.matrix[2][3] -0.196750 _struct_ncs_oper.matrix[3][1] 0.093672 _struct_ncs_oper.matrix[3][2] -0.175038 _struct_ncs_oper.matrix[3][3] -0.980096 _struct_ncs_oper.vector[1] 21.851400 _struct_ncs_oper.vector[2] 33.825699 _struct_ncs_oper.vector[3] 258.697998 # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A GLU 5 . A SER 145 . A GLU 2 A SER 142 ? 'CHAIN A OR CHAIN C' 1 2 1 B SER 6 . B SER 145 . B SER 3 B SER 142 ? 'CHAIN B OR CHAIN D' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3Q5F _struct.title 'Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q5F _struct_keywords.text 'MarR/SlyA protein family, winged helix-turn-helix, transcriptonal regulator, protein-DNA complex, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SLYA_SALTY P40676 1 ;MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT CASDRRAKRIKLTEKADALIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELHSHD ; 1 ? 2 PDB 3Q5F 3Q5F 2 ? ? ? 3 PDB 3Q5F 3Q5F 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3Q5F A 4 ? 147 ? P40676 1 ? 144 ? 1 144 2 1 3Q5F B 4 ? 147 ? P40676 1 ? 144 ? 1 144 3 2 3Q5F C 1 ? 23 ? 3Q5F 1 ? 23 ? 1 23 4 3 3Q5F D 1 ? 23 ? 3Q5F 1 ? 23 ? 1 23 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3Q5F SER A 1 ? UNP P40676 ? ? 'expression tag' -2 1 1 3Q5F ASN A 2 ? UNP P40676 ? ? 'expression tag' -1 2 1 3Q5F ALA A 3 ? UNP P40676 ? ? 'expression tag' 0 3 1 3Q5F GLU A 100 ? UNP P40676 ASP 97 'SEE REMARK 999' 97 4 1 3Q5F PRO A 101 ? UNP P40676 ALA 98 'SEE REMARK 999' 98 5 2 3Q5F SER B 1 ? UNP P40676 ? ? 'expression tag' -2 6 2 3Q5F ASN B 2 ? UNP P40676 ? ? 'expression tag' -1 7 2 3Q5F ALA B 3 ? UNP P40676 ? ? 'expression tag' 0 8 2 3Q5F GLU B 100 ? UNP P40676 ASP 97 'SEE REMARK 999' 97 9 2 3Q5F PRO B 101 ? UNP P40676 ALA 98 'SEE REMARK 999' 98 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10800 ? 1 MORE -79 ? 1 'SSA (A^2)' 19880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 7 ? LYS A 28 ? PRO A 4 LYS A 25 1 ? 22 HELX_P HELX_P2 2 PRO A 29 ? GLU A 31 ? PRO A 26 GLU A 28 5 ? 3 HELX_P HELX_P3 3 THR A 33 ? HIS A 44 ? THR A 30 HIS A 41 1 ? 12 HELX_P HELX_P4 4 SER A 51 ? GLY A 60 ? SER A 48 GLY A 57 1 ? 10 HELX_P HELX_P5 5 GLU A 62 ? ASP A 75 ? GLU A 59 ASP A 72 1 ? 14 HELX_P HELX_P6 6 LYS A 98 ? LEU A 118 ? LYS A 95 LEU A 115 1 ? 21 HELX_P HELX_P7 7 SER A 122 ? HIS A 144 ? SER A 119 HIS A 141 1 ? 23 HELX_P HELX_P8 8 PRO B 7 ? LYS B 28 ? PRO B 4 LYS B 25 1 ? 22 HELX_P HELX_P9 9 PRO B 29 ? GLU B 31 ? PRO B 26 GLU B 28 5 ? 3 HELX_P HELX_P10 10 THR B 33 ? HIS B 44 ? THR B 30 HIS B 41 1 ? 12 HELX_P HELX_P11 11 SER B 51 ? GLY B 60 ? SER B 48 GLY B 57 1 ? 10 HELX_P HELX_P12 12 GLU B 62 ? ASP B 75 ? GLU B 59 ASP B 72 1 ? 14 HELX_P HELX_P13 13 LYS B 98 ? LEU B 118 ? LYS B 95 LEU B 115 1 ? 21 HELX_P HELX_P14 14 SER B 122 ? HIS B 144 ? SER B 119 HIS B 141 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 23 N3 ? ? C DA 2 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 23 O4 ? ? C DA 2 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 22 N1 ? ? C DT 3 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 22 N6 ? ? C DT 3 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 21 N3 ? ? C DA 4 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 21 O4 ? ? C DA 4 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 20 N3 ? ? C DA 5 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 20 O4 ? ? C DA 5 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 19 N1 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 19 O6 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 19 N2 ? ? C DC 6 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 18 N1 ? ? C DT 7 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 18 N6 ? ? C DT 7 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 17 N1 ? ? C DT 8 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 17 N6 ? ? C DT 8 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 9 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 9 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 15 N3 ? ? C DG 10 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 15 O2 ? ? C DG 10 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 15 N4 ? ? C DG 10 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 14 N1 ? ? C DC 11 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 14 O6 ? ? C DC 11 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 14 N2 ? ? C DC 11 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 13 N3 ? ? C DA 12 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 13 O4 ? ? C DA 12 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 13 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 13 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 13 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 13 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 14 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 14 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 14 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 14 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 14 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 14 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 15 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 15 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 15 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 16 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 16 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 17 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 17 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 17 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 18 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 18 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DA 18 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 18 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 19 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 19 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 19 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 19 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 20 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 20 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DT 20 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 20 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 21 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 21 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 21 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 21 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DT 22 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 22 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DT 22 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 22 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 23 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 23 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DA 23 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 23 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 79 ? THR A 83 ? ILE A 76 THR A 80 A 2 LYS A 91 ? LEU A 95 ? LYS A 88 LEU A 92 B 1 ILE B 79 ? THR B 83 ? ILE B 76 THR B 80 B 2 LYS B 91 ? LEU B 95 ? LYS B 88 LEU B 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 82 ? N GLN A 79 O ARG A 92 ? O ARG A 89 B 1 2 N GLN B 82 ? N GLN B 79 O ARG B 92 ? O ARG B 89 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 86 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 "O4'" _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 DA _pdbx_validate_close_contact.auth_seq_id_2 23 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DA 4 ? ? "C1'" C DA 4 ? ? N9 C DA 4 ? ? 110.66 108.30 2.36 0.30 N 2 1 "O4'" C DC 6 ? ? "C4'" C DC 6 ? ? "C3'" C DC 6 ? ? 101.93 104.50 -2.57 0.40 N 3 1 "C3'" C DG 10 ? ? "C2'" C DG 10 ? ? "C1'" C DG 10 ? ? 95.50 102.40 -6.90 0.80 N 4 1 "O4'" C DG 10 ? ? "C1'" C DG 10 ? ? N9 C DG 10 ? ? 116.35 108.30 8.05 0.30 N 5 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? N1 C DC 11 ? ? 112.55 108.30 4.25 0.30 N 6 1 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 102.15 108.00 -5.85 0.70 N 7 1 "C3'" C DA 13 ? ? "C2'" C DA 13 ? ? "C1'" C DA 13 ? ? 96.80 102.40 -5.60 0.80 N 8 1 "O4'" C DA 13 ? ? "C1'" C DA 13 ? ? "C2'" C DA 13 ? ? 101.04 105.90 -4.86 0.80 N 9 1 "C4'" C DG 14 ? ? "C3'" C DG 14 ? ? "C2'" C DG 14 ? ? 97.60 102.20 -4.60 0.70 N 10 1 "O4'" C DT 16 ? ? "C1'" C DT 16 ? ? N1 C DT 16 ? ? 110.58 108.30 2.28 0.30 N 11 1 "O4'" C DT 20 ? ? "C1'" C DT 20 ? ? N1 C DT 20 ? ? 111.29 108.30 2.99 0.30 N 12 1 N3 C DT 22 ? ? C2 C DT 22 ? ? O2 C DT 22 ? ? 117.46 122.30 -4.84 0.60 N 13 1 "O4'" C DA 23 ? ? "C4'" C DA 23 ? ? "C3'" C DA 23 ? ? 100.56 104.50 -3.94 0.40 N 14 1 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.63 108.30 2.33 0.30 N 15 1 "O4'" D DT 7 ? ? "C4'" D DT 7 ? ? "C3'" D DT 7 ? ? 98.61 104.50 -5.89 0.40 N 16 1 "C1'" D DT 7 ? ? "O4'" D DT 7 ? ? "C4'" D DT 7 ? ? 102.21 110.10 -7.89 1.00 N 17 1 "O4'" D DT 7 ? ? "C1'" D DT 7 ? ? N1 D DT 7 ? ? 103.62 108.00 -4.38 0.70 N 18 1 N3 D DT 7 ? ? C4 D DT 7 ? ? O4 D DT 7 ? ? 123.62 119.90 3.72 0.60 N 19 1 C5 D DT 7 ? ? C4 D DT 7 ? ? O4 D DT 7 ? ? 120.47 124.90 -4.43 0.70 N 20 1 N3 D DT 8 ? ? C4 D DT 8 ? ? O4 D DT 8 ? ? 123.67 119.90 3.77 0.60 N 21 1 "C3'" D DA 9 ? ? "C2'" D DA 9 ? ? "C1'" D DA 9 ? ? 97.49 102.40 -4.91 0.80 N 22 1 "O4'" D DA 9 ? ? "C1'" D DA 9 ? ? N9 D DA 9 ? ? 111.47 108.30 3.17 0.30 N 23 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 112.80 108.30 4.50 0.30 N 24 1 "C4'" D DG 14 ? ? "C3'" D DG 14 ? ? "C2'" D DG 14 ? ? 97.52 102.20 -4.68 0.70 N 25 1 "O4'" D DG 14 ? ? "C1'" D DG 14 ? ? N9 D DG 14 ? ? 103.20 108.00 -4.80 0.70 N 26 1 "C4'" D DT 16 ? ? "C3'" D DT 16 ? ? "C2'" D DT 16 ? ? 96.64 102.20 -5.56 0.70 N 27 1 "C3'" D DT 16 ? ? "C2'" D DT 16 ? ? "C1'" D DT 16 ? ? 96.66 102.40 -5.74 0.80 N 28 1 "C4'" D DA 17 ? ? "C3'" D DA 17 ? ? "C2'" D DA 17 ? ? 97.01 102.20 -5.19 0.70 N 29 1 "C3'" D DA 17 ? ? "C2'" D DA 17 ? ? "C1'" D DA 17 ? ? 96.28 102.40 -6.12 0.80 N 30 1 "C3'" D DA 18 ? ? "C2'" D DA 18 ? ? "C1'" D DA 18 ? ? 96.19 102.40 -6.21 0.80 N 31 1 "O4'" D DA 18 ? ? "C1'" D DA 18 ? ? N9 D DA 18 ? ? 111.94 108.30 3.64 0.30 N 32 1 "O4'" D DG 19 ? ? "C1'" D DG 19 ? ? N9 D DG 19 ? ? 110.34 108.30 2.04 0.30 N 33 1 "O4'" D DT 20 ? ? "C1'" D DT 20 ? ? N1 D DT 20 ? ? 111.88 108.30 3.58 0.30 N 34 1 "C3'" D DA 22 ? ? "C2'" D DA 22 ? ? "C1'" D DA 22 ? ? 96.80 102.40 -5.60 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 41 ? ? -69.18 20.63 2 1 PRO A 45 ? ? -49.88 163.90 3 1 ASP A 46 ? ? 61.21 64.84 4 1 ARG A 85 ? ? -54.05 1.79 5 1 LEU A 115 ? ? -87.26 36.92 6 1 SER A 120 ? ? -45.06 -17.74 7 1 LEU A 140 ? ? -57.96 -9.95 8 1 HIS B 41 ? ? -69.36 19.80 9 1 ARG B 85 ? ? -54.94 1.76 10 1 LYS B 95 ? ? -59.68 -6.27 11 1 LEU B 115 ? ? -85.35 37.08 12 1 SER B 120 ? ? -44.52 -17.51 # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 4.000 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 8323 _diffrn_reflns.pdbx_Rmerge_I_obs 0.111 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.02 _diffrn_reflns.av_sigmaI_over_netI 35.32 _diffrn_reflns.pdbx_redundancy 14.90 _diffrn_reflns.pdbx_percent_possible_obs 98.80 _diffrn_reflns.number 123915 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 8.60 50.00 ? ? 0.053 ? 3.232 14.70 96.70 1 6.84 8.60 ? ? 0.070 ? 2.558 15.50 99.00 1 5.97 6.84 ? ? 0.127 ? 2.071 15.60 99.30 1 5.43 5.97 ? ? 0.152 ? 1.925 15.40 99.40 1 5.04 5.43 ? ? 0.178 ? 1.779 15.50 99.10 1 4.74 5.04 ? ? 0.195 ? 1.759 15.30 99.00 1 4.50 4.74 ? ? 0.215 ? 1.717 15.00 99.00 1 4.31 4.50 ? ? 0.231 ? 1.745 14.30 98.90 1 4.14 4.31 ? ? 0.241 ? 1.636 13.70 99.20 1 4.00 4.14 ? ? 0.287 ? 1.653 13.80 99.00 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 TA 31.972 7.248 8.980 0.93 60.00 2 TA 3.330 29.043 20.066 0.52 60.00 3 TA 0.248 38.777 27.480 0.50 60.00 # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 1000.00 18.26 139 0.700 18.26 11.44 229 0.670 11.44 8.91 289 0.680 8.91 7.55 318 0.730 7.55 6.66 360 0.680 6.66 6.03 383 0.690 6.03 5.54 391 0.610 5.54 5.16 425 0.520 # _pdbx_phasing_dm.entry_id 3Q5F _pdbx_phasing_dm.fom_acentric 0.830 _pdbx_phasing_dm.fom_centric 0.780 _pdbx_phasing_dm.fom 0.820 _pdbx_phasing_dm.reflns_acentric 1661 _pdbx_phasing_dm.reflns_centric 861 _pdbx_phasing_dm.reflns 2522 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 14.300 46.099 ? ? 0.970 0.900 0.920 35 91 126 8.900 14.300 ? ? 0.930 0.900 0.920 200 178 378 7.100 8.900 ? ? 0.910 0.840 0.880 281 161 442 6.300 7.100 ? ? 0.860 0.770 0.830 294 137 431 5.400 6.300 ? ? 0.810 0.680 0.780 522 188 710 5.000 5.400 ? ? 0.710 0.600 0.680 329 106 435 # _phasing.method MAD # _phasing_MAD.entry_id 3Q5F _phasing_MAD.pdbx_d_res_high 5.00 _phasing_MAD.pdbx_d_res_low 1000.00 _phasing_MAD.pdbx_reflns 2534 _phasing_MAD.pdbx_fom 0.650 # _phasing_MAD_clust.expt_id 1 _phasing_MAD_clust.id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id 1 _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.expt_id _phasing_MAD_set.clust_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 1.0000 -17.20 18.32 1 '3 wavelength' 2 1.0000 -23.08 12.43 1 '3 wavelength' 3 1.0000 -11.69 7.70 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # _pdbx_entry_details.entry_id 3Q5F _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHORS STATE THAT THE SEQUENCING EXPERIMENTS OF THE CLONES CONFIRMED THE CODING SEQUENCE AT THESE POSITIONS IS GAGCCG (CORRESPONDING TO GLU-PRO). ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A HIS 143 ? A HIS 146 6 1 Y 1 A ASP 144 ? A ASP 147 7 1 Y 1 B SER -2 ? B SER 1 8 1 Y 1 B ASN -1 ? B ASN 2 9 1 Y 1 B ALA 0 ? B ALA 3 10 1 Y 1 B MET 1 ? B MET 4 11 1 Y 1 B GLU 2 ? B GLU 5 12 1 Y 1 B HIS 143 ? B HIS 146 13 1 Y 1 B ASP 144 ? B ASP 147 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PRO N N N N 390 PRO CA C N S 391 PRO C C N N 392 PRO O O N N 393 PRO CB C N N 394 PRO CG C N N 395 PRO CD C N N 396 PRO OXT O N N 397 PRO H H N N 398 PRO HA H N N 399 PRO HB2 H N N 400 PRO HB3 H N N 401 PRO HG2 H N N 402 PRO HG3 H N N 403 PRO HD2 H N N 404 PRO HD3 H N N 405 PRO HXT H N N 406 SER N N N N 407 SER CA C N S 408 SER C C N N 409 SER O O N N 410 SER CB C N N 411 SER OG O N N 412 SER OXT O N N 413 SER H H N N 414 SER H2 H N N 415 SER HA H N N 416 SER HB2 H N N 417 SER HB3 H N N 418 SER HG H N N 419 SER HXT H N N 420 THR N N N N 421 THR CA C N S 422 THR C C N N 423 THR O O N N 424 THR CB C N R 425 THR OG1 O N N 426 THR CG2 C N N 427 THR OXT O N N 428 THR H H N N 429 THR H2 H N N 430 THR HA H N N 431 THR HB H N N 432 THR HG1 H N N 433 THR HG21 H N N 434 THR HG22 H N N 435 THR HG23 H N N 436 THR HXT H N N 437 TRP N N N N 438 TRP CA C N S 439 TRP C C N N 440 TRP O O N N 441 TRP CB C N N 442 TRP CG C Y N 443 TRP CD1 C Y N 444 TRP CD2 C Y N 445 TRP NE1 N Y N 446 TRP CE2 C Y N 447 TRP CE3 C Y N 448 TRP CZ2 C Y N 449 TRP CZ3 C Y N 450 TRP CH2 C Y N 451 TRP OXT O N N 452 TRP H H N N 453 TRP H2 H N N 454 TRP HA H N N 455 TRP HB2 H N N 456 TRP HB3 H N N 457 TRP HD1 H N N 458 TRP HE1 H N N 459 TRP HE3 H N N 460 TRP HZ2 H N N 461 TRP HZ3 H N N 462 TRP HH2 H N N 463 TRP HXT H N N 464 VAL N N N N 465 VAL CA C N S 466 VAL C C N N 467 VAL O O N N 468 VAL CB C N N 469 VAL CG1 C N N 470 VAL CG2 C N N 471 VAL OXT O N N 472 VAL H H N N 473 VAL H2 H N N 474 VAL HA H N N 475 VAL HB H N N 476 VAL HG11 H N N 477 VAL HG12 H N N 478 VAL HG13 H N N 479 VAL HG21 H N N 480 VAL HG22 H N N 481 VAL HG23 H N N 482 VAL HXT H N N 483 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PRO N CA sing N N 384 PRO N CD sing N N 385 PRO N H sing N N 386 PRO CA C sing N N 387 PRO CA CB sing N N 388 PRO CA HA sing N N 389 PRO C O doub N N 390 PRO C OXT sing N N 391 PRO CB CG sing N N 392 PRO CB HB2 sing N N 393 PRO CB HB3 sing N N 394 PRO CG CD sing N N 395 PRO CG HG2 sing N N 396 PRO CG HG3 sing N N 397 PRO CD HD2 sing N N 398 PRO CD HD3 sing N N 399 PRO OXT HXT sing N N 400 SER N CA sing N N 401 SER N H sing N N 402 SER N H2 sing N N 403 SER CA C sing N N 404 SER CA CB sing N N 405 SER CA HA sing N N 406 SER C O doub N N 407 SER C OXT sing N N 408 SER CB OG sing N N 409 SER CB HB2 sing N N 410 SER CB HB3 sing N N 411 SER OG HG sing N N 412 SER OXT HXT sing N N 413 THR N CA sing N N 414 THR N H sing N N 415 THR N H2 sing N N 416 THR CA C sing N N 417 THR CA CB sing N N 418 THR CA HA sing N N 419 THR C O doub N N 420 THR C OXT sing N N 421 THR CB OG1 sing N N 422 THR CB CG2 sing N N 423 THR CB HB sing N N 424 THR OG1 HG1 sing N N 425 THR CG2 HG21 sing N N 426 THR CG2 HG22 sing N N 427 THR CG2 HG23 sing N N 428 THR OXT HXT sing N N 429 TRP N CA sing N N 430 TRP N H sing N N 431 TRP N H2 sing N N 432 TRP CA C sing N N 433 TRP CA CB sing N N 434 TRP CA HA sing N N 435 TRP C O doub N N 436 TRP C OXT sing N N 437 TRP CB CG sing N N 438 TRP CB HB2 sing N N 439 TRP CB HB3 sing N N 440 TRP CG CD1 doub Y N 441 TRP CG CD2 sing Y N 442 TRP CD1 NE1 sing Y N 443 TRP CD1 HD1 sing N N 444 TRP CD2 CE2 doub Y N 445 TRP CD2 CE3 sing Y N 446 TRP NE1 CE2 sing Y N 447 TRP NE1 HE1 sing N N 448 TRP CE2 CZ2 sing Y N 449 TRP CE3 CZ3 doub Y N 450 TRP CE3 HE3 sing N N 451 TRP CZ2 CH2 doub Y N 452 TRP CZ2 HZ2 sing N N 453 TRP CZ3 CH2 sing Y N 454 TRP CZ3 HZ3 sing N N 455 TRP CH2 HH2 sing N N 456 TRP OXT HXT sing N N 457 VAL N CA sing N N 458 VAL N H sing N N 459 VAL N H2 sing N N 460 VAL CA C sing N N 461 VAL CA CB sing N N 462 VAL CA HA sing N N 463 VAL C O doub N N 464 VAL C OXT sing N N 465 VAL CB CG1 sing N N 466 VAL CB CG2 sing N N 467 VAL CB HB sing N N 468 VAL CG1 HG11 sing N N 469 VAL CG1 HG12 sing N N 470 VAL CG1 HG13 sing N N 471 VAL CG2 HG21 sing N N 472 VAL CG2 HG22 sing N N 473 VAL CG2 HG23 sing N N 474 VAL OXT HXT sing N N 475 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3Q5F 'double helix' 3Q5F 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 2 1_555 D DT 23 1_555 1.153 -0.308 -0.001 0.013 -11.055 12.409 1 C_DA2:DT23_D C 2 ? D 23 ? 20 1 1 C DT 3 1_555 D DA 22 1_555 -1.023 -0.248 0.173 5.614 -4.881 -8.200 2 C_DT3:DA22_D C 3 ? D 22 ? 20 1 1 C DA 4 1_555 D DT 21 1_555 0.907 -0.299 0.023 4.688 -9.316 4.676 3 C_DA4:DT21_D C 4 ? D 21 ? 20 1 1 C DA 5 1_555 D DT 20 1_555 -0.217 -0.343 0.118 5.599 -6.059 8.694 4 C_DA5:DT20_D C 5 ? D 20 ? 20 1 1 C DC 6 1_555 D DG 19 1_555 -0.266 -0.140 0.056 9.847 -12.357 5.320 5 C_DC6:DG19_D C 6 ? D 19 ? 19 1 1 C DT 7 1_555 D DA 18 1_555 -0.181 -0.217 0.216 -3.396 -16.090 -1.256 6 C_DT7:DA18_D C 7 ? D 18 ? 20 1 1 C DT 8 1_555 D DA 17 1_555 0.254 -0.239 -0.002 -2.399 -11.067 1.960 7 C_DT8:DA17_D C 8 ? D 17 ? 20 1 1 C DA 9 1_555 D DT 16 1_555 0.499 -0.328 -0.096 1.925 -1.084 -4.057 8 C_DA9:DT16_D C 9 ? D 16 ? 20 1 1 C DG 10 1_555 D DC 15 1_555 -0.508 -0.366 -0.217 6.899 -12.734 1.660 9 C_DG10:DC15_D C 10 ? D 15 ? 19 1 1 C DC 11 1_555 D DG 14 1_555 0.448 -0.405 0.107 1.206 -17.076 -3.659 10 C_DC11:DG14_D C 11 ? D 14 ? 19 1 1 C DA 12 1_555 D DT 13 1_555 0.671 -0.208 -0.323 -16.208 -3.876 2.369 11 C_DA12:DT13_D C 12 ? D 13 ? 20 1 1 C DA 13 1_555 D DT 12 1_555 0.655 -0.304 0.048 0.078 -1.482 -0.652 12 C_DA13:DT12_D C 13 ? D 12 ? 20 1 1 C DG 14 1_555 D DC 11 1_555 -0.110 -0.205 0.348 -0.379 -16.309 4.637 13 C_DG14:DC11_D C 14 ? D 11 ? 19 1 1 C DC 15 1_555 D DG 10 1_555 0.902 -0.434 0.038 -6.588 -7.391 -1.219 14 C_DC15:DG10_D C 15 ? D 10 ? 19 1 1 C DT 16 1_555 D DA 9 1_555 0.007 -0.084 0.206 1.461 -3.512 -6.562 15 C_DT16:DA9_D C 16 ? D 9 ? 20 1 1 C DA 17 1_555 D DT 8 1_555 -0.084 -0.281 0.175 3.280 -8.969 -2.155 16 C_DA17:DT8_D C 17 ? D 8 ? 20 1 1 C DA 18 1_555 D DT 7 1_555 0.170 -0.390 0.573 6.010 -8.222 2.065 17 C_DA18:DT7_D C 18 ? D 7 ? 20 1 1 C DT 19 1_555 D DA 6 1_555 0.451 -0.402 0.252 -6.010 -7.086 -0.148 18 C_DT19:DA6_D C 19 ? D 6 ? 20 1 1 C DT 20 1_555 D DA 5 1_555 -0.372 -0.099 -0.009 -2.964 -6.354 8.148 19 C_DT20:DA5_D C 20 ? D 5 ? 20 1 1 C DA 21 1_555 D DT 4 1_555 0.018 -0.252 0.058 -6.072 -4.969 5.811 20 C_DA21:DT4_D C 21 ? D 4 ? 20 1 1 C DT 22 1_555 D DA 3 1_555 -0.174 -0.269 0.141 -0.935 -5.914 -2.674 21 C_DT22:DA3_D C 22 ? D 3 ? 20 1 1 C DA 23 1_555 D DT 2 1_555 -0.269 -0.379 -0.212 2.324 -6.513 4.457 22 C_DA23:DT2_D C 23 ? D 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 2 1_555 D DT 23 1_555 C DT 3 1_555 D DA 22 1_555 -0.499 -1.194 3.103 -4.482 -3.111 24.632 -1.839 -0.147 3.264 -7.180 10.345 25.219 1 CC_DA2DT3:DA22DT23_DD C 2 ? D 23 ? C 3 ? D 22 ? 1 C DT 3 1_555 D DA 22 1_555 C DA 4 1_555 D DT 21 1_555 0.595 -0.173 3.356 1.664 3.614 43.395 -0.590 -0.637 3.351 4.875 -2.244 43.568 2 CC_DT3DA4:DT21DA22_DD C 3 ? D 22 ? C 4 ? D 21 ? 1 C DA 4 1_555 D DT 21 1_555 C DA 5 1_555 D DT 20 1_555 -0.361 0.149 3.227 -0.742 7.180 30.860 -1.043 0.525 3.187 13.267 1.370 31.673 3 CC_DA4DA5:DT20DT21_DD C 4 ? D 21 ? C 5 ? D 20 ? 1 C DA 5 1_555 D DT 20 1_555 C DC 6 1_555 D DG 19 1_555 0.292 -0.330 3.218 1.151 0.989 31.357 -0.792 -0.327 3.215 1.829 -2.128 31.392 4 CC_DA5DC6:DG19DT20_DD C 5 ? D 20 ? C 6 ? D 19 ? 1 C DC 6 1_555 D DG 19 1_555 C DT 7 1_555 D DA 18 1_555 0.070 -0.786 3.494 -0.306 5.820 38.131 -1.946 -0.145 3.342 8.846 0.464 38.557 5 CC_DC6DT7:DA18DG19_DD C 6 ? D 19 ? C 7 ? D 18 ? 1 C DT 7 1_555 D DA 18 1_555 C DT 8 1_555 D DA 17 1_555 0.008 -0.350 3.251 1.658 -3.109 36.616 -0.132 0.212 3.266 -4.934 -2.631 36.780 6 CC_DT7DT8:DA17DA18_DD C 7 ? D 18 ? C 8 ? D 17 ? 1 C DT 8 1_555 D DA 17 1_555 C DA 9 1_555 D DT 16 1_555 -0.101 -0.076 3.203 1.431 4.077 35.640 -0.694 0.364 3.169 6.631 -2.328 35.892 7 CC_DT8DA9:DT16DA17_DD C 8 ? D 17 ? C 9 ? D 16 ? 1 C DA 9 1_555 D DT 16 1_555 C DG 10 1_555 D DC 15 1_555 0.833 -0.409 3.334 -0.102 9.088 24.985 -3.280 -1.839 2.998 20.173 0.227 26.562 8 CC_DA9DG10:DC15DT16_DD C 9 ? D 16 ? C 10 ? D 15 ? 1 C DG 10 1_555 D DC 15 1_555 C DC 11 1_555 D DG 14 1_555 -0.702 -0.963 3.324 -5.646 4.202 42.668 -1.726 0.392 3.281 5.728 7.697 43.218 9 CC_DG10DC11:DG14DC15_DD C 10 ? D 15 ? C 11 ? D 14 ? 1 C DC 11 1_555 D DG 14 1_555 C DA 12 1_555 D DT 13 1_555 0.124 -0.117 3.671 6.539 4.998 41.772 -0.730 0.573 3.613 6.929 -9.065 42.540 10 CC_DC11DA12:DT13DG14_DD C 11 ? D 14 ? C 12 ? D 13 ? 1 C DA 12 1_555 D DT 13 1_555 C DA 13 1_555 D DT 12 1_555 -0.292 0.729 3.048 -4.301 10.051 23.552 -1.117 -0.523 3.098 23.096 9.882 25.933 11 CC_DA12DA13:DT12DT13_DD C 12 ? D 13 ? C 13 ? D 12 ? 1 C DA 13 1_555 D DT 12 1_555 C DG 14 1_555 D DC 11 1_555 -0.252 -0.425 3.252 -4.920 -0.691 32.506 -0.633 -0.398 3.262 -1.225 8.726 32.873 12 CC_DA13DG14:DC11DT12_DD C 13 ? D 12 ? C 14 ? D 11 ? 1 C DG 14 1_555 D DC 11 1_555 C DC 15 1_555 D DG 10 1_555 0.292 -0.826 3.418 3.516 3.565 42.377 -1.508 -0.034 3.353 4.911 -4.844 42.658 13 CC_DG14DC15:DG10DC11_DD C 14 ? D 11 ? C 15 ? D 10 ? 1 C DC 15 1_555 D DG 10 1_555 C DT 16 1_555 D DA 9 1_555 -0.864 -0.682 3.212 -0.315 7.860 26.030 -3.338 1.764 2.895 16.964 0.680 27.173 14 CC_DC15DT16:DA9DG10_DD C 15 ? D 10 ? C 16 ? D 9 ? 1 C DT 16 1_555 D DA 9 1_555 C DA 17 1_555 D DT 8 1_555 0.073 -0.436 3.181 0.539 3.040 34.315 -1.193 -0.042 3.132 5.140 -0.912 34.449 15 CC_DT16DA17:DT8DA9_DD C 16 ? D 9 ? C 17 ? D 8 ? 1 C DA 17 1_555 D DT 8 1_555 C DA 18 1_555 D DT 7 1_555 0.489 -0.507 3.179 -3.432 -1.949 36.669 -0.546 -1.224 3.144 -3.086 5.435 36.874 16 CC_DA17DA18:DT7DT8_DD C 17 ? D 8 ? C 18 ? D 7 ? 1 C DA 18 1_555 D DT 7 1_555 C DT 19 1_555 D DA 6 1_555 -0.720 -1.173 3.580 1.344 0.160 36.900 -1.875 1.334 3.547 0.253 -2.123 36.924 17 CC_DA18DT19:DA6DT7_DD C 18 ? D 7 ? C 19 ? D 6 ? 1 C DT 19 1_555 D DA 6 1_555 C DT 20 1_555 D DA 5 1_555 0.095 -0.639 3.170 1.922 4.924 26.224 -2.599 0.270 3.001 10.713 -4.182 26.742 18 CC_DT19DT20:DA5DA6_DD C 19 ? D 6 ? C 20 ? D 5 ? 1 C DT 20 1_555 D DA 5 1_555 C DA 21 1_555 D DT 4 1_555 0.319 0.623 3.369 -2.874 7.472 42.068 0.074 -0.736 3.398 10.297 3.961 42.789 19 CC_DT20DA21:DT4DA5_DD C 20 ? D 5 ? C 21 ? D 4 ? 1 C DA 21 1_555 D DT 4 1_555 C DT 22 1_555 D DA 3 1_555 -0.312 -0.713 3.220 -1.589 -2.018 34.911 -0.885 0.282 3.266 -3.358 2.644 35.002 20 CC_DA21DT22:DA3DT4_DD C 21 ? D 4 ? C 22 ? D 3 ? 1 C DT 22 1_555 D DA 3 1_555 C DA 23 1_555 D DT 2 1_555 -0.132 -0.130 3.259 2.200 -3.218 35.194 0.259 0.539 3.244 -5.302 -3.625 35.403 21 CC_DT22DA23:DT2DA3_DD C 22 ? D 3 ? C 23 ? D 2 ? # _atom_sites.entry_id 3Q5F _atom_sites.fract_transf_matrix[1][1] 0.016788 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016788 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003434 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_