HEADER TRANSCRIPTION/DNA/ANTIBIOTIC 29-DEC-10 3Q5P TITLE CRYSTAL STRUCTURE OF BMRR BOUND TO TETRACYCLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIDRUG-EFFLUX TRANSPORTER 1 REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 23 BP BMRR PROMOTER DNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BMRR, BMR1R, BSU24020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: 23 BP PROMOTER OF BMR EFFLUX PUMP GENE SYNTHESIZED BY SOURCE 10 IDT KEYWDS MULTIDRUG BINDING, MULTIDRUG RESISTANCE, TRANSCRIPTION REGULATOR, KEYWDS 2 TRANSCRIPTION-DNA-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BACHAS,C.EGINTON,G.GUNIO,H.WADE REVDAT 5 21-FEB-24 3Q5P 1 REMARK SEQADV REVDAT 4 17-JUL-19 3Q5P 1 REMARK REVDAT 3 08-NOV-17 3Q5P 1 REMARK REVDAT 2 20-JUL-11 3Q5P 1 JRNL REVDAT 1 15-JUN-11 3Q5P 0 JRNL AUTH S.BACHAS,C.EGINTON,D.GUNIO,H.WADE JRNL TITL STRUCTURAL CONTRIBUTIONS TO MULTIDRUG RECOGNITION IN THE JRNL TITL 2 MULTIDRUG RESISTANCE (MDR) GENE REGULATOR, BMRR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 11046 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21690368 JRNL DOI 10.1073/PNAS.1104850108 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 3 NUMBER OF REFLECTIONS : 15979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0884 - 5.3436 0.98 3035 186 0.2070 0.2615 REMARK 3 2 5.3436 - 4.2426 0.98 2908 127 0.1656 0.1874 REMARK 3 3 4.2426 - 3.7066 0.92 2714 120 0.2028 0.2410 REMARK 3 4 3.7066 - 3.3679 0.89 2563 131 0.2674 0.3297 REMARK 3 5 3.3679 - 3.1265 0.82 2347 139 0.2952 0.2914 REMARK 3 6 3.1265 - 2.9423 0.56 1637 72 0.3679 0.5431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 55.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11450 REMARK 3 B22 (A**2) : 0.11450 REMARK 3 B33 (A**2) : -0.22910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2930 REMARK 3 ANGLE : 1.391 3926 REMARK 3 CHIRALITY : 0.079 445 REMARK 3 PLANARITY : 0.005 421 REMARK 3 DIHEDRAL : 22.694 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:87) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5248 -12.9632 19.1546 REMARK 3 T TENSOR REMARK 3 T11: 0.4923 T22: 0.4824 REMARK 3 T33: 0.4866 T12: 0.0437 REMARK 3 T13: -0.0148 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 0.8681 L22: 0.3420 REMARK 3 L33: 0.7083 L12: 0.1735 REMARK 3 L13: -0.5031 L23: 0.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.2031 S13: 0.0539 REMARK 3 S21: -0.0244 S22: -0.0897 S23: -0.0608 REMARK 3 S31: 0.1037 S32: -0.2545 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 88:116) REMARK 3 ORIGIN FOR THE GROUP (A): 68.4604 5.9940 45.2954 REMARK 3 T TENSOR REMARK 3 T11: 0.7833 T22: 0.5160 REMARK 3 T33: 0.7344 T12: 0.0662 REMARK 3 T13: -0.0814 T23: -0.1048 REMARK 3 L TENSOR REMARK 3 L11: 0.1357 L22: -0.0065 REMARK 3 L33: 0.0925 L12: -0.0780 REMARK 3 L13: 0.1303 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: -0.3006 S12: -0.1893 S13: -0.0943 REMARK 3 S21: -0.1729 S22: -0.3140 S23: 0.1459 REMARK 3 S31: -1.1817 S32: -0.5104 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 152:169) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5673 19.4653 49.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.5201 T22: 0.4524 REMARK 3 T33: 0.7378 T12: -0.0866 REMARK 3 T13: 0.0851 T23: -0.1351 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.1764 REMARK 3 L33: 0.0263 L12: 0.0204 REMARK 3 L13: 0.0043 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.2676 S12: 0.2144 S13: -0.8796 REMARK 3 S21: 0.3567 S22: 0.1446 S23: 0.5618 REMARK 3 S31: 0.0064 S32: -0.9392 S33: 0.0037 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 170:277) REMARK 3 ORIGIN FOR THE GROUP (A): 69.3650 23.9701 65.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.4999 T22: 0.5593 REMARK 3 T33: 0.4567 T12: 0.0153 REMARK 3 T13: -0.0110 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.5218 L22: 1.1362 REMARK 3 L33: 0.8252 L12: 0.9007 REMARK 3 L13: -0.1252 L23: 0.2682 REMARK 3 S TENSOR REMARK 3 S11: 0.1061 S12: -0.1575 S13: -0.1312 REMARK 3 S21: 0.0929 S22: -0.2282 S23: -0.0179 REMARK 3 S31: 0.0628 S32: 0.1745 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID -12:1) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7810 -16.0003 33.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.8039 T22: 0.7904 REMARK 3 T33: 0.7901 T12: -0.0838 REMARK 3 T13: 0.0002 T23: -0.2635 REMARK 3 L TENSOR REMARK 3 L11: 0.2301 L22: 0.0316 REMARK 3 L33: 0.1205 L12: 0.1823 REMARK 3 L13: -0.1469 L23: -0.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.4540 S12: -0.5160 S13: 0.0350 REMARK 3 S21: 0.5930 S22: -0.8625 S23: 0.1623 REMARK 3 S31: 0.5335 S32: -0.8542 S33: 0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8259 18.3120 40.6257 REMARK 3 T TENSOR REMARK 3 T11: 0.6692 T22: 1.0332 REMARK 3 T33: 0.7253 T12: 0.2556 REMARK 3 T13: -0.1766 T23: -0.2553 REMARK 3 L TENSOR REMARK 3 L11: 0.2922 L22: 0.0277 REMARK 3 L33: 0.1003 L12: 0.0382 REMARK 3 L13: 0.2273 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.6795 S12: 0.3109 S13: 1.0704 REMARK 3 S21: -0.7936 S22: -0.8931 S23: -0.8204 REMARK 3 S31: 0.1448 S32: -0.6099 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3Q5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000063226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.942 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM MALONATE 0.05% JEFFAMINE REMARK 280 PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.08250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.62375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.54125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.08250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.54125 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.62375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.08250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 SER A 99 OG REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 TYR A 118 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 PHE A 125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ILE A 200 CG1 CG2 CD1 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 33 CD PRO A 33 N -0.087 REMARK 500 DC B -8 O3' DC B -8 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 202 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 DC B -10 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC B -9 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT B -7 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC B -3 O4' - C1' - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 DT B -2 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT B -2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 1 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DA B 2 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG B 5 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 16.32 54.82 REMARK 500 ASN A 168 -160.12 -166.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAC A 7101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3968 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D6Y RELATED DB: PDB REMARK 900 RELATED ID: 3D6Z RELATED DB: PDB REMARK 900 RELATED ID: 3Q1M RELATED DB: PDB REMARK 900 RELATED ID: 3Q2Y RELATED DB: PDB REMARK 900 RELATED ID: 3Q5R RELATED DB: PDB REMARK 900 RELATED ID: 3Q5S RELATED DB: PDB DBREF 3Q5P A 1 278 UNP P39075 BMRR_BACSU 1 278 DBREF 3Q5P B -12 12 PDB 3Q5P 3Q5P -12 12 SEQADV 3Q5P LEU A 142 UNP P39075 ILE 142 CONFLICT SEQADV 3Q5P LEU A 277 UNP P39075 ALA 277 CONFLICT SEQADV 3Q5P ASP A 278 UNP P39075 GLU 278 CONFLICT SEQRES 1 A 278 MET LYS GLU SER TYR TYR SER ILE GLY GLU VAL SER LYS SEQRES 2 A 278 LEU ALA ASN VAL SER ILE LYS ALA LEU ARG TYR TYR ASP SEQRES 3 A 278 LYS ILE ASP LEU PHE LYS PRO ALA TYR VAL ASP PRO ASP SEQRES 4 A 278 THR SER TYR ARG TYR TYR THR ASP SER GLN LEU ILE HIS SEQRES 5 A 278 LEU ASP LEU ILE LYS SER LEU LYS TYR ILE GLY THR PRO SEQRES 6 A 278 LEU GLU GLU MET LYS LYS ALA GLN ASP LEU GLU MET GLU SEQRES 7 A 278 GLU LEU PHE ALA PHE TYR THR GLU GLN GLU ARG GLN ILE SEQRES 8 A 278 ARG GLU LYS LEU ASP PHE LEU SER ALA LEU GLU GLN THR SEQRES 9 A 278 ILE SER LEU VAL LYS LYS ARG MET LYS ARG GLN MET GLU SEQRES 10 A 278 TYR PRO ALA LEU GLY GLU VAL PHE VAL LEU ASP GLU GLU SEQRES 11 A 278 GLU ILE ARG ILE ILE GLN THR GLU ALA GLU GLY LEU GLY SEQRES 12 A 278 PRO GLU ASN VAL LEU ASN ALA SER TYR SER LYS LEU LYS SEQRES 13 A 278 LYS PHE ILE GLU SER ALA ASP GLY PHE THR ASN ASN SER SEQRES 14 A 278 TYR GLY ALA THR PHE SER PHE GLN PRO TYR THR SER ILE SEQRES 15 A 278 ASP GLU MET THR TYR ARG HIS ILE PHE THR PRO VAL LEU SEQRES 16 A 278 THR ASN LYS GLN ILE SER SER ILE THR PRO ASP MET GLU SEQRES 17 A 278 ILE THR THR ILE PRO LYS GLY ARG TYR ALA CYS ILE ALA SEQRES 18 A 278 TYR ASN PHE SER PRO GLU HIS TYR PHE LEU ASN LEU GLN SEQRES 19 A 278 LYS LEU ILE LYS TYR ILE ALA ASP ARG GLN LEU THR VAL SEQRES 20 A 278 VAL SER ASP VAL TYR GLU LEU ILE ILE PRO ILE HIS TYR SEQRES 21 A 278 SER PRO LYS LYS GLN GLU GLU TYR ARG VAL GLU MET LYS SEQRES 22 A 278 ILE ARG ILE LEU ASP SEQRES 1 B 23 DG DA DC DC DC DT DC DC DC DC DT DT DA SEQRES 2 B 23 DG DG DG DG DA DG DG DG DT DC HET TAC A7101 32 HET GOL A3968 6 HET GOL B3968 6 HETNAM TAC TETRACYCLINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TAC C22 H24 N2 O8 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *15(H2 O) HELIX 1 1 ILE A 8 ASN A 16 1 9 HELIX 2 2 SER A 18 ILE A 28 1 11 HELIX 3 3 ASP A 47 LEU A 50 5 4 HELIX 4 4 ILE A 51 GLY A 63 1 13 HELIX 5 5 PRO A 65 ASP A 74 1 10 HELIX 6 6 GLU A 76 MET A 116 1 41 HELIX 7 7 LEU A 148 SER A 151 5 4 HELIX 8 8 TYR A 152 GLY A 164 1 13 HELIX 9 9 SER A 181 MET A 185 5 5 HELIX 10 10 SER A 225 GLN A 244 1 20 SHEET 1 A 3 TYR A 6 SER A 7 0 SHEET 2 A 3 ARG A 43 TYR A 45 -1 O TYR A 45 N TYR A 6 SHEET 3 A 3 TYR A 35 VAL A 36 -1 N TYR A 35 O TYR A 44 SHEET 1 B 8 VAL A 124 GLU A 129 0 SHEET 2 B 8 GLY A 215 ASN A 223 -1 O CYS A 219 N PHE A 125 SHEET 3 B 8 TYR A 268 ILE A 276 -1 O VAL A 270 N TYR A 222 SHEET 4 B 8 VAL A 251 PRO A 257 -1 N TYR A 252 O LYS A 273 SHEET 5 B 8 TYR A 170 PHE A 174 -1 N PHE A 174 O VAL A 251 SHEET 6 B 8 TYR A 187 PRO A 193 -1 O HIS A 189 N THR A 173 SHEET 7 B 8 ILE A 132 LEU A 142 -1 N ALA A 139 O ARG A 188 SHEET 8 B 8 MET A 207 ILE A 212 -1 O ILE A 212 N ILE A 132 SITE 1 AC1 12 ILE A 51 PRO A 144 VAL A 147 ASN A 149 SITE 2 AC1 12 TYR A 152 ILE A 182 TYR A 187 PHE A 224 SITE 3 AC1 12 TYR A 229 GLU A 253 ILE A 255 TYR A 268 SITE 1 AC2 6 GLU A 131 ARG A 133 VAL A 194 LEU A 195 SITE 2 AC2 6 THR A 196 ASN A 197 SITE 1 AC3 2 DG B -12 HOH B 13 CRYST1 106.676 106.676 146.165 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006842 0.00000