HEADER PROTEIN BINDING 03-JAN-11 3Q6P TITLE SALIVARY PROTEIN FROM LUTZOMYIA LONGIPALPIS. SELENOMETHIONINE TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 43.2 KDA SALIVARY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-399; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUTZOMYIA LONGIPALPIS; SOURCE 3 ORGANISM_COMMON: SAND FLY; SOURCE 4 ORGANISM_TAXID: 7200; SOURCE 5 GENE: LJM-11, LJM11_CLU9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS LIGAND BINDING PROTEIN, BETA PROPELLER, LIGAND BINDING, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.F.ANDERSEN,X.XU,B.W.CHANG,N.COLLIN,J.G.VALENZUELA,J.M.RIBEIRO REVDAT 3 23-OCT-19 3Q6P 1 JRNL LINK REVDAT 2 08-NOV-17 3Q6P 1 REMARK REVDAT 1 27-JUL-11 3Q6P 0 JRNL AUTH X.XU,F.OLIVEIRA,B.W.CHANG,N.COLLIN,R.GOMES,C.TEIXEIRA, JRNL AUTH 2 D.REYNOSO,V.MY PHAM,D.E.ELNAIEM,S.KAMHAWI,J.M.RIBEIRO, JRNL AUTH 3 J.G.VALENZUELA,J.F.ANDERSEN JRNL TITL STRUCTURE AND FUNCTION OF A "YELLOW" PROTEIN FROM SALIVA OF JRNL TITL 2 THE SAND FLY LUTZOMYIA LONGIPALPIS THAT CONFERS PROTECTIVE JRNL TITL 3 IMMUNITY AGAINST LEISHMANIA MAJOR INFECTION. JRNL REF J.BIOL.CHEM. V. 286 32383 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21795673 JRNL DOI 10.1074/JBC.M111.268904 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.965 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6292 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8517 ; 1.396 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 6.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;36.163 ;23.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;17.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 884 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4850 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3796 ; 0.590 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6132 ; 1.165 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2496 ; 1.791 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2385 ; 3.014 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 381 REMARK 3 RESIDUE RANGE : A 382 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 82.9907 13.2546 31.8762 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.0900 REMARK 3 T33: 0.2159 T12: 0.1400 REMARK 3 T13: -0.1838 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 0.8924 L22: 1.6280 REMARK 3 L33: 0.9037 L12: 0.0267 REMARK 3 L13: 0.1410 L23: -0.1901 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.0496 S13: -0.0210 REMARK 3 S21: 0.2246 S22: 0.1601 S23: -0.1235 REMARK 3 S31: 0.0416 S32: 0.0826 S33: -0.1167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 381 REMARK 3 RESIDUE RANGE : B 382 B 382 REMARK 3 RESIDUE RANGE : B 383 B 414 REMARK 3 ORIGIN FOR THE GROUP (A): 84.0878 -30.7649 12.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.4599 T22: 0.0715 REMARK 3 T33: 0.2371 T12: 0.1728 REMARK 3 T13: 0.0858 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.9034 L22: 0.7395 REMARK 3 L33: 1.3023 L12: -0.2054 REMARK 3 L13: -0.1797 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: -0.2286 S12: -0.0452 S13: -0.0017 REMARK 3 S21: -0.0575 S22: -0.0326 S23: 0.0204 REMARK 3 S31: 0.0648 S32: 0.0591 S33: 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 6000, 0.1 M SODIUM CITRATE, 6 REMARK 280 MM NICKEL CHLORIDE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 165.95600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.97800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.95600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.97800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 165.95600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.97800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 165.95600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.97800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 90 OE2 GLU B 109 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 62 37.60 -92.41 REMARK 500 SER A 63 -53.88 -139.82 REMARK 500 SER A 112 -173.82 57.97 REMARK 500 ARG A 113 37.61 74.92 REMARK 500 ALA A 115 -26.50 -37.09 REMARK 500 ARG A 140 99.40 -160.24 REMARK 500 GLU A 149 69.41 -150.49 REMARK 500 LYS A 150 66.71 67.44 REMARK 500 LYS A 165 50.30 -98.43 REMARK 500 LEU A 179 -78.05 -80.32 REMARK 500 ASP A 231 -166.19 -77.63 REMARK 500 SER A 244 72.95 -102.83 REMARK 500 LEU A 268 18.46 -159.77 REMARK 500 ASP A 276 133.74 -34.69 REMARK 500 PHE A 325 94.44 53.84 REMARK 500 ALA A 376 -9.91 -58.62 REMARK 500 LEU B 64 -75.04 -41.13 REMARK 500 SER B 112 -177.38 57.04 REMARK 500 ARG B 113 36.13 78.61 REMARK 500 ALA B 115 -15.08 -48.65 REMARK 500 ASN B 163 58.71 -115.90 REMARK 500 SER B 244 68.74 -103.56 REMARK 500 LYS B 273 128.96 -37.50 REMARK 500 ASP B 276 126.12 -28.68 REMARK 500 PHE B 325 86.72 61.16 REMARK 500 LYS B 349 1.08 82.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 113 GLY A 114 -36.22 REMARK 500 PRO B 49 ARG B 50 -32.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q6K RELATED DB: PDB REMARK 900 RELATED ID: 3Q6T RELATED DB: PDB DBREF 3Q6P A 1 381 UNP Q5WPU9 Q5WPU9_LUTLO 19 399 DBREF 3Q6P B 1 381 UNP Q5WPU9 Q5WPU9_LUTLO 19 399 SEQRES 1 A 381 ALA ASP THR GLN GLY TYR LYS TRP LYS GLN LEU LEU TYR SEQRES 2 A 381 ASN ASN VAL THR PRO GLY SER TYR ASN PRO ASP ASN MSE SEQRES 3 A 381 ILE SER THR ALA PHE ALA TYR ASP ALA GLU GLY GLU LYS SEQRES 4 A 381 LEU PHE LEU ALA VAL PRO ARG LYS LEU PRO ARG VAL PRO SEQRES 5 A 381 TYR THR LEU ALA GLU VAL ASP THR LYS ASN SER LEU GLY SEQRES 6 A 381 VAL LYS GLY LYS HIS SER PRO LEU LEU ASN LYS PHE SER SEQRES 7 A 381 GLY HIS LYS THR GLY LYS GLU LEU THR SER ILE TYR GLN SEQRES 8 A 381 PRO VAL ILE ASP ASP CYS ARG ARG LEU TRP VAL VAL ASP SEQRES 9 A 381 ILE GLY SER VAL GLU TYR ARG SER ARG GLY ALA LYS ASP SEQRES 10 A 381 TYR PRO SER HIS ARG PRO ALA ILE VAL ALA TYR ASP LEU SEQRES 11 A 381 LYS GLN PRO ASN TYR PRO GLU VAL VAL ARG TYR TYR PHE SEQRES 12 A 381 PRO THR ARG LEU VAL GLU LYS PRO THR TYR PHE GLY GLY SEQRES 13 A 381 PHE ALA VAL ASP VAL ALA ASN PRO LYS GLY ASP CYS SER SEQRES 14 A 381 GLU THR PHE VAL TYR ILE THR ASN PHE LEU ARG GLY ALA SEQRES 15 A 381 LEU PHE ILE TYR ASP HIS LYS LYS GLN ASP SER TRP ASN SEQRES 16 A 381 VAL THR HIS PRO THR PHE LYS ALA GLU ARG PRO THR LYS SEQRES 17 A 381 PHE ASP TYR GLY GLY LYS GLU TYR GLU PHE LYS ALA GLY SEQRES 18 A 381 ILE PHE GLY ILE THR LEU GLY ASP ARG ASP SER GLU GLY SEQRES 19 A 381 ASN ARG PRO ALA TYR TYR LEU ALA GLY SER ALA ILE LYS SEQRES 20 A 381 VAL TYR SER VAL ASN THR LYS GLU LEU LYS GLN LYS GLY SEQRES 21 A 381 GLY LYS LEU ASN PRO GLU LEU LEU GLY ASN ARG GLY LYS SEQRES 22 A 381 TYR ASN ASP ALA ILE ALA LEU ALA TYR ASP PRO LYS THR SEQRES 23 A 381 LYS VAL ILE PHE PHE ALA GLU ALA ASN THR LYS GLN VAL SEQRES 24 A 381 SER CYS TRP ASN THR GLN LYS MSE PRO LEU ARG MSE LYS SEQRES 25 A 381 ASN THR ASP VAL VAL TYR THR SER SER ARG PHE VAL PHE SEQRES 26 A 381 GLY THR ASP ILE SER VAL ASP SER LYS GLY GLY LEU TRP SEQRES 27 A 381 PHE MSE SER ASN GLY PHE PRO PRO ILE ARG LYS SER GLU SEQRES 28 A 381 LYS PHE LYS TYR ASP PHE PRO ARG TYR ARG LEU MSE ARG SEQRES 29 A 381 ILE MSE ASP THR GLN GLU ALA ILE ALA GLY THR ALA CYS SEQRES 30 A 381 ASP MSE ASN ALA SEQRES 1 B 381 ALA ASP THR GLN GLY TYR LYS TRP LYS GLN LEU LEU TYR SEQRES 2 B 381 ASN ASN VAL THR PRO GLY SER TYR ASN PRO ASP ASN MSE SEQRES 3 B 381 ILE SER THR ALA PHE ALA TYR ASP ALA GLU GLY GLU LYS SEQRES 4 B 381 LEU PHE LEU ALA VAL PRO ARG LYS LEU PRO ARG VAL PRO SEQRES 5 B 381 TYR THR LEU ALA GLU VAL ASP THR LYS ASN SER LEU GLY SEQRES 6 B 381 VAL LYS GLY LYS HIS SER PRO LEU LEU ASN LYS PHE SER SEQRES 7 B 381 GLY HIS LYS THR GLY LYS GLU LEU THR SER ILE TYR GLN SEQRES 8 B 381 PRO VAL ILE ASP ASP CYS ARG ARG LEU TRP VAL VAL ASP SEQRES 9 B 381 ILE GLY SER VAL GLU TYR ARG SER ARG GLY ALA LYS ASP SEQRES 10 B 381 TYR PRO SER HIS ARG PRO ALA ILE VAL ALA TYR ASP LEU SEQRES 11 B 381 LYS GLN PRO ASN TYR PRO GLU VAL VAL ARG TYR TYR PHE SEQRES 12 B 381 PRO THR ARG LEU VAL GLU LYS PRO THR TYR PHE GLY GLY SEQRES 13 B 381 PHE ALA VAL ASP VAL ALA ASN PRO LYS GLY ASP CYS SER SEQRES 14 B 381 GLU THR PHE VAL TYR ILE THR ASN PHE LEU ARG GLY ALA SEQRES 15 B 381 LEU PHE ILE TYR ASP HIS LYS LYS GLN ASP SER TRP ASN SEQRES 16 B 381 VAL THR HIS PRO THR PHE LYS ALA GLU ARG PRO THR LYS SEQRES 17 B 381 PHE ASP TYR GLY GLY LYS GLU TYR GLU PHE LYS ALA GLY SEQRES 18 B 381 ILE PHE GLY ILE THR LEU GLY ASP ARG ASP SER GLU GLY SEQRES 19 B 381 ASN ARG PRO ALA TYR TYR LEU ALA GLY SER ALA ILE LYS SEQRES 20 B 381 VAL TYR SER VAL ASN THR LYS GLU LEU LYS GLN LYS GLY SEQRES 21 B 381 GLY LYS LEU ASN PRO GLU LEU LEU GLY ASN ARG GLY LYS SEQRES 22 B 381 TYR ASN ASP ALA ILE ALA LEU ALA TYR ASP PRO LYS THR SEQRES 23 B 381 LYS VAL ILE PHE PHE ALA GLU ALA ASN THR LYS GLN VAL SEQRES 24 B 381 SER CYS TRP ASN THR GLN LYS MSE PRO LEU ARG MSE LYS SEQRES 25 B 381 ASN THR ASP VAL VAL TYR THR SER SER ARG PHE VAL PHE SEQRES 26 B 381 GLY THR ASP ILE SER VAL ASP SER LYS GLY GLY LEU TRP SEQRES 27 B 381 PHE MSE SER ASN GLY PHE PRO PRO ILE ARG LYS SER GLU SEQRES 28 B 381 LYS PHE LYS TYR ASP PHE PRO ARG TYR ARG LEU MSE ARG SEQRES 29 B 381 ILE MSE ASP THR GLN GLU ALA ILE ALA GLY THR ALA CYS SEQRES 30 B 381 ASP MSE ASN ALA MODRES 3Q6P MSE A 26 MET SELENOMETHIONINE MODRES 3Q6P MSE A 307 MET SELENOMETHIONINE MODRES 3Q6P MSE A 311 MET SELENOMETHIONINE MODRES 3Q6P MSE A 340 MET SELENOMETHIONINE MODRES 3Q6P MSE A 363 MET SELENOMETHIONINE MODRES 3Q6P MSE A 366 MET SELENOMETHIONINE MODRES 3Q6P MSE A 379 MET SELENOMETHIONINE MODRES 3Q6P MSE B 26 MET SELENOMETHIONINE MODRES 3Q6P MSE B 307 MET SELENOMETHIONINE MODRES 3Q6P MSE B 311 MET SELENOMETHIONINE MODRES 3Q6P MSE B 340 MET SELENOMETHIONINE MODRES 3Q6P MSE B 363 MET SELENOMETHIONINE MODRES 3Q6P MSE B 366 MET SELENOMETHIONINE MODRES 3Q6P MSE B 379 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 307 8 HET MSE A 311 8 HET MSE A 340 8 HET MSE A 363 8 HET MSE A 366 8 HET MSE A 379 8 HET MSE B 26 8 HET MSE B 307 8 HET MSE B 311 8 HET MSE B 340 8 HET MSE B 363 8 HET MSE B 366 8 HET MSE B 379 8 HET CIT B 382 13 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *65(H2 O) HELIX 1 1 ASN A 22 MSE A 26 5 5 HELIX 2 2 GLY A 114 TYR A 118 5 5 HELIX 3 3 PRO A 144 VAL A 148 5 5 HELIX 4 4 LYS A 150 THR A 152 5 3 HELIX 5 5 PRO A 199 LYS A 202 5 4 HELIX 6 6 THR A 253 GLN A 258 1 6 HELIX 7 7 ARG A 310 LYS A 312 5 3 HELIX 8 8 LYS A 349 PHE A 353 5 5 HELIX 9 9 ASP A 367 ALA A 373 1 7 HELIX 10 10 ASN B 22 MSE B 26 5 5 HELIX 11 11 GLY B 114 TYR B 118 5 5 HELIX 12 12 PRO B 144 VAL B 148 5 5 HELIX 13 13 LYS B 150 THR B 152 5 3 HELIX 14 14 HIS B 198 LYS B 202 5 5 HELIX 15 15 THR B 253 LYS B 257 1 5 HELIX 16 16 ARG B 310 LYS B 312 5 3 HELIX 17 17 LYS B 349 PHE B 353 5 5 HELIX 18 18 ASP B 367 ILE B 372 1 6 SHEET 1 A 4 THR A 3 TRP A 8 0 SHEET 2 A 4 TYR A 360 ILE A 365 -1 O LEU A 362 N TYR A 6 SHEET 3 A 4 LEU A 337 SER A 341 -1 N PHE A 339 O MSE A 363 SHEET 4 A 4 GLY A 326 VAL A 331 -1 N THR A 327 O MSE A 340 SHEET 1 B 4 ALA A 30 ASP A 34 0 SHEET 2 B 4 LYS A 39 ALA A 43 -1 O LYS A 39 N ASP A 34 SHEET 3 B 4 LEU A 55 ASP A 59 -1 O VAL A 58 N LEU A 40 SHEET 4 B 4 ASN A 75 LYS A 76 -1 O ASN A 75 N GLU A 57 SHEET 1 C 4 ILE A 89 ILE A 94 0 SHEET 2 C 4 ARG A 99 ASP A 104 -1 O TRP A 101 N VAL A 93 SHEET 3 C 4 ALA A 124 ASP A 129 -1 O TYR A 128 N LEU A 100 SHEET 4 C 4 GLU A 137 TYR A 142 -1 O TYR A 141 N ILE A 125 SHEET 1 D 4 PHE A 154 VAL A 161 0 SHEET 2 D 4 THR A 171 ASN A 177 -1 O PHE A 172 N ASP A 160 SHEET 3 D 4 ALA A 182 ASP A 187 -1 O PHE A 184 N ILE A 175 SHEET 4 D 4 ASP A 192 THR A 197 -1 O ASP A 192 N ASP A 187 SHEET 1 E 2 THR A 207 TYR A 211 0 SHEET 2 E 2 LYS A 214 PHE A 218 -1 O PHE A 218 N THR A 207 SHEET 1 F 4 ILE A 222 LEU A 227 0 SHEET 2 F 4 PRO A 237 ALA A 242 -1 O TYR A 239 N THR A 226 SHEET 3 F 4 LYS A 247 ASN A 252 -1 O VAL A 251 N ALA A 238 SHEET 4 F 4 GLU A 266 ASN A 270 -1 O GLU A 266 N SER A 250 SHEET 1 G 4 ALA A 277 ASP A 283 0 SHEET 2 G 4 VAL A 288 GLU A 293 -1 O PHE A 290 N ALA A 281 SHEET 3 G 4 GLN A 298 ASN A 303 -1 O SER A 300 N PHE A 291 SHEET 4 G 4 THR A 314 THR A 319 -1 O VAL A 317 N VAL A 299 SHEET 1 H 4 THR B 3 TRP B 8 0 SHEET 2 H 4 TYR B 360 ILE B 365 -1 O ARG B 364 N GLN B 4 SHEET 3 H 4 LEU B 337 SER B 341 -1 N LEU B 337 O ILE B 365 SHEET 4 H 4 GLY B 326 VAL B 331 -1 N THR B 327 O MSE B 340 SHEET 1 I 4 ALA B 30 ASP B 34 0 SHEET 2 I 4 LYS B 39 ALA B 43 -1 O LYS B 39 N ASP B 34 SHEET 3 I 4 LEU B 55 ASP B 59 -1 O VAL B 58 N LEU B 40 SHEET 4 I 4 ASN B 75 LYS B 76 -1 O ASN B 75 N GLU B 57 SHEET 1 J 4 ILE B 89 ILE B 94 0 SHEET 2 J 4 ARG B 99 ASP B 104 -1 O TRP B 101 N VAL B 93 SHEET 3 J 4 ALA B 124 ASP B 129 -1 O TYR B 128 N LEU B 100 SHEET 4 J 4 GLU B 137 TYR B 142 -1 O VAL B 138 N ALA B 127 SHEET 1 K 4 PHE B 154 VAL B 161 0 SHEET 2 K 4 THR B 171 ASN B 177 -1 O PHE B 172 N ASP B 160 SHEET 3 K 4 ALA B 182 ASP B 187 -1 O PHE B 184 N ILE B 175 SHEET 4 K 4 ASP B 192 VAL B 196 -1 O ASP B 192 N ASP B 187 SHEET 1 L 2 THR B 207 TYR B 211 0 SHEET 2 L 2 LYS B 214 PHE B 218 -1 O PHE B 218 N THR B 207 SHEET 1 M 4 ILE B 222 LEU B 227 0 SHEET 2 M 4 PRO B 237 ALA B 242 -1 O TYR B 239 N THR B 226 SHEET 3 M 4 LYS B 247 ASN B 252 -1 O VAL B 251 N ALA B 238 SHEET 4 M 4 GLU B 266 ASN B 270 -1 O GLU B 266 N SER B 250 SHEET 1 N 4 ALA B 277 ASP B 283 0 SHEET 2 N 4 VAL B 288 GLU B 293 -1 O PHE B 290 N ALA B 281 SHEET 3 N 4 GLN B 298 ASN B 303 -1 O TRP B 302 N ILE B 289 SHEET 4 N 4 THR B 314 THR B 319 -1 O VAL B 317 N VAL B 299 SSBOND 1 CYS A 301 CYS A 377 1555 1555 2.07 SSBOND 2 CYS B 301 CYS B 377 1555 1555 2.10 LINK C ASN A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N ILE A 27 1555 1555 1.32 LINK C LYS A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N PRO A 308 1555 1555 1.35 LINK C ARG A 310 N MSE A 311 1555 1555 1.32 LINK C MSE A 311 N LYS A 312 1555 1555 1.34 LINK C PHE A 339 N MSE A 340 1555 1555 1.34 LINK C MSE A 340 N SER A 341 1555 1555 1.33 LINK C LEU A 362 N MSE A 363 1555 1555 1.33 LINK C MSE A 363 N ARG A 364 1555 1555 1.33 LINK C ILE A 365 N MSE A 366 1555 1555 1.34 LINK C MSE A 366 N ASP A 367 1555 1555 1.33 LINK C ASP A 378 N MSE A 379 1555 1555 1.33 LINK C MSE A 379 N ASN A 380 1555 1555 1.33 LINK C ASN B 25 N MSE B 26 1555 1555 1.34 LINK C MSE B 26 N ILE B 27 1555 1555 1.33 LINK C LYS B 306 N MSE B 307 1555 1555 1.33 LINK C MSE B 307 N PRO B 308 1555 1555 1.35 LINK C ARG B 310 N MSE B 311 1555 1555 1.33 LINK C MSE B 311 N LYS B 312 1555 1555 1.33 LINK C PHE B 339 N MSE B 340 1555 1555 1.33 LINK C MSE B 340 N SER B 341 1555 1555 1.33 LINK C LEU B 362 N MSE B 363 1555 1555 1.32 LINK C MSE B 363 N ARG B 364 1555 1555 1.33 LINK C ILE B 365 N MSE B 366 1555 1555 1.34 LINK C MSE B 366 N ASP B 367 1555 1555 1.33 LINK C ASP B 378 N MSE B 379 1555 1555 1.34 LINK C MSE B 379 N ASN B 380 1555 1555 1.33 CISPEP 1 PRO A 133 ASN A 134 0 -10.44 CISPEP 2 LEU A 268 GLY A 269 0 2.40 CISPEP 3 MSE A 307 PRO A 308 0 -2.44 CISPEP 4 ARG B 113 GLY B 114 0 -25.82 CISPEP 5 PRO B 133 ASN B 134 0 -15.99 CISPEP 6 PHE B 223 GLY B 224 0 -16.04 CISPEP 7 LEU B 268 GLY B 269 0 8.15 CISPEP 8 MSE B 307 PRO B 308 0 1.75 SITE 1 AC1 6 VAL A 148 GLU A 149 LYS A 150 ASN B 270 SITE 2 AC1 6 ARG B 310 LYS B 312 CRYST1 120.355 120.355 248.934 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008309 0.004797 0.000000 0.00000 SCALE2 0.000000 0.009594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004017 0.00000