HEADER HYDROLASE 03-JAN-11 3Q6V TITLE CRYSTAL STRUCTURE OF SERRATIA FONTICOLA SFH-I: GLYCEROL COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3-234; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA FONTICOLA; SOURCE 3 ORGANISM_TAXID: 47917; SOURCE 4 STRAIN: UTAD54; SOURCE 5 GENE: BLASFH-I, SFHI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-26B KEYWDS METALLOENZYME, ALPHA-BETA, METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FONSECA,M.J.SAAVEDRA,A.CORREIA,J.SPENCER REVDAT 3 20-MAR-24 3Q6V 1 REMARK LINK REVDAT 2 11-DEC-19 3Q6V 1 JRNL REMARK SEQADV REVDAT 1 13-JUL-11 3Q6V 0 JRNL AUTH F.FONSECA,E.H.BROMLEY,M.J.SAAVEDRA,A.CORREIA,J.SPENCER JRNL TITL CRYSTAL STRUCTURE OF SERRATIA FONTICOLA SFH-I: ACTIVATION OF JRNL TITL 2 THE NUCLEOPHILE IN MONO-ZINC METALLO-BETA-LACTAMASES. JRNL REF J.MOL.BIOL. V. 411 951 2011 JRNL REFN ESSN 1089-8638 JRNL PMID 21762699 JRNL DOI 10.1016/J.JMB.2011.06.043 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 84755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4008 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5498 ; 1.322 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 5.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;32.789 ;25.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;11.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3124 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2454 ; 1.049 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4033 ; 1.646 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1554 ; 2.349 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1457 ; 3.490 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4008 ; 1.287 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 428 ; 6.050 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3890 ; 5.602 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3Q6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84788 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 72.562 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 27% W/V PEG 3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.64000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 306 REMARK 465 MET B 37 REMARK 465 SER B 38 REMARK 465 GLU B 39 REMARK 465 LYS B 40 REMARK 465 LYS B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 254C CG CD OE1 OE2 REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 207 O HOH B 402 1.97 REMARK 500 O HOH A 349 O HOH A 400 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN B 162 O HOH B 367 1455 1.81 REMARK 500 ND2 ASN A 162 O HOH A 32 1655 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 48 112.96 -163.36 REMARK 500 TYR A 59 -155.87 -126.31 REMARK 500 THR A 86 171.81 73.40 REMARK 500 ASN A 184 55.92 34.19 REMARK 500 ALA A 195 -105.97 -157.33 REMARK 500 ASN A 220 -152.75 62.29 REMARK 500 ASP A 264 -146.85 64.32 REMARK 500 ASP A 264 -150.31 64.32 REMARK 500 PHE B 47 -63.07 -108.38 REMARK 500 TYR B 59 -157.47 -126.97 REMARK 500 THR B 86 172.04 77.91 REMARK 500 ASN B 184 62.25 28.31 REMARK 500 ALA B 195 -108.27 -154.83 REMARK 500 ASN B 220 -151.88 59.31 REMARK 500 ASP B 264 -149.44 61.07 REMARK 500 ASP B 264 -152.90 61.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL A 1 O3 REMARK 620 2 ASP A 120 OD2 120.8 REMARK 620 3 CYS A 221 SG 113.2 113.0 REMARK 620 4 HIS A 263 NE2 97.4 94.0 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL B 1 O1 REMARK 620 2 ASP B 120 OD2 127.1 REMARK 620 3 CYS B 221 SG 112.4 110.8 REMARK 620 4 HIS B 263 NE2 92.0 95.2 116.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q42 RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 NON-SEQUENTIAL RESIDUE NUMBERING IS USED IN THIS ENTRY. IT IS THE REMARK 999 STANDARD NUMBERING SCHEME FOR METALLO-BETA-LACTAMASES. DBREF 3Q6V A 38 306 UNP Q9RMI1 Q9RMI1_SERFO 3 234 DBREF 3Q6V B 38 306 UNP Q9RMI1 Q9RMI1_SERFO 3 234 SEQADV 3Q6V MET A 37 UNP Q9RMI1 INITIATING METHIONINE SEQADV 3Q6V MET B 37 UNP Q9RMI1 INITIATING METHIONINE SEQRES 1 A 233 MET SER GLU LYS ASN LEU THR LEU THR HIS PHE LYS GLY SEQRES 2 A 233 PRO LEU TYR ILE VAL GLU ASP LYS GLU TYR VAL GLN GLU SEQRES 3 A 233 ASN SER MET VAL TYR ILE GLY THR ASP GLY ILE THR ILE SEQRES 4 A 233 ILE GLY ALA THR TRP THR PRO GLU THR ALA GLU THR LEU SEQRES 5 A 233 TYR LYS GLU ILE ARG LYS VAL SER PRO LEU PRO ILE ASN SEQRES 6 A 233 GLU VAL ILE ASN THR ASN TYR HIS THR ASP ARG ALA GLY SEQRES 7 A 233 GLY ASN ALA TYR TRP LYS THR LEU GLY ALA LYS ILE VAL SEQRES 8 A 233 ALA THR GLN MET THR TYR ASP LEU GLN LYS SER GLN TRP SEQRES 9 A 233 GLY SER ILE VAL ASN PHE THR ARG GLN GLY ASN ASN LYS SEQRES 10 A 233 TYR PRO ASN LEU GLU LYS SER LEU PRO ASP THR VAL PHE SEQRES 11 A 233 PRO GLY ASP PHE ASN LEU GLN ASN GLY SER ILE ARG ALA SEQRES 12 A 233 MET TYR LEU GLY GLU ALA HIS THR LYS ASP GLY ILE PHE SEQRES 13 A 233 VAL TYR PHE PRO ALA GLU ARG VAL LEU TYR GLY ASN CYS SEQRES 14 A 233 ILE LEU LYS GLU ASN LEU GLY ASN MET SER PHE ALA ASN SEQRES 15 A 233 ARG THR GLU TYR PRO LYS THR LEU GLU LYS LEU LYS GLY SEQRES 16 A 233 LEU ILE GLU GLN GLY GLU LEU LYS VAL ASP SER ILE ILE SEQRES 17 A 233 ALA GLY HIS ASP THR PRO ILE HIS ASP VAL GLY LEU ILE SEQRES 18 A 233 ASP HIS TYR LEU THR LEU LEU GLU LYS ALA PRO LYS SEQRES 1 B 233 MET SER GLU LYS ASN LEU THR LEU THR HIS PHE LYS GLY SEQRES 2 B 233 PRO LEU TYR ILE VAL GLU ASP LYS GLU TYR VAL GLN GLU SEQRES 3 B 233 ASN SER MET VAL TYR ILE GLY THR ASP GLY ILE THR ILE SEQRES 4 B 233 ILE GLY ALA THR TRP THR PRO GLU THR ALA GLU THR LEU SEQRES 5 B 233 TYR LYS GLU ILE ARG LYS VAL SER PRO LEU PRO ILE ASN SEQRES 6 B 233 GLU VAL ILE ASN THR ASN TYR HIS THR ASP ARG ALA GLY SEQRES 7 B 233 GLY ASN ALA TYR TRP LYS THR LEU GLY ALA LYS ILE VAL SEQRES 8 B 233 ALA THR GLN MET THR TYR ASP LEU GLN LYS SER GLN TRP SEQRES 9 B 233 GLY SER ILE VAL ASN PHE THR ARG GLN GLY ASN ASN LYS SEQRES 10 B 233 TYR PRO ASN LEU GLU LYS SER LEU PRO ASP THR VAL PHE SEQRES 11 B 233 PRO GLY ASP PHE ASN LEU GLN ASN GLY SER ILE ARG ALA SEQRES 12 B 233 MET TYR LEU GLY GLU ALA HIS THR LYS ASP GLY ILE PHE SEQRES 13 B 233 VAL TYR PHE PRO ALA GLU ARG VAL LEU TYR GLY ASN CYS SEQRES 14 B 233 ILE LEU LYS GLU ASN LEU GLY ASN MET SER PHE ALA ASN SEQRES 15 B 233 ARG THR GLU TYR PRO LYS THR LEU GLU LYS LEU LYS GLY SEQRES 16 B 233 LEU ILE GLU GLN GLY GLU LEU LYS VAL ASP SER ILE ILE SEQRES 17 B 233 ALA GLY HIS ASP THR PRO ILE HIS ASP VAL GLY LEU ILE SEQRES 18 B 233 ASP HIS TYR LEU THR LEU LEU GLU LYS ALA PRO LYS HET GOL A 1 6 HET ZN A 2 1 HET GOL B 1 6 HET ZN B 2 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *426(H2 O) HELIX 1 1 THR A 88 SER A 104 1 16 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 LEU A 131 1 8 HELIX 4 4 GLN A 140 ASN A 161 1 22 HELIX 5 5 THR A 240 GLN A 254A 1 16 HELIX 6 6 VAL A 291 ALA A 304 1 14 HELIX 7 7 THR B 88 SER B 104 1 16 HELIX 8 8 HIS B 118 GLY B 123 1 6 HELIX 9 9 GLY B 124 LEU B 131 1 8 HELIX 10 10 GLN B 140 ASN B 161 1 22 HELIX 11 11 GLN B 183 SER B 186 5 4 HELIX 12 12 THR B 240 GLN B 254A 1 16 HELIX 13 13 GLY B 292 ALA B 304 1 13 SHEET 1 A 7 LEU A 42 LYS A 48 0 SHEET 2 A 7 LEU A 51 ASP A 56 -1 O ILE A 53 N THR A 45 SHEET 3 A 7 GLU A 69 ILE A 75 -1 O SER A 71 N VAL A 54 SHEET 4 A 7 ILE A 80 ILE A 83 -1 O ILE A 83 N MET A 72 SHEET 5 A 7 ILE A 109 ILE A 113 1 O ILE A 113 N ILE A 82 SHEET 6 A 7 LYS A 135 THR A 139 1 O VAL A 137 N VAL A 112 SHEET 7 A 7 THR A 174 PHE A 176 1 O PHE A 176 N ALA A 138 SHEET 1 B 6 PHE A 180 LEU A 182 0 SHEET 2 B 6 ILE A 187 MET A 190 -1 O ALA A 189 N PHE A 180 SHEET 3 B 6 PHE A 202 PHE A 205 -1 O TYR A 204 N ARG A 188 SHEET 4 B 6 VAL A 216 TYR A 218 -1 O TYR A 218 N VAL A 203 SHEET 5 B 6 SER A 258 ILE A 260 1 O ILE A 260 N LEU A 217 SHEET 6 B 6 ILE A 267 HIS A 289 -1 O HIS A 289 N ILE A 259 SHEET 1 C 7 LEU B 42 LYS B 48 0 SHEET 2 C 7 LEU B 51 ASP B 56 -1 O ILE B 53 N THR B 45 SHEET 3 C 7 GLU B 69 ILE B 75 -1 O SER B 71 N VAL B 54 SHEET 4 C 7 ILE B 80 ILE B 83 -1 O ILE B 83 N MET B 72 SHEET 5 C 7 ILE B 109 ILE B 113 1 O ILE B 113 N ILE B 82 SHEET 6 C 7 LYS B 135 THR B 139 1 O VAL B 137 N VAL B 112 SHEET 7 C 7 THR B 174 PHE B 176 1 O PHE B 176 N ALA B 138 SHEET 1 D 6 PHE B 180 LEU B 182 0 SHEET 2 D 6 ILE B 187 MET B 190 -1 O ALA B 189 N PHE B 180 SHEET 3 D 6 PHE B 202 PHE B 205 -1 O TYR B 204 N ARG B 188 SHEET 4 D 6 VAL B 216 TYR B 218 -1 O TYR B 218 N VAL B 203 SHEET 5 D 6 SER B 258 ILE B 260 1 O ILE B 260 N LEU B 217 SHEET 6 D 6 ILE B 267 HIS B 289 -1 O HIS B 289 N ILE B 259 LINK O3 GOL A 1 ZN ZN A 2 1555 1555 1.92 LINK ZN ZN A 2 OD2 ASP A 120 1555 1555 1.89 LINK ZN ZN A 2 SG CYS A 221 1555 1555 2.28 LINK ZN ZN A 2 NE2 HIS A 263 1555 1555 2.06 LINK O1 GOL B 1 ZN ZN B 2 1555 1555 1.90 LINK ZN ZN B 2 OD2 ASP B 120 1555 1555 1.94 LINK ZN ZN B 2 SG CYS B 221 1555 1555 2.27 LINK ZN ZN B 2 NE2 HIS B 263 1555 1555 2.04 SITE 1 AC1 9 HIS A 118 ASP A 120 HIS A 196 CYS A 221 SITE 2 AC1 9 ASN A 233 HIS A 263 HOH A 281 HOH A 283 SITE 3 AC1 9 ZN A 2 SITE 1 AC2 4 GOL A 1 ASP A 120 CYS A 221 HIS A 263 SITE 1 AC3 9 ZN B 2 HIS B 118 ASP B 120 HIS B 196 SITE 2 AC3 9 CYS B 221 ASN B 233 HIS B 263 HOH B 353 SITE 3 AC3 9 HOH B 504 SITE 1 AC4 4 GOL B 1 ASP B 120 CYS B 221 HIS B 263 CRYST1 32.830 87.280 72.570 90.00 90.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030460 0.000000 0.000452 0.00000 SCALE2 0.000000 0.011457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013781 0.00000