data_3Q86 # _entry.id 3Q86 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3Q86 RCSB RCSB063315 WWPDB D_1000063315 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3Q83 . unspecified PDB 3Q89 . unspecified PDB 3Q8U . unspecified PDB 3Q8V . unspecified PDB 3Q8Y . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3Q86 _pdbx_database_status.recvd_initial_deposition_date 2011-01-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Srivastava, S.K.' 1 'Rajasree, K.' 2 'Gopal, B.' 3 # _citation.id primary _citation.title ;Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. ; _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1814 _citation.page_first 1349 _citation.page_last 1357 _citation.year 2011 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21745603 _citation.pdbx_database_id_DOI 10.1016/j.bbapap.2011.06.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Srivastava, S.K.' 1 primary 'Rajasree, K.' 2 primary 'Gopal, B.' 3 # _cell.entry_id 3Q86 _cell.length_a 75.302 _cell.length_b 75.302 _cell.length_c 154.712 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3Q86 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 17663.873 2 2.7.4.6 ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYELEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ARG n 1 4 THR n 1 5 PHE n 1 6 LEU n 1 7 MET n 1 8 ILE n 1 9 LYS n 1 10 PRO n 1 11 ASP n 1 12 ALA n 1 13 VAL n 1 14 GLN n 1 15 ARG n 1 16 ASN n 1 17 LEU n 1 18 ILE n 1 19 GLY n 1 20 GLU n 1 21 VAL n 1 22 ILE n 1 23 SER n 1 24 ARG n 1 25 ILE n 1 26 GLU n 1 27 ARG n 1 28 LYS n 1 29 GLY n 1 30 LEU n 1 31 LYS n 1 32 LEU n 1 33 VAL n 1 34 GLY n 1 35 GLY n 1 36 LYS n 1 37 LEU n 1 38 MET n 1 39 GLN n 1 40 VAL n 1 41 PRO n 1 42 MET n 1 43 GLU n 1 44 LEU n 1 45 ALA n 1 46 GLU n 1 47 THR n 1 48 HIS n 1 49 TYR n 1 50 GLY n 1 51 GLU n 1 52 HIS n 1 53 GLN n 1 54 GLY n 1 55 LYS n 1 56 PRO n 1 57 PHE n 1 58 TYR n 1 59 ASN n 1 60 ASP n 1 61 LEU n 1 62 ILE n 1 63 SER n 1 64 PHE n 1 65 ILE n 1 66 THR n 1 67 SER n 1 68 ALA n 1 69 PRO n 1 70 VAL n 1 71 PHE n 1 72 ALA n 1 73 MET n 1 74 VAL n 1 75 VAL n 1 76 GLU n 1 77 GLY n 1 78 GLU n 1 79 ASP n 1 80 ALA n 1 81 VAL n 1 82 ASN n 1 83 VAL n 1 84 SER n 1 85 ARG n 1 86 HIS n 1 87 ILE n 1 88 ILE n 1 89 GLY n 1 90 SER n 1 91 THR n 1 92 ASN n 1 93 PRO n 1 94 SER n 1 95 GLU n 1 96 ALA n 1 97 SER n 1 98 PRO n 1 99 GLY n 1 100 SER n 1 101 ILE n 1 102 ARG n 1 103 GLY n 1 104 ASP n 1 105 LEU n 1 106 GLY n 1 107 LEU n 1 108 THR n 1 109 VAL n 1 110 GLY n 1 111 ARG n 1 112 ASN n 1 113 ILE n 1 114 ILE n 1 115 HIS n 1 116 GLY n 1 117 SER n 1 118 ASP n 1 119 SER n 1 120 LEU n 1 121 GLU n 1 122 SER n 1 123 ALA n 1 124 GLU n 1 125 ARG n 1 126 GLU n 1 127 ILE n 1 128 ASN n 1 129 LEU n 1 130 TRP n 1 131 PHE n 1 132 ASN n 1 133 GLU n 1 134 ASN n 1 135 GLU n 1 136 ILE n 1 137 THR n 1 138 SER n 1 139 TYR n 1 140 ALA n 1 141 SER n 1 142 PRO n 1 143 ARG n 1 144 ASP n 1 145 ALA n 1 146 TRP n 1 147 LEU n 1 148 TYR n 1 149 GLU n 1 150 LEU n 1 151 GLU n 1 152 HIS n 1 153 HIS n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ndk, SACOL1509' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain COL _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'genomic DNA' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 93062 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_STAAC _struct_ref.pdbx_db_accession Q5HFV4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3Q86 A 1 ? 149 ? Q5HFV4 1 ? 149 ? 1 149 2 1 3Q86 B 1 ? 149 ? Q5HFV4 1 ? 149 ? 1 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3Q86 LEU A 150 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 150 1 1 3Q86 GLU A 151 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 151 2 1 3Q86 HIS A 152 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 152 3 1 3Q86 HIS A 153 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 153 4 1 3Q86 HIS A 154 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 154 5 1 3Q86 HIS A 155 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 155 6 1 3Q86 HIS A 156 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 156 7 1 3Q86 HIS A 157 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 157 8 2 3Q86 LEU B 150 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 150 9 2 3Q86 GLU B 151 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 151 10 2 3Q86 HIS B 152 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 152 11 2 3Q86 HIS B 153 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 153 12 2 3Q86 HIS B 154 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 154 13 2 3Q86 HIS B 155 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 155 14 2 3Q86 HIS B 156 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 156 15 2 3Q86 HIS B 157 ? UNP Q5HFV4 ? ? 'EXPRESSION TAG' 157 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3Q86 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.52 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Microbatch Crystallization' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details '0.1M Mgacetate, 0.1M citric acid, pH 5, 14% PEG 8000 , Microbatch Crystallization, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2010-05-05 _diffrn_detector.details 'Goebel Mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CuK (Alpha)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3Q86 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 37.65 _reflns.d_resolution_high 2.36 _reflns.number_obs 13104 _reflns.number_all ? _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.030 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 46.4 _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.36 _reflns_shell.d_res_low 2.48 _reflns_shell.percent_possible_all 78.5 _reflns_shell.Rmerge_I_obs 0.081 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 20.4 _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1550 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3Q86 _refine.ls_number_reflns_obs 12456 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.65 _refine.ls_d_res_high 2.38 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.16877 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16626 _refine.ls_R_factor_R_free 0.22011 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 644 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 19.665 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3Q83 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.239 _refine.overall_SU_ML 0.158 _refine.overall_SU_B 6.553 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3Q86 _refine_analyze.Luzzati_coordinate_error_obs 0.239 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2290 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 2491 _refine_hist.d_res_high 2.38 _refine_hist.d_res_low 37.65 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 2428 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.926 1.992 ? 3302 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.983 5.000 ? 296 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.888 23.889 ? 108 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.842 15.000 ? 404 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 25.788 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 362 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1816 'X-RAY DIFFRACTION' ? r_mcbond_it 0.794 1.500 ? 1476 'X-RAY DIFFRACTION' ? r_mcangle_it 1.555 2.000 ? 2378 'X-RAY DIFFRACTION' ? r_scbond_it 2.782 3.000 ? 952 'X-RAY DIFFRACTION' ? r_scangle_it 4.678 4.500 ? 924 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 580 0.07 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 A 549 0.09 0.50 'medium positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 B 580 0.21 0.50 'tight thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? 1 B 549 0.22 2.00 'medium thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.377 _refine_ls_shell.d_res_low 2.439 _refine_ls_shell.number_reflns_R_work 822 _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.percent_reflns_obs 93.80 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 1 A 149 1 2 ? ? ? ? ? ? ? ? 1 ? 2 B 1 B 149 1 2 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3Q86 _struct.title 'Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP' _struct.pdbx_descriptor 'Nucleoside diphosphate kinase (E.C.2.7.4.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q86 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Ferridoxin fold, alpha-beta protein family, Nucleoside diphosphate kinases (NDKs), transfer, a gamma phosphate, nucleoside triphosphates, nucleoside diphosphate, Nucleotide binding Magnesium, Metal binding, Phosphorylation, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 9 ? ARG A 15 ? LYS A 9 ARG A 15 1 ? 7 HELX_P HELX_P2 2 LEU A 17 ? LYS A 28 ? LEU A 17 LYS A 28 1 ? 12 HELX_P HELX_P3 3 PRO A 41 ? TYR A 49 ? PRO A 41 TYR A 49 1 ? 9 HELX_P HELX_P4 4 GLY A 50 ? GLN A 53 ? GLY A 50 GLN A 53 5 ? 4 HELX_P HELX_P5 5 PHE A 57 ? THR A 66 ? PHE A 57 THR A 66 1 ? 10 HELX_P HELX_P6 6 ASP A 79 ? GLY A 89 ? ASP A 79 GLY A 89 1 ? 11 HELX_P HELX_P7 7 SER A 100 ? GLY A 106 ? SER A 100 GLY A 106 1 ? 7 HELX_P HELX_P8 8 SER A 119 ? GLU A 121 ? SER A 119 GLU A 121 1 ? 3 HELX_P HELX_P9 9 SER A 122 ? GLU A 124 ? SER A 122 GLU A 124 1 ? 3 HELX_P HELX_P10 10 ARG A 125 ? PHE A 131 ? ARG A 125 PHE A 131 1 ? 7 HELX_P HELX_P11 11 ASN A 132 ? ILE A 136 ? ASN A 132 ILE A 136 5 ? 5 HELX_P HELX_P12 12 ARG A 143 ? TYR A 148 ? ARG A 143 TYR A 148 1 ? 6 HELX_P HELX_P13 13 LYS B 9 ? ARG B 15 ? LYS B 9 ARG B 15 1 ? 7 HELX_P HELX_P14 14 LEU B 17 ? ARG B 27 ? LEU B 17 ARG B 27 1 ? 11 HELX_P HELX_P15 15 PRO B 41 ? TYR B 49 ? PRO B 41 TYR B 49 1 ? 9 HELX_P HELX_P16 16 GLY B 50 ? GLN B 53 ? GLY B 50 GLN B 53 5 ? 4 HELX_P HELX_P17 17 PHE B 57 ? THR B 66 ? PHE B 57 THR B 66 1 ? 10 HELX_P HELX_P18 18 ASP B 79 ? GLY B 89 ? ASP B 79 GLY B 89 1 ? 11 HELX_P HELX_P19 19 SER B 100 ? GLY B 106 ? SER B 100 GLY B 106 1 ? 7 HELX_P HELX_P20 20 SER B 119 ? PHE B 131 ? SER B 119 PHE B 131 1 ? 13 HELX_P HELX_P21 21 ASN B 132 ? ILE B 136 ? ASN B 132 ILE B 136 5 ? 5 HELX_P HELX_P22 22 ARG B 143 ? TYR B 148 ? ARG B 143 TYR B 148 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? E GTP . O2A ? ? ? 1_555 F MG . MG ? ? B GTP 158 B MG 159 1_555 ? ? ? ? ? ? ? 1.842 ? metalc2 metalc ? ? C GTP . O2B ? ? ? 1_555 D MG . MG ? ? A GTP 158 A MG 159 1_555 ? ? ? ? ? ? ? 1.860 ? metalc3 metalc ? ? E GTP . O2G ? ? ? 1_555 F MG . MG ? ? B GTP 158 B MG 159 1_555 ? ? ? ? ? ? ? 2.065 ? metalc4 metalc ? ? C GTP . O1A ? ? ? 1_555 D MG . MG ? ? A GTP 158 A MG 159 1_555 ? ? ? ? ? ? ? 2.233 ? metalc5 metalc ? ? E GTP . O1B ? ? ? 1_555 F MG . MG ? ? B GTP 158 B MG 159 1_555 ? ? ? ? ? ? ? 2.688 ? metalc6 metalc ? ? C GTP . "O5'" ? ? ? 1_555 D MG . MG ? ? A GTP 158 A MG 159 1_555 ? ? ? ? ? ? ? 2.928 ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 159 B HOH 195 1_555 ? ? ? ? ? ? ? 2.218 ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 159 B HOH 196 1_555 ? ? ? ? ? ? ? 2.288 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 31 ? MET A 38 ? LYS A 31 MET A 38 A 2 VAL A 70 ? GLU A 76 ? VAL A 70 GLU A 76 A 3 ARG A 3 ? ILE A 8 ? ARG A 3 ILE A 8 A 4 ILE A 114 ? GLY A 116 ? ILE A 114 GLY A 116 B 1 LYS B 31 ? MET B 38 ? LYS B 31 MET B 38 B 2 VAL B 70 ? GLU B 76 ? VAL B 70 GLU B 76 B 3 ARG B 3 ? ILE B 8 ? ARG B 3 ILE B 8 B 4 ILE B 114 ? GLY B 116 ? ILE B 114 GLY B 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 31 ? N LYS A 31 O GLU A 76 ? O GLU A 76 A 2 3 O PHE A 71 ? O PHE A 71 N ILE A 8 ? N ILE A 8 A 3 4 N MET A 7 ? N MET A 7 O HIS A 115 ? O HIS A 115 B 1 2 N LYS B 31 ? N LYS B 31 O GLU B 76 ? O GLU B 76 B 2 3 O PHE B 71 ? O PHE B 71 N ILE B 8 ? N ILE B 8 B 3 4 N MET B 7 ? N MET B 7 O HIS B 115 ? O HIS B 115 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE GTP A 158' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG A 159' AC3 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE GTP B 158' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG B 159' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 LYS A 9 ? LYS A 9 . ? 1_555 ? 2 AC1 15 TYR A 49 ? TYR A 49 . ? 1_555 ? 3 AC1 15 HIS A 52 ? HIS A 52 . ? 1_555 ? 4 AC1 15 PHE A 57 ? PHE A 57 . ? 1_555 ? 5 AC1 15 THR A 91 ? THR A 91 . ? 1_555 ? 6 AC1 15 VAL A 109 ? VAL A 109 . ? 1_555 ? 7 AC1 15 GLY A 110 ? GLY A 110 . ? 1_555 ? 8 AC1 15 ASN A 112 ? ASN A 112 . ? 1_555 ? 9 AC1 15 HIS A 115 ? HIS A 115 . ? 1_555 ? 10 AC1 15 GLU A 149 ? GLU A 149 . ? 2_545 ? 11 AC1 15 MG D . ? MG A 159 . ? 1_555 ? 12 AC1 15 HOH G . ? HOH A 206 . ? 1_555 ? 13 AC1 15 HOH G . ? HOH A 218 . ? 1_555 ? 14 AC1 15 HOH G . ? HOH A 227 . ? 1_555 ? 15 AC1 15 HOH H . ? HOH B 210 . ? 9_544 ? 16 AC2 3 THR A 91 ? THR A 91 . ? 1_555 ? 17 AC2 3 ARG A 102 ? ARG A 102 . ? 1_555 ? 18 AC2 3 GTP C . ? GTP A 158 . ? 1_555 ? 19 AC3 20 LYS B 9 ? LYS B 9 . ? 1_555 ? 20 AC3 20 TYR B 49 ? TYR B 49 . ? 1_555 ? 21 AC3 20 HIS B 52 ? HIS B 52 . ? 1_555 ? 22 AC3 20 PHE B 57 ? PHE B 57 . ? 1_555 ? 23 AC3 20 THR B 91 ? THR B 91 . ? 1_555 ? 24 AC3 20 ARG B 102 ? ARG B 102 . ? 1_555 ? 25 AC3 20 VAL B 109 ? VAL B 109 . ? 1_555 ? 26 AC3 20 GLY B 110 ? GLY B 110 . ? 1_555 ? 27 AC3 20 ASN B 112 ? ASN B 112 . ? 1_555 ? 28 AC3 20 HIS B 115 ? HIS B 115 . ? 1_555 ? 29 AC3 20 GLY B 116 ? GLY B 116 . ? 1_555 ? 30 AC3 20 MG F . ? MG B 159 . ? 1_555 ? 31 AC3 20 HOH H . ? HOH B 179 . ? 1_555 ? 32 AC3 20 HOH H . ? HOH B 195 . ? 1_555 ? 33 AC3 20 HOH H . ? HOH B 196 . ? 1_555 ? 34 AC3 20 HOH H . ? HOH B 208 . ? 1_555 ? 35 AC3 20 HOH H . ? HOH B 209 . ? 1_555 ? 36 AC3 20 HOH H . ? HOH B 210 . ? 1_555 ? 37 AC3 20 HOH H . ? HOH B 211 . ? 1_555 ? 38 AC3 20 HOH H . ? HOH B 212 . ? 1_555 ? 39 AC4 3 GTP E . ? GTP B 158 . ? 1_555 ? 40 AC4 3 HOH H . ? HOH B 195 . ? 1_555 ? 41 AC4 3 HOH H . ? HOH B 196 . ? 1_555 ? # _database_PDB_matrix.entry_id 3Q86 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3Q86 _atom_sites.fract_transf_matrix[1][1] 0.013280 _atom_sites.fract_transf_matrix[1][2] 0.007667 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015334 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006464 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 TRP 130 130 130 TRP TRP A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 TRP 146 146 146 TRP TRP A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 LEU 150 150 ? ? ? A . n A 1 151 GLU 151 151 ? ? ? A . n A 1 152 HIS 152 152 ? ? ? A . n A 1 153 HIS 153 153 ? ? ? A . n A 1 154 HIS 154 154 ? ? ? A . n A 1 155 HIS 155 155 ? ? ? A . n A 1 156 HIS 156 156 ? ? ? A . n A 1 157 HIS 157 157 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 ARG 3 3 3 ARG ARG B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 MET 7 7 7 MET MET B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 GLN 14 14 14 GLN GLN B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 ASN 16 16 16 ASN ASN B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 ILE 22 22 22 ILE ILE B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 ILE 25 25 25 ILE ILE B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 MET 38 38 38 MET MET B . n B 1 39 GLN 39 39 39 GLN GLN B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 MET 42 42 42 MET MET B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 THR 47 47 47 THR THR B . n B 1 48 HIS 48 48 48 HIS HIS B . n B 1 49 TYR 49 49 49 TYR TYR B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 HIS 52 52 52 HIS HIS B . n B 1 53 GLN 53 53 53 GLN GLN B . n B 1 54 GLY 54 54 54 GLY GLY B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 PHE 57 57 57 PHE PHE B . n B 1 58 TYR 58 58 58 TYR TYR B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 ILE 65 65 65 ILE ILE B . n B 1 66 THR 66 66 66 THR THR B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 PRO 69 69 69 PRO PRO B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 ALA 72 72 72 ALA ALA B . n B 1 73 MET 73 73 73 MET MET B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 ASP 79 79 79 ASP ASP B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 ASN 82 82 82 ASN ASN B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 ASN 92 92 92 ASN ASN B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 GLU 95 95 95 GLU GLU B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 SER 97 97 97 SER SER B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 GLY 99 99 99 GLY GLY B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 ILE 101 101 101 ILE ILE B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 ASP 104 104 104 ASP ASP B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 THR 108 108 108 THR THR B . n B 1 109 VAL 109 109 109 VAL VAL B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 ARG 111 111 111 ARG ARG B . n B 1 112 ASN 112 112 112 ASN ASN B . n B 1 113 ILE 113 113 113 ILE ILE B . n B 1 114 ILE 114 114 114 ILE ILE B . n B 1 115 HIS 115 115 115 HIS HIS B . n B 1 116 GLY 116 116 116 GLY GLY B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 SER 119 119 119 SER SER B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 GLU 121 121 121 GLU GLU B . n B 1 122 SER 122 122 122 SER SER B . n B 1 123 ALA 123 123 123 ALA ALA B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 ARG 125 125 125 ARG ARG B . n B 1 126 GLU 126 126 126 GLU GLU B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 ASN 128 128 128 ASN ASN B . n B 1 129 LEU 129 129 129 LEU LEU B . n B 1 130 TRP 130 130 130 TRP TRP B . n B 1 131 PHE 131 131 131 PHE PHE B . n B 1 132 ASN 132 132 132 ASN ASN B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 ASN 134 134 134 ASN ASN B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 THR 137 137 137 THR THR B . n B 1 138 SER 138 138 138 SER SER B . n B 1 139 TYR 139 139 139 TYR TYR B . n B 1 140 ALA 140 140 140 ALA ALA B . n B 1 141 SER 141 141 141 SER SER B . n B 1 142 PRO 142 142 142 PRO PRO B . n B 1 143 ARG 143 143 143 ARG ARG B . n B 1 144 ASP 144 144 144 ASP ASP B . n B 1 145 ALA 145 145 145 ALA ALA B . n B 1 146 TRP 146 146 146 TRP TRP B . n B 1 147 LEU 147 147 147 LEU LEU B . n B 1 148 TYR 148 148 148 TYR TYR B . n B 1 149 GLU 149 149 149 GLU GLU B . n B 1 150 LEU 150 150 ? ? ? B . n B 1 151 GLU 151 151 ? ? ? B . n B 1 152 HIS 152 152 ? ? ? B . n B 1 153 HIS 153 153 ? ? ? B . n B 1 154 HIS 154 154 ? ? ? B . n B 1 155 HIS 155 155 ? ? ? B . n B 1 156 HIS 156 156 ? ? ? B . n B 1 157 HIS 157 157 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,G 2 1,2,3 B,E,F,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5420 ? 1 MORE -20 ? 1 'SSA (A^2)' 18450 ? 2 'ABSA (A^2)' 5450 ? 2 MORE -19 ? 2 'SSA (A^2)' 18380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 37.6510000000 0.8660254038 -0.5000000000 0.0000000000 -65.2134449558 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 75.3020000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2A ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O2G ? E GTP . ? B GTP 158 ? 1_555 93.2 ? 2 O2A ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O1B ? E GTP . ? B GTP 158 ? 1_555 75.7 ? 3 O2G ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O1B ? E GTP . ? B GTP 158 ? 1_555 73.6 ? 4 O2A ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 195 ? 1_555 147.6 ? 5 O2G ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 195 ? 1_555 92.3 ? 6 O1B ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 195 ? 1_555 75.4 ? 7 O2A ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 196 ? 1_555 83.3 ? 8 O2G ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 196 ? 1_555 164.1 ? 9 O1B ? E GTP . ? B GTP 158 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 196 ? 1_555 90.5 ? 10 O ? H HOH . ? B HOH 195 ? 1_555 MG ? F MG . ? B MG 159 ? 1_555 O ? H HOH . ? B HOH 196 ? 1_555 82.7 ? 11 O2B ? C GTP . ? A GTP 158 ? 1_555 MG ? D MG . ? A MG 159 ? 1_555 O1A ? C GTP . ? A GTP 158 ? 1_555 92.6 ? 12 O2B ? C GTP . ? A GTP 158 ? 1_555 MG ? D MG . ? A MG 159 ? 1_555 "O5'" ? C GTP . ? A GTP 158 ? 1_555 56.4 ? 13 O1A ? C GTP . ? A GTP 158 ? 1_555 MG ? D MG . ? A MG 159 ? 1_555 "O5'" ? C GTP . ? A GTP 158 ? 1_555 59.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-27 2 'Structure model' 1 1 2013-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A GLY 54 ? ? O A HOH 202 ? ? 1.52 2 1 CA A GLY 54 ? ? O A HOH 212 ? ? 1.63 3 1 "C4'" B GTP 158 ? ? O B HOH 212 ? ? 1.76 4 1 "C5'" A GTP 158 ? ? O A HOH 227 ? ? 1.76 5 1 C A GLY 54 ? ? O A HOH 212 ? ? 1.82 6 1 O A GLN 53 ? ? O A HOH 212 ? ? 1.89 7 1 "O5'" B GTP 158 ? ? O B HOH 212 ? ? 2.03 8 1 CB A ASN 82 ? ? O A HOH 201 ? ? 2.04 9 1 CB B ASN 82 ? ? O B HOH 205 ? ? 2.08 10 1 OE1 B GLU 95 ? ? O B HOH 192 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 223 ? ? 1_555 O B HOH 219 ? ? 9_544 1.94 2 1 OE2 A GLU 149 ? ? 1_555 N2 A GTP 158 ? ? 3_655 1.95 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 43 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 43 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.625 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation 0.110 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH2 A ARG 15 ? ? 124.05 120.30 3.75 0.50 N 2 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH1 A ARG 102 ? ? 116.17 120.30 -4.13 0.50 N 3 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH2 A ARG 102 ? ? 125.04 120.30 4.74 0.50 N 4 1 NE B ARG 15 ? ? CZ B ARG 15 ? ? NH1 B ARG 15 ? ? 115.16 120.30 -5.14 0.50 N 5 1 NE B ARG 15 ? ? CZ B ARG 15 ? ? NH2 B ARG 15 ? ? 123.83 120.30 3.53 0.50 N 6 1 NE B ARG 102 ? ? CZ B ARG 102 ? ? NH1 B ARG 102 ? ? 115.76 120.30 -4.54 0.50 N 7 1 NE B ARG 102 ? ? CZ B ARG 102 ? ? NH2 B ARG 102 ? ? 125.61 120.30 5.31 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 113 ? ? 74.90 -48.60 2 1 ILE B 113 ? ? 77.14 -44.29 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 43 ? O ? A GLU 43 O 2 1 Y 1 A GLU 43 ? CG ? A GLU 43 CG 3 1 Y 1 A GLU 43 ? CD ? A GLU 43 CD 4 1 Y 1 A GLU 43 ? OE1 ? A GLU 43 OE1 5 1 Y 1 A GLU 43 ? OE2 ? A GLU 43 OE2 6 1 Y 1 A GLU 121 ? C ? A GLU 121 C 7 1 Y 1 A GLU 121 ? O ? A GLU 121 O 8 1 Y 1 A GLU 121 ? CG ? A GLU 121 CG 9 1 Y 1 A GLU 121 ? CD ? A GLU 121 CD 10 1 Y 1 A GLU 121 ? OE1 ? A GLU 121 OE1 11 1 Y 1 A GLU 121 ? OE2 ? A GLU 121 OE2 12 1 Y 1 A GLU 124 ? C ? A GLU 124 C 13 1 Y 1 A GLU 124 ? O ? A GLU 124 O 14 1 Y 1 A GLU 124 ? CG ? A GLU 124 CG 15 1 Y 1 A GLU 124 ? CD ? A GLU 124 CD 16 1 Y 1 A GLU 124 ? OE1 ? A GLU 124 OE1 17 1 Y 1 A GLU 124 ? OE2 ? A GLU 124 OE2 18 1 Y 1 A GLU 133 ? CG ? A GLU 133 CG 19 1 Y 1 A GLU 133 ? CD ? A GLU 133 CD 20 1 Y 1 A GLU 133 ? OE1 ? A GLU 133 OE1 21 1 Y 1 A GLU 133 ? OE2 ? A GLU 133 OE2 22 1 Y 1 B GLN 53 ? CB ? B GLN 53 CB 23 1 Y 1 B GLN 53 ? CG ? B GLN 53 CG 24 1 Y 1 B GLN 53 ? CD ? B GLN 53 CD 25 1 Y 1 B GLN 53 ? OE1 ? B GLN 53 OE1 26 1 Y 1 B GLN 53 ? NE2 ? B GLN 53 NE2 27 1 Y 1 B GLU 121 ? O ? B GLU 121 O 28 1 Y 1 B GLU 121 ? CG ? B GLU 121 CG 29 1 Y 1 B GLU 121 ? CD ? B GLU 121 CD 30 1 Y 1 B GLU 121 ? OE1 ? B GLU 121 OE1 31 1 Y 1 B GLU 121 ? OE2 ? B GLU 121 OE2 32 1 Y 1 B GLU 124 ? O ? B GLU 124 O 33 1 Y 1 B GLU 124 ? CG ? B GLU 124 CG 34 1 Y 1 B GLU 124 ? CD ? B GLU 124 CD 35 1 Y 1 B GLU 124 ? OE1 ? B GLU 124 OE1 36 1 Y 1 B GLU 124 ? OE2 ? B GLU 124 OE2 37 1 Y 1 B GLU 133 ? CG ? B GLU 133 CG 38 1 Y 1 B GLU 133 ? CD ? B GLU 133 CD 39 1 Y 1 B GLU 133 ? OE1 ? B GLU 133 OE1 40 1 Y 1 B GLU 133 ? OE2 ? B GLU 133 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 150 ? A LEU 150 2 1 Y 1 A GLU 151 ? A GLU 151 3 1 Y 1 A HIS 152 ? A HIS 152 4 1 Y 1 A HIS 153 ? A HIS 153 5 1 Y 1 A HIS 154 ? A HIS 154 6 1 Y 1 A HIS 155 ? A HIS 155 7 1 Y 1 A HIS 156 ? A HIS 156 8 1 Y 1 A HIS 157 ? A HIS 157 9 1 Y 1 B LEU 150 ? B LEU 150 10 1 Y 1 B GLU 151 ? B GLU 151 11 1 Y 1 B HIS 152 ? B HIS 152 12 1 Y 1 B HIS 153 ? B HIS 153 13 1 Y 1 B HIS 154 ? B HIS 154 14 1 Y 1 B HIS 155 ? B HIS 155 15 1 Y 1 B HIS 156 ? B HIS 156 16 1 Y 1 B HIS 157 ? B HIS 157 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP 1 158 2 GTP GTP A . D 3 MG 1 159 2 MG MG A . E 2 GTP 1 158 1 GTP GTP B . F 3 MG 1 159 1 MG MG B . G 4 HOH 1 160 3 HOH HOH A . G 4 HOH 2 161 5 HOH HOH A . G 4 HOH 3 162 8 HOH HOH A . G 4 HOH 4 163 9 HOH HOH A . G 4 HOH 5 164 11 HOH HOH A . G 4 HOH 6 165 13 HOH HOH A . G 4 HOH 7 166 16 HOH HOH A . G 4 HOH 8 167 17 HOH HOH A . G 4 HOH 9 168 19 HOH HOH A . G 4 HOH 10 169 20 HOH HOH A . G 4 HOH 11 170 23 HOH HOH A . G 4 HOH 12 171 26 HOH HOH A . G 4 HOH 13 172 28 HOH HOH A . G 4 HOH 14 173 29 HOH HOH A . G 4 HOH 15 174 30 HOH HOH A . G 4 HOH 16 175 31 HOH HOH A . G 4 HOH 17 176 32 HOH HOH A . G 4 HOH 18 177 35 HOH HOH A . G 4 HOH 19 178 36 HOH HOH A . G 4 HOH 20 179 37 HOH HOH A . G 4 HOH 21 180 38 HOH HOH A . G 4 HOH 22 181 39 HOH HOH A . G 4 HOH 23 182 42 HOH HOH A . G 4 HOH 24 183 45 HOH HOH A . G 4 HOH 25 184 54 HOH HOH A . G 4 HOH 26 185 59 HOH HOH A . G 4 HOH 27 186 60 HOH HOH A . G 4 HOH 28 187 63 HOH HOH A . G 4 HOH 29 188 64 HOH HOH A . G 4 HOH 30 189 65 HOH HOH A . G 4 HOH 31 190 67 HOH HOH A . G 4 HOH 32 191 68 HOH HOH A . G 4 HOH 33 192 77 HOH HOH A . G 4 HOH 34 193 79 HOH HOH A . G 4 HOH 35 194 80 HOH HOH A . G 4 HOH 36 195 81 HOH HOH A . G 4 HOH 37 196 82 HOH HOH A . G 4 HOH 38 197 83 HOH HOH A . G 4 HOH 39 198 84 HOH HOH A . G 4 HOH 40 199 87 HOH HOH A . G 4 HOH 41 200 88 HOH HOH A . G 4 HOH 42 201 90 HOH HOH A . G 4 HOH 43 202 93 HOH HOH A . G 4 HOH 44 203 94 HOH HOH A . G 4 HOH 45 204 95 HOH HOH A . G 4 HOH 46 205 97 HOH HOH A . G 4 HOH 47 206 103 HOH HOH A . G 4 HOH 48 207 104 HOH HOH A . G 4 HOH 49 208 105 HOH HOH A . G 4 HOH 50 209 106 HOH HOH A . G 4 HOH 51 210 107 HOH HOH A . G 4 HOH 52 211 109 HOH HOH A . G 4 HOH 53 212 113 HOH HOH A . G 4 HOH 54 213 114 HOH HOH A . G 4 HOH 55 214 115 HOH HOH A . G 4 HOH 56 215 116 HOH HOH A . G 4 HOH 57 216 117 HOH HOH A . G 4 HOH 58 217 118 HOH HOH A . G 4 HOH 59 218 119 HOH HOH A . G 4 HOH 60 219 120 HOH HOH A . G 4 HOH 61 220 127 HOH HOH A . G 4 HOH 62 221 128 HOH HOH A . G 4 HOH 63 222 129 HOH HOH A . G 4 HOH 64 223 130 HOH HOH A . G 4 HOH 65 224 131 HOH HOH A . G 4 HOH 66 225 132 HOH HOH A . G 4 HOH 67 226 135 HOH HOH A . G 4 HOH 68 227 136 HOH HOH A . G 4 HOH 69 228 137 HOH HOH A . G 4 HOH 70 229 138 HOH HOH A . H 4 HOH 1 160 1 HOH HOH B . H 4 HOH 2 161 2 HOH HOH B . H 4 HOH 3 162 4 HOH HOH B . H 4 HOH 4 163 6 HOH HOH B . H 4 HOH 5 164 7 HOH HOH B . H 4 HOH 6 165 10 HOH HOH B . H 4 HOH 7 166 12 HOH HOH B . H 4 HOH 8 167 14 HOH HOH B . H 4 HOH 9 168 15 HOH HOH B . H 4 HOH 10 169 18 HOH HOH B . H 4 HOH 11 170 21 HOH HOH B . H 4 HOH 12 171 22 HOH HOH B . H 4 HOH 13 172 24 HOH HOH B . H 4 HOH 14 173 25 HOH HOH B . H 4 HOH 15 174 27 HOH HOH B . H 4 HOH 16 175 33 HOH HOH B . H 4 HOH 17 176 34 HOH HOH B . H 4 HOH 18 177 40 HOH HOH B . H 4 HOH 19 178 41 HOH HOH B . H 4 HOH 20 179 43 HOH HOH B . H 4 HOH 21 180 44 HOH HOH B . H 4 HOH 22 181 46 HOH HOH B . H 4 HOH 23 182 47 HOH HOH B . H 4 HOH 24 183 48 HOH HOH B . H 4 HOH 25 184 49 HOH HOH B . H 4 HOH 26 185 50 HOH HOH B . H 4 HOH 27 186 51 HOH HOH B . H 4 HOH 28 187 52 HOH HOH B . H 4 HOH 29 188 53 HOH HOH B . H 4 HOH 30 189 56 HOH HOH B . H 4 HOH 31 190 57 HOH HOH B . H 4 HOH 32 191 58 HOH HOH B . H 4 HOH 33 192 61 HOH HOH B . H 4 HOH 34 193 66 HOH HOH B . H 4 HOH 35 194 69 HOH HOH B . H 4 HOH 36 195 70 HOH HOH B . H 4 HOH 37 196 71 HOH HOH B . H 4 HOH 38 197 72 HOH HOH B . H 4 HOH 39 198 73 HOH HOH B . H 4 HOH 40 199 74 HOH HOH B . H 4 HOH 41 200 75 HOH HOH B . H 4 HOH 42 201 76 HOH HOH B . H 4 HOH 43 202 78 HOH HOH B . H 4 HOH 44 203 85 HOH HOH B . H 4 HOH 45 204 86 HOH HOH B . H 4 HOH 46 205 89 HOH HOH B . H 4 HOH 47 206 91 HOH HOH B . H 4 HOH 48 207 92 HOH HOH B . H 4 HOH 49 208 98 HOH HOH B . H 4 HOH 50 209 99 HOH HOH B . H 4 HOH 51 210 100 HOH HOH B . H 4 HOH 52 211 101 HOH HOH B . H 4 HOH 53 212 102 HOH HOH B . H 4 HOH 54 213 108 HOH HOH B . H 4 HOH 55 214 110 HOH HOH B . H 4 HOH 56 215 111 HOH HOH B . H 4 HOH 57 216 112 HOH HOH B . H 4 HOH 58 217 121 HOH HOH B . H 4 HOH 59 218 122 HOH HOH B . H 4 HOH 60 219 123 HOH HOH B . H 4 HOH 61 220 124 HOH HOH B . H 4 HOH 62 221 125 HOH HOH B . H 4 HOH 63 222 126 HOH HOH B . H 4 HOH 64 223 133 HOH HOH B . H 4 HOH 65 224 134 HOH HOH B . #