HEADER LYASE 06-JAN-11 3Q8H TITLE CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE TITLE 2 SYNTHASE FROM BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH CYTIDINE TITLE 3 DERIVATIVE EBSI01028 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MECDP-SYNTHASE, MECPS; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: ISPF, MECS, BPSL2098; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 ISPF, MEP PATHWAY, LYASE, METAL-BINDING, ISOPRENE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3Q8H 1 REMARK SEQADV LINK REVDAT 3 11-DEC-13 3Q8H 1 JRNL REMARK REVDAT 2 30-OCT-13 3Q8H 1 JRNL VERSN REVDAT 1 19-JAN-11 3Q8H 0 JRNL AUTH Z.ZHANG,S.JAKKARAJU,J.BLAIN,K.GOGOL,L.ZHAO,R.C.HARTLEY, JRNL AUTH 2 C.A.KARLSSON,B.L.STAKER,T.E.EDWARDS,L.J.STEWART,P.J.MYLER, JRNL AUTH 3 M.CLARE,D.W.BEGLEY,J.R.HORN,T.J.HAGEN JRNL TITL CYTIDINE DERIVATIVES AS ISPF INHIBITORS OF BURKOLDERIA JRNL TITL 2 PSEUDOMALLEI. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 6860 2013 JRNL REFN ISSN 0960-894X JRNL PMID 24157367 JRNL DOI 10.1016/J.BMCL.2013.09.101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, REMARK 1 AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, REMARK 1 AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, REMARK 1 AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, REMARK 1 AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, REMARK 1 AUTH 6 W.C.VAN VOORHIS REMARK 1 TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE REMARK 1 TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. REMARK 1 REF PLOS ONE V. 8 53851 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23382856 REMARK 1 DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 46844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2359 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3590 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4880 ; 1.884 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 5.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;31.052 ;22.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;12.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2754 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2303 ; 0.814 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3632 ; 1.374 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 2.152 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1247 ; 3.415 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9406 -33.4397 -12.3642 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0207 REMARK 3 T33: 0.1025 T12: 0.0085 REMARK 3 T13: -0.0118 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.4686 L22: 1.4185 REMARK 3 L33: 1.3868 L12: 0.8422 REMARK 3 L13: 0.6003 L23: 0.6773 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: 0.0370 S13: 0.1998 REMARK 3 S21: -0.2159 S22: -0.0138 S23: 0.1500 REMARK 3 S31: -0.1488 S32: 0.0332 S33: 0.0799 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8039 -25.9287 -1.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1127 REMARK 3 T33: 0.2242 T12: 0.0588 REMARK 3 T13: -0.0222 T23: -0.1460 REMARK 3 L TENSOR REMARK 3 L11: 4.2914 L22: 2.6309 REMARK 3 L33: 0.4411 L12: 2.1196 REMARK 3 L13: -0.0852 L23: -0.3765 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: -0.4344 S13: 0.6247 REMARK 3 S21: 0.0781 S22: -0.1993 S23: 0.3940 REMARK 3 S31: -0.1742 S32: -0.1519 S33: 0.1555 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4575 -38.8116 -15.1239 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0850 REMARK 3 T33: 0.0701 T12: -0.0005 REMARK 3 T13: 0.0059 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.1680 L22: 0.3106 REMARK 3 L33: 1.3131 L12: 0.0400 REMARK 3 L13: 0.2485 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0630 S13: 0.0419 REMARK 3 S21: -0.0099 S22: 0.0456 S23: 0.0020 REMARK 3 S31: 0.0296 S32: -0.1500 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8281 -37.2114 0.4855 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.1171 REMARK 3 T33: 0.0430 T12: 0.0188 REMARK 3 T13: 0.0124 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.9866 L22: 1.3773 REMARK 3 L33: 1.3604 L12: 0.7789 REMARK 3 L13: -0.3047 L23: -0.5871 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.4122 S13: 0.0545 REMARK 3 S21: 0.1354 S22: -0.0694 S23: -0.0402 REMARK 3 S31: -0.0374 S32: -0.0014 S33: 0.0276 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5632 -36.0063 -4.6412 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.0428 REMARK 3 T33: 0.0849 T12: 0.0160 REMARK 3 T13: -0.0003 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.0887 L22: 2.3585 REMARK 3 L33: 1.0810 L12: 1.8686 REMARK 3 L13: 0.0545 L23: -0.4404 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.1657 S13: 0.0278 REMARK 3 S21: 0.1145 S22: -0.0904 S23: -0.0342 REMARK 3 S31: -0.0180 S32: 0.0708 S33: 0.0675 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0877 -40.1334 -13.4779 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0520 REMARK 3 T33: 0.0765 T12: -0.0013 REMARK 3 T13: 0.0100 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.7689 L22: 6.2621 REMARK 3 L33: 1.9479 L12: 2.0323 REMARK 3 L13: 1.3111 L23: 2.8285 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0479 S13: 0.0413 REMARK 3 S21: -0.0692 S22: -0.0387 S23: -0.0384 REMARK 3 S31: 0.0542 S32: 0.0355 S33: 0.0271 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3163 -34.4697 -28.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.2359 REMARK 3 T33: 0.0850 T12: -0.0354 REMARK 3 T13: 0.0497 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 1.5026 L22: 2.4898 REMARK 3 L33: 1.0959 L12: -0.0296 REMARK 3 L13: 0.9131 L23: -0.3675 REMARK 3 S TENSOR REMARK 3 S11: -0.1528 S12: 0.5328 S13: 0.1064 REMARK 3 S21: -0.1164 S22: 0.0382 S23: -0.3128 REMARK 3 S31: -0.0433 S32: 0.3547 S33: 0.1146 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4142 -37.8975 -28.0512 REMARK 3 T TENSOR REMARK 3 T11: 0.0589 T22: 0.3845 REMARK 3 T33: 0.0637 T12: -0.0167 REMARK 3 T13: 0.0508 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.6213 L22: 1.5045 REMARK 3 L33: 1.2242 L12: -0.7801 REMARK 3 L13: 0.6126 L23: -1.2621 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.7674 S13: 0.0328 REMARK 3 S21: -0.1401 S22: -0.0408 S23: -0.1715 REMARK 3 S31: 0.1264 S32: 0.1653 S33: 0.1024 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9632 -44.0946 -31.9157 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2758 REMARK 3 T33: 0.1659 T12: 0.0522 REMARK 3 T13: 0.1594 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 16.7276 L22: 5.5898 REMARK 3 L33: 20.6346 L12: 0.5221 REMARK 3 L13: -1.6176 L23: 8.2146 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 1.2988 S13: -0.1264 REMARK 3 S21: -0.7258 S22: 0.2643 S23: -0.6912 REMARK 3 S31: -0.7747 S32: 0.2496 S33: -0.3412 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3197 -41.2282 -30.7434 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.2133 REMARK 3 T33: 0.0211 T12: -0.0062 REMARK 3 T13: 0.0205 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7305 L22: 1.4564 REMARK 3 L33: 0.6274 L12: -0.0469 REMARK 3 L13: 0.6148 L23: -0.2216 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.5204 S13: 0.0043 REMARK 3 S21: -0.1679 S22: 0.0534 S23: 0.0683 REMARK 3 S31: 0.0260 S32: 0.2133 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 137 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8288 -21.5418 -16.7722 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.0203 REMARK 3 T33: 0.1675 T12: -0.0395 REMARK 3 T13: -0.0689 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 7.6691 L22: 3.4797 REMARK 3 L33: 4.2589 L12: 1.0306 REMARK 3 L13: 1.3258 L23: -0.2962 REMARK 3 S TENSOR REMARK 3 S11: -0.2743 S12: 0.0875 S13: 0.5831 REMARK 3 S21: -0.0824 S22: 0.1293 S23: 0.0799 REMARK 3 S31: -0.2615 S32: 0.1057 S33: 0.1450 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 145 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3570 -39.5948 -22.7035 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1702 REMARK 3 T33: 0.1021 T12: 0.0101 REMARK 3 T13: 0.0297 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7090 L22: 18.4351 REMARK 3 L33: 0.6906 L12: 2.6813 REMARK 3 L13: 0.6041 L23: -0.6959 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.3854 S13: 0.0336 REMARK 3 S21: -0.2098 S22: 0.0444 S23: -0.1265 REMARK 3 S31: 0.0455 S32: 0.2586 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5964 -40.6476 -7.1726 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.0873 REMARK 3 T33: 0.0787 T12: 0.0113 REMARK 3 T13: -0.0225 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.8820 L22: 3.4914 REMARK 3 L33: 0.0857 L12: 2.9141 REMARK 3 L13: 0.4303 L23: 0.3757 REMARK 3 S TENSOR REMARK 3 S11: 0.1068 S12: -0.1241 S13: 0.0455 REMARK 3 S21: 0.1670 S22: -0.1026 S23: -0.0965 REMARK 3 S31: 0.0733 S32: 0.0282 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 38 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4039 -38.4923 -5.5537 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0964 REMARK 3 T33: 0.1458 T12: 0.0073 REMARK 3 T13: -0.0647 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.0943 L22: 10.5606 REMARK 3 L33: 2.3705 L12: -0.1155 REMARK 3 L13: 0.6434 L23: 1.2340 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: -0.3005 S13: 0.1443 REMARK 3 S21: 0.3520 S22: 0.0570 S23: -0.5178 REMARK 3 S31: -0.0415 S32: 0.2709 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 39 C 60 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2697 -45.3947 -3.4475 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.0804 REMARK 3 T33: 0.1166 T12: 0.0425 REMARK 3 T13: -0.0233 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.4122 L22: 0.3850 REMARK 3 L33: 0.6154 L12: -0.0100 REMARK 3 L13: 0.0193 L23: -0.1864 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1607 S13: -0.1428 REMARK 3 S21: 0.1129 S22: -0.0008 S23: -0.1256 REMARK 3 S31: 0.0536 S32: 0.0153 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 61 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6299 -46.1353 7.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.1549 REMARK 3 T33: 0.1434 T12: 0.1569 REMARK 3 T13: -0.1856 T23: -0.1170 REMARK 3 L TENSOR REMARK 3 L11: 3.4135 L22: 5.4454 REMARK 3 L33: 9.6158 L12: -1.3478 REMARK 3 L13: -5.1024 L23: -0.9602 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: -0.3524 S13: 0.2533 REMARK 3 S21: 0.9058 S22: 0.1688 S23: -0.4944 REMARK 3 S31: -0.4832 S32: 0.3587 S33: -0.0243 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 76 C 121 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1706 -49.4774 -9.2882 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.0512 REMARK 3 T33: 0.1062 T12: 0.0601 REMARK 3 T13: -0.0044 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.8648 L22: 1.3649 REMARK 3 L33: 1.0448 L12: 0.4286 REMARK 3 L13: 0.1749 L23: -0.5620 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.0816 S13: -0.2166 REMARK 3 S21: -0.0473 S22: -0.0191 S23: -0.2175 REMARK 3 S31: 0.1714 S32: 0.1666 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 122 C 158 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2300 -41.7901 -14.2927 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0682 REMARK 3 T33: 0.0934 T12: 0.0178 REMARK 3 T13: 0.0035 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2598 L22: 1.5179 REMARK 3 L33: 0.8420 L12: 0.1009 REMARK 3 L13: 0.3004 L23: -0.1006 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.1838 S13: -0.0409 REMARK 3 S21: -0.0028 S22: -0.0083 S23: -0.1686 REMARK 3 S31: 0.0522 S32: 0.2199 S33: 0.0228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3Q8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KE1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 MG/ML PROTEIN IN 20% PEG 4000, 100 REMARK 280 MM TRIS, 200 MM NACL. CRYSTALS SOAKED IN SAME CONDITIONS WITH 20 REMARK 280 MM LIGAND AND 5 MM ZNCL2 FOR 3 WEEKS. , PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.84500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.84500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 167 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 227 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 65 REMARK 465 THR A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ARG A 69 REMARK 465 PHE A 70 REMARK 465 LYS A 71 REMARK 465 GLY A 72 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 64 REMARK 465 ASP B 65 REMARK 465 THR B 66 REMARK 465 ASP B 67 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 MET C -20 REMARK 465 ALA C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 MET C -12 REMARK 465 GLY C -11 REMARK 465 THR C -10 REMARK 465 LEU C -9 REMARK 465 GLU C -8 REMARK 465 ALA C -7 REMARK 465 GLN C -6 REMARK 465 THR C -5 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 ALA C 161 REMARK 465 ALA C 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 37 OG REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 SER B 37 OG REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 MET C 1 CG SD CE REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 SER C 37 OG REMARK 470 SER C 64 OG REMARK 470 ASP C 65 CG OD1 OD2 REMARK 470 THR C 66 OG1 CG2 REMARK 470 LYS C 71 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 288 O HOH B 166 2.01 REMARK 500 OD2 ASP A 127 O HOH A 250 2.15 REMARK 500 O HOH A 195 O HOH C 224 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 145.24 -170.56 REMARK 500 SER A 37 -131.85 59.50 REMARK 500 ASP B 2 68.12 -100.02 REMARK 500 SER B 37 -138.25 54.90 REMARK 500 ASP B 40 92.87 -68.44 REMARK 500 TYR C 29 148.75 -177.44 REMARK 500 SER C 37 -132.51 56.00 REMARK 500 LYS C 138 19.20 57.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 HIS A 12 NE2 105.6 REMARK 620 3 HIS A 44 ND1 100.4 119.4 REMARK 620 4 HOH B 166 O 118.5 110.6 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 170 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 285 O REMARK 620 2 HOH B 286 O 96.0 REMARK 620 3 HOH C 287 O 101.5 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 195 O REMARK 620 2 ASP C 10 OD2 118.3 REMARK 620 3 HIS C 12 NE2 112.4 99.5 REMARK 620 4 HIS C 44 ND1 106.3 102.4 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 HIS B 12 NE2 96.9 REMARK 620 3 HIS B 44 ND1 100.8 123.7 REMARK 620 4 HOH B 291 O 118.5 113.8 103.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AO9 A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AO9 A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AO9 B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 163 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0D RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3IKF RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL717 REMARK 900 RELATED ID: 3IKE RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTOSINE REMARK 900 RELATED ID: 3IEQ RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTIDINE REMARK 900 RELATED ID: 3KE1 RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTIDINE DERIVATIVE D161829 REMARK 900 RELATED ID: 3MBM RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTOSINE AND FOL717 REMARK 900 RELATED ID: 3P0Z RELATED DB: PDB REMARK 900 STRUCTURE WITH CYTIDINE AND FOL955 REMARK 900 RELATED ID: 3JVH RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL8395 REMARK 900 RELATED ID: 3K14 RELATED DB: PDB REMARK 900 STRUCTURE WITH FOL535 REMARK 900 RELATED ID: BUPSA.00122.A RELATED DB: TARGETDB DBREF 3Q8H A 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3Q8H B 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3Q8H C 1 162 UNP Q63T71 ISPF_BURPS 1 162 SEQADV 3Q8H MET A -20 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA A -19 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -18 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -17 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -16 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -15 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -14 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS A -13 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H MET A -12 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY A -11 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR A -10 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H LEU A -9 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLU A -8 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA A -7 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN A -6 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR A -5 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN A -4 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY A -3 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H PRO A -2 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY A -1 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H SER A 0 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H MET B -20 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA B -19 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -18 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -17 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -16 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -15 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -14 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS B -13 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H MET B -12 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY B -11 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR B -10 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H LEU B -9 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLU B -8 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA B -7 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN B -6 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR B -5 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN B -4 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY B -3 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H PRO B -2 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY B -1 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H SER B 0 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H MET C -20 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA C -19 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -18 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -17 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -16 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -15 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -14 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H HIS C -13 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H MET C -12 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY C -11 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR C -10 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H LEU C -9 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLU C -8 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H ALA C -7 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN C -6 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H THR C -5 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLN C -4 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY C -3 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H PRO C -2 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H GLY C -1 UNP Q63T71 EXPRESSION TAG SEQADV 3Q8H SER C 0 UNP Q63T71 EXPRESSION TAG SEQRES 1 A 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 A 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 A 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 A 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 A 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 A 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 A 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 A 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 A 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 A 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 A 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 A 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 A 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 A 183 ALA SEQRES 1 B 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 B 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 B 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 B 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 B 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 B 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 B 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 B 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 B 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 B 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 B 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 B 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 B 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 B 183 ALA SEQRES 1 C 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 C 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 C 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 C 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 C 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 C 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 C 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 C 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 C 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 C 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 C 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 C 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 C 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 C 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 C 183 ALA HET ZN A 163 1 HET AO9 A 165 27 HET K A 170 1 HET EDO A 172 4 HET EDO A 173 4 HET AO9 A 164 27 HET ZN B 163 1 HET AO9 B 165 27 HET ZN C 163 1 HETNAM ZN ZINC ION HETNAM AO9 5'-DEOXY-5'-[(IMIDAZO[2,1-B][1,3]THIAZOL-5-YLCARBONYL) HETNAM 2 AO9 AMINO]CYTIDINE HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 AO9 3(C15 H16 N6 O5 S) FORMUL 6 K K 1+ FORMUL 7 EDO 2(C2 H6 O2) FORMUL 13 HOH *306(H2 O) HELIX 1 1 ASP A 40 ALA A 54 1 15 HELIX 2 2 ASP A 58 PHE A 63 1 6 HELIX 3 3 ASP A 74 ALA A 89 1 16 HELIX 4 4 LEU A 107 ASP A 123 1 17 HELIX 5 5 PRO A 125 VAL A 129 5 5 HELIX 6 6 LEU A 139 ARG A 144 1 6 HELIX 7 7 ASP B 40 ALA B 54 1 15 HELIX 8 8 ASP B 58 PHE B 63 1 6 HELIX 9 9 ASP B 74 ALA B 89 1 16 HELIX 10 10 LEU B 107 PRO B 109 5 3 HELIX 11 11 HIS B 110 ASP B 123 1 14 HELIX 12 12 PRO B 125 VAL B 129 5 5 HELIX 13 13 LEU B 139 ARG B 144 1 6 HELIX 14 14 ASP C 40 ALA C 54 1 15 HELIX 15 15 ASP C 58 PHE C 63 1 6 HELIX 16 16 ASP C 74 ALA C 89 1 16 HELIX 17 17 LEU C 107 PRO C 109 5 3 HELIX 18 18 HIS C 110 ASP C 123 1 14 HELIX 19 19 PRO C 125 VAL C 129 5 5 HELIX 20 20 LEU C 139 ARG C 144 1 6 SHEET 1 A 5 ARG A 31 LEU A 33 0 SHEET 2 A 5 ASP A 2 PRO A 16 -1 N VAL A 15 O GLY A 32 SHEET 3 A 5 GLY A 147 ARG A 158 -1 O ARG A 158 N ASP A 2 SHEET 4 A 5 PHE A 91 ILE A 101 -1 N ILE A 101 O GLU A 149 SHEET 5 A 5 LYS A 132 LYS A 134 1 O LYS A 132 N ILE A 100 SHEET 1 B 2 LEU A 20 ILE A 22 0 SHEET 2 B 2 VAL A 25 ILE A 27 -1 O ILE A 27 N LEU A 20 SHEET 1 C 5 ARG B 31 LEU B 34 0 SHEET 2 C 5 PHE B 3 PRO B 16 -1 N VAL B 15 O GLY B 32 SHEET 3 C 5 GLY B 147 ARG B 158 -1 O ALA B 152 N GLY B 8 SHEET 4 C 5 PHE B 91 ILE B 101 -1 N ALA B 92 O VAL B 157 SHEET 5 C 5 LYS B 132 LYS B 134 1 O LYS B 134 N ILE B 100 SHEET 1 D 2 LEU B 20 ILE B 22 0 SHEET 2 D 2 VAL B 25 ILE B 27 -1 O ILE B 27 N LEU B 20 SHEET 1 E 5 ARG C 31 LEU C 33 0 SHEET 2 E 5 PHE C 3 PRO C 16 -1 N VAL C 15 O GLY C 32 SHEET 3 E 5 GLY C 147 VAL C 157 -1 O ALA C 150 N ASP C 10 SHEET 4 E 5 ALA C 92 ILE C 101 -1 N ARG C 94 O LEU C 155 SHEET 5 E 5 LYS C 132 LYS C 134 1 O LYS C 134 N ILE C 100 SHEET 1 F 2 LEU C 20 ILE C 22 0 SHEET 2 F 2 VAL C 25 ILE C 27 -1 O ILE C 27 N LEU C 20 LINK OD2 ASP A 10 ZN ZN A 163 1555 1555 2.04 LINK NE2 HIS A 12 ZN ZN A 163 1555 1555 2.06 LINK ND1 HIS A 44 ZN ZN A 163 1555 1555 2.05 LINK ZN ZN A 163 O HOH B 166 1555 1555 2.42 LINK K K A 170 O HOH A 285 1555 1555 2.67 LINK K K A 170 O HOH B 286 1555 1555 2.71 LINK K K A 170 O HOH C 287 1555 1555 2.96 LINK O HOH A 195 ZN ZN C 163 1555 1555 2.06 LINK OD2 ASP B 10 ZN ZN B 163 1555 1555 2.05 LINK NE2 HIS B 12 ZN ZN B 163 1555 1555 1.90 LINK ND1 HIS B 44 ZN ZN B 163 1555 1555 1.95 LINK ZN ZN B 163 O HOH B 291 1555 1555 2.21 LINK OD2 ASP C 10 ZN ZN C 163 1555 1555 2.05 LINK NE2 HIS C 12 ZN ZN C 163 1555 1555 2.00 LINK ND1 HIS C 44 ZN ZN C 163 1555 1555 2.03 CISPEP 1 ALA A 104 PRO A 105 0 -3.27 CISPEP 2 ALA B 104 PRO B 105 0 -0.46 CISPEP 3 ALA C 104 PRO C 105 0 -4.79 SITE 1 AC1 4 ASP A 10 HIS A 12 HIS A 44 HOH B 166 SITE 1 AC2 17 HIS A 36 ASP A 58 ILE A 59 GLY A 60 SITE 2 AC2 17 PHE A 63 HOH A 169 HOH A 171 HOH A 180 SITE 3 AC2 17 HOH A 209 ALA B 102 PRO B 105 LYS B 106 SITE 4 AC2 17 LEU B 107 ALA B 108 ALA B 133 LYS B 134 SITE 5 AC2 17 HOH B 166 SITE 1 AC3 3 HOH A 285 HOH B 286 HOH C 287 SITE 1 AC4 3 ALA A 120 ASP A 121 HOH A 224 SITE 1 AC5 5 ALA A 92 ILE A 93 LEU A 122 ASP A 123 SITE 2 AC5 5 HOH A 259 SITE 1 AC6 17 ALA A 102 PRO A 105 LYS A 106 LEU A 107 SITE 2 AC6 17 ALA A 108 ALA A 133 LYS A 134 THR A 135 SITE 3 AC6 17 HOH A 195 HOH A 266 HOH A 293 HIS C 36 SITE 4 AC6 17 ASP C 58 ILE C 59 GLY C 60 ARG C 61 SITE 5 AC6 17 PHE C 63 SITE 1 AC7 4 ASP B 10 HIS B 12 HIS B 44 HOH B 291 SITE 1 AC8 18 HIS B 36 ASP B 58 ILE B 59 GLY B 60 SITE 2 AC8 18 ARG B 61 PHE B 63 LEU B 78 HOH B 175 SITE 3 AC8 18 HOH B 178 HOH B 290 HOH B 291 ALA C 102 SITE 4 AC8 18 PRO C 105 LYS C 106 LEU C 107 ALA C 108 SITE 5 AC8 18 ALA C 133 LYS C 134 SITE 1 AC9 4 HOH A 195 ASP C 10 HIS C 12 HIS C 44 CRYST1 117.690 67.760 60.020 90.00 96.02 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008497 0.000000 0.000895 0.00000 SCALE2 0.000000 0.014758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016753 0.00000