HEADER HYDROLASE 07-JAN-11 3Q93 TITLE CRYSTAL STRUCTURE OF HUMAN 8-OXO-DGTPASE (MTH1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXO-DGTPASE, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF COMPND 5 1, NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTH1, NUDT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, NUDIX, KEYWDS 2 MUTT-LIKE, HYDROLASE, MAGNESIUM BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, AUTHOR 2 R.COLLINS,A.M.EDWARDS,T.EKBLAD,S.FLODIN,A.FLORES,S.GRASLUND, AUTHOR 3 M.HAMMARSTROM,I.JOHANSSON,T.KARLBERG,S.KOL,T.KOTENYOVA, AUTHOR 4 E.KOUZNETSOVA,M.MOCHE,T.NYMAN,C.PERSSON,H.SCHULER,P.SCHUTZ, AUTHOR 5 A.G.THORSELL,S.VAN DER BERG,E.WAHLBERG,J.WEIGELT,M.WELIN,P.NORDLUND, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 13-SEP-23 3Q93 1 REMARK SEQADV REVDAT 1 02-MAR-11 3Q93 0 JRNL AUTH L.TRESAUGUES,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND, JRNL AUTH 2 C.BOUNTRA,R.COLLINS,A.M.EDWARDS,T.EKBLAD,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON,T.KARLBERG,S.KOL, JRNL AUTH 4 T.KOTENYOVA,E.KOUZNETSOVA,M.MOCHE,T.NYMAN,C.PERSSON, JRNL AUTH 5 H.SCHULER,P.SCHUTZ,A.G.THORSELL,S.VAN DER BERG,E.WAHLBERG, JRNL AUTH 6 J.WEIGELT,M.WELIN,P.NORDLUND JRNL TITL CRYSTAL STRUCTURE OF HUMAN 8-OXO-DGTPASE (MTH1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 31318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9636 - 3.8763 1.00 3180 172 0.1815 0.1678 REMARK 3 2 3.8763 - 3.0774 1.00 3000 175 0.1829 0.2410 REMARK 3 3 3.0774 - 2.6885 0.99 2997 170 0.2037 0.2832 REMARK 3 4 2.6885 - 2.4428 0.99 2983 145 0.2055 0.2450 REMARK 3 5 2.4428 - 2.2677 0.99 2944 168 0.2087 0.2429 REMARK 3 6 2.2677 - 2.1341 0.99 2963 153 0.2043 0.2339 REMARK 3 7 2.1341 - 2.0272 0.98 2947 142 0.2137 0.2421 REMARK 3 8 2.0272 - 1.9390 0.99 2911 166 0.2363 0.2973 REMARK 3 9 1.9390 - 1.8643 0.99 2916 150 0.2642 0.3163 REMARK 3 10 1.8643 - 1.8000 0.98 2890 146 0.3088 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 47.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.69570 REMARK 3 B22 (A**2) : -5.90600 REMARK 3 B33 (A**2) : 13.60170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2640 REMARK 3 ANGLE : 1.066 3574 REMARK 3 CHIRALITY : 0.066 368 REMARK 3 PLANARITY : 0.005 463 REMARK 3 DIHEDRAL : 12.921 981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:12) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1580 5.6408 11.9594 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1893 REMARK 3 T33: 0.1797 T12: -0.0033 REMARK 3 T13: -0.0075 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.7016 L22: 8.6255 REMARK 3 L33: 3.9524 L12: 0.7783 REMARK 3 L13: -0.4605 L23: -4.9026 REMARK 3 S TENSOR REMARK 3 S11: 0.2581 S12: 0.0502 S13: -0.5524 REMARK 3 S21: 0.0249 S22: -0.3230 S23: 0.1577 REMARK 3 S31: 0.0432 S32: 0.2671 S33: -0.0615 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:33) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0908 19.0664 14.1031 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1411 REMARK 3 T33: 0.0868 T12: -0.0009 REMARK 3 T13: 0.0364 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.9136 L22: 5.1968 REMARK 3 L33: 9.2121 L12: -0.0583 REMARK 3 L13: -2.6008 L23: -1.9739 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.1932 S13: 0.0513 REMARK 3 S21: 0.2385 S22: 0.1389 S23: 0.1313 REMARK 3 S31: -0.0525 S32: -0.4483 S33: -0.0764 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 34:54) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2724 8.3532 9.1532 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2288 REMARK 3 T33: 0.2090 T12: -0.0056 REMARK 3 T13: 0.0044 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 5.8155 L22: 2.8188 REMARK 3 L33: 0.1125 L12: 3.3846 REMARK 3 L13: 0.6012 L23: 0.6024 REMARK 3 S TENSOR REMARK 3 S11: 0.1893 S12: 0.2974 S13: 0.0913 REMARK 3 S21: 0.1316 S22: -0.2415 S23: 0.3838 REMARK 3 S31: 0.0427 S32: -0.1854 S33: 0.0127 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 55:69) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3613 12.7979 3.9887 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1931 REMARK 3 T33: 0.2123 T12: -0.0479 REMARK 3 T13: -0.0119 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.3668 L22: 7.3702 REMARK 3 L33: 4.2140 L12: -6.1690 REMARK 3 L13: -0.0486 L23: 1.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: 0.6619 S13: -0.1162 REMARK 3 S21: -0.4341 S22: -0.4063 S23: 0.5825 REMARK 3 S31: 0.0368 S32: -0.0680 S33: 0.1161 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 70:86) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4462 0.9117 16.7453 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.1648 REMARK 3 T33: 0.1258 T12: -0.0115 REMARK 3 T13: 0.0183 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.9870 L22: 5.5784 REMARK 3 L33: 9.8949 L12: -1.1221 REMARK 3 L13: 3.1107 L23: -6.9091 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: -0.1949 S13: -0.4119 REMARK 3 S21: 0.2082 S22: 0.0678 S23: 0.1988 REMARK 3 S31: -0.0606 S32: -0.3087 S33: -0.0831 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 87:108) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9612 22.4704 9.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.1738 REMARK 3 T33: 0.2487 T12: 0.0276 REMARK 3 T13: 0.0320 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 3.5251 L22: 3.9035 REMARK 3 L33: 0.3520 L12: 0.0801 REMARK 3 L13: 0.9997 L23: 0.7567 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.1643 S13: 0.5067 REMARK 3 S21: -0.2133 S22: -0.0111 S23: 0.5206 REMARK 3 S31: -0.1368 S32: -0.1851 S33: -0.1053 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 109:131) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4445 14.3967 10.8005 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.1345 REMARK 3 T33: 0.1383 T12: -0.0162 REMARK 3 T13: -0.0025 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.3775 L22: 5.4206 REMARK 3 L33: 2.8377 L12: -0.2969 REMARK 3 L13: -0.6771 L23: 0.4499 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.1360 S13: 0.2139 REMARK 3 S21: 0.0414 S22: -0.0515 S23: -0.3274 REMARK 3 S31: -0.1028 S32: 0.0282 S33: 0.0378 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 132:156) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0137 2.2244 12.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1079 REMARK 3 T33: 0.1119 T12: 0.0065 REMARK 3 T13: 0.0118 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 6.1839 L22: 4.2219 REMARK 3 L33: 2.3117 L12: -0.6854 REMARK 3 L13: 2.6957 L23: -1.6483 REMARK 3 S TENSOR REMARK 3 S11: 0.1242 S12: 0.1941 S13: -0.4402 REMARK 3 S21: 0.0288 S22: -0.0971 S23: -0.0810 REMARK 3 S31: 0.4260 S32: 0.3151 S33: -0.0816 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 3:12) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5606 -6.6848 10.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.2667 REMARK 3 T33: 0.5420 T12: -0.0203 REMARK 3 T13: -0.0928 T23: -0.1453 REMARK 3 L TENSOR REMARK 3 L11: 5.6885 L22: 9.0313 REMARK 3 L33: 4.8305 L12: -0.4083 REMARK 3 L13: -2.7385 L23: 5.8414 REMARK 3 S TENSOR REMARK 3 S11: 0.2690 S12: -0.0297 S13: -0.9371 REMARK 3 S21: 0.6810 S22: -0.7253 S23: 0.4696 REMARK 3 S31: 0.4500 S32: -0.3171 S33: 0.3212 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 13:31) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6552 -19.4117 7.2631 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.2155 REMARK 3 T33: 1.7255 T12: 0.0570 REMARK 3 T13: -0.2100 T23: -0.3101 REMARK 3 L TENSOR REMARK 3 L11: 2.1351 L22: 1.8034 REMARK 3 L33: 3.3439 L12: 0.9167 REMARK 3 L13: -3.0635 L23: -0.4138 REMARK 3 S TENSOR REMARK 3 S11: -0.2834 S12: 1.6646 S13: -4.2141 REMARK 3 S21: 0.0966 S22: -0.3102 S23: -0.7936 REMARK 3 S31: 0.1356 S32: -0.5197 S33: 0.1933 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 32:51) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4266 -8.6994 6.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.3097 REMARK 3 T33: 0.8203 T12: 0.0252 REMARK 3 T13: -0.1141 T23: -0.2397 REMARK 3 L TENSOR REMARK 3 L11: 2.6141 L22: 4.2747 REMARK 3 L33: 0.5401 L12: -1.6006 REMARK 3 L13: -0.8476 L23: 0.5792 REMARK 3 S TENSOR REMARK 3 S11: 0.3185 S12: 0.7461 S13: -1.8328 REMARK 3 S21: 0.2303 S22: -0.1860 S23: -0.1099 REMARK 3 S31: -0.1536 S32: -0.0195 S33: 0.0483 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 52:69) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2976 -10.6147 0.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.6090 REMARK 3 T33: 0.9127 T12: 0.0701 REMARK 3 T13: -0.0939 T23: -0.5843 REMARK 3 L TENSOR REMARK 3 L11: 4.9523 L22: 4.7491 REMARK 3 L33: 3.1447 L12: -1.9667 REMARK 3 L13: -3.3827 L23: -0.1051 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 1.9546 S13: -2.3411 REMARK 3 S21: -0.1338 S22: -0.5313 S23: -0.5047 REMARK 3 S31: -0.0640 S32: -0.3909 S33: 0.0734 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 70:88) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9101 -4.7564 15.7470 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.2003 REMARK 3 T33: 0.3510 T12: -0.0505 REMARK 3 T13: -0.1234 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 9.5561 L22: 0.8228 REMARK 3 L33: 8.5793 L12: -0.3250 REMARK 3 L13: -6.9808 L23: 0.6446 REMARK 3 S TENSOR REMARK 3 S11: 0.2328 S12: -0.3652 S13: -1.1243 REMARK 3 S21: 0.1716 S22: -0.3414 S23: -0.4860 REMARK 3 S31: -0.3430 S32: 0.7718 S33: 0.0934 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 89:107) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7074 -21.3978 0.7551 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.5193 REMARK 3 T33: 1.9862 T12: 0.0934 REMARK 3 T13: 0.0711 T23: -0.7744 REMARK 3 L TENSOR REMARK 3 L11: 9.7689 L22: 5.5502 REMARK 3 L33: 2.8929 L12: -0.7258 REMARK 3 L13: -0.9836 L23: 1.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 1.6764 S13: -4.5899 REMARK 3 S21: 0.1010 S22: -0.7373 S23: 0.0111 REMARK 3 S31: 0.9507 S32: -0.8651 S33: 0.5895 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 108:130) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1632 -14.1480 7.9517 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.2945 REMARK 3 T33: 1.0479 T12: 0.0307 REMARK 3 T13: -0.0973 T23: -0.3196 REMARK 3 L TENSOR REMARK 3 L11: 7.9516 L22: 1.3929 REMARK 3 L33: 1.3313 L12: 0.7541 REMARK 3 L13: -0.3755 L23: 0.2653 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: 0.8587 S13: -2.3739 REMARK 3 S21: 0.0428 S22: -0.1924 S23: -0.1191 REMARK 3 S31: 0.2252 S32: -0.0511 S33: -0.0484 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 131:156) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7949 -3.3506 14.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.2083 T22: 0.1657 REMARK 3 T33: 0.2505 T12: -0.0005 REMARK 3 T13: -0.0632 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 9.1717 L22: 3.8197 REMARK 3 L33: 6.9802 L12: -0.1602 REMARK 3 L13: -1.2959 L23: -3.8918 REMARK 3 S TENSOR REMARK 3 S11: 0.2857 S12: 0.0036 S13: -0.5784 REMARK 3 S21: 0.2096 S22: -0.2258 S23: -0.1671 REMARK 3 S31: -0.2195 S32: -0.0207 S33: -0.1244 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 33.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : 0.70100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.26 M AMMONIUM SULFATE, 22 % W/V REMARK 280 PEG4000, 13 % GLYCEROL, PH 7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.77200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.33900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.84050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.33900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.77200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.84050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 90 52.82 -141.45 REMARK 500 SER B 90 110.21 -175.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 158 DBREF 3Q93 A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 3Q93 B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 3Q93 MET A -19 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY A -18 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER A -17 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER A -16 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -15 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -14 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -13 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -12 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -11 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A -10 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER A -9 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER A -8 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY A -7 UNP P36639 EXPRESSION TAG SEQADV 3Q93 LEU A -6 UNP P36639 EXPRESSION TAG SEQADV 3Q93 VAL A -5 UNP P36639 EXPRESSION TAG SEQADV 3Q93 PRO A -4 UNP P36639 EXPRESSION TAG SEQADV 3Q93 ARG A -3 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY A -2 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER A -1 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS A 0 UNP P36639 EXPRESSION TAG SEQADV 3Q93 MET B -19 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY B -18 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER B -17 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER B -16 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -15 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -14 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -13 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -12 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -11 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B -10 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER B -9 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER B -8 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY B -7 UNP P36639 EXPRESSION TAG SEQADV 3Q93 LEU B -6 UNP P36639 EXPRESSION TAG SEQADV 3Q93 VAL B -5 UNP P36639 EXPRESSION TAG SEQADV 3Q93 PRO B -4 UNP P36639 EXPRESSION TAG SEQADV 3Q93 ARG B -3 UNP P36639 EXPRESSION TAG SEQADV 3Q93 GLY B -2 UNP P36639 EXPRESSION TAG SEQADV 3Q93 SER B -1 UNP P36639 EXPRESSION TAG SEQADV 3Q93 HIS B 0 UNP P36639 EXPRESSION TAG SEQRES 1 A 176 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 176 LEU VAL PRO ARG GLY SER HIS MET GLY ALA SER ARG LEU SEQRES 3 A 176 TYR THR LEU VAL LEU VAL LEU GLN PRO GLN ARG VAL LEU SEQRES 4 A 176 LEU GLY MET LYS LYS ARG GLY PHE GLY ALA GLY ARG TRP SEQRES 5 A 176 ASN GLY PHE GLY GLY LYS VAL GLN GLU GLY GLU THR ILE SEQRES 6 A 176 GLU ASP GLY ALA ARG ARG GLU LEU GLN GLU GLU SER GLY SEQRES 7 A 176 LEU THR VAL ASP ALA LEU HIS LYS VAL GLY GLN ILE VAL SEQRES 8 A 176 PHE GLU PHE VAL GLY GLU PRO GLU LEU MET ASP VAL HIS SEQRES 9 A 176 VAL PHE CYS THR ASP SER ILE GLN GLY THR PRO VAL GLU SEQRES 10 A 176 SER ASP GLU MET ARG PRO CYS TRP PHE GLN LEU ASP GLN SEQRES 11 A 176 ILE PRO PHE LYS ASP MET TRP PRO ASP ASP SER TYR TRP SEQRES 12 A 176 PHE PRO LEU LEU LEU GLN LYS LYS LYS PHE HIS GLY TYR SEQRES 13 A 176 PHE LYS PHE GLN GLY GLN ASP THR ILE LEU ASP TYR THR SEQRES 14 A 176 LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 176 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 176 LEU VAL PRO ARG GLY SER HIS MET GLY ALA SER ARG LEU SEQRES 3 B 176 TYR THR LEU VAL LEU VAL LEU GLN PRO GLN ARG VAL LEU SEQRES 4 B 176 LEU GLY MET LYS LYS ARG GLY PHE GLY ALA GLY ARG TRP SEQRES 5 B 176 ASN GLY PHE GLY GLY LYS VAL GLN GLU GLY GLU THR ILE SEQRES 6 B 176 GLU ASP GLY ALA ARG ARG GLU LEU GLN GLU GLU SER GLY SEQRES 7 B 176 LEU THR VAL ASP ALA LEU HIS LYS VAL GLY GLN ILE VAL SEQRES 8 B 176 PHE GLU PHE VAL GLY GLU PRO GLU LEU MET ASP VAL HIS SEQRES 9 B 176 VAL PHE CYS THR ASP SER ILE GLN GLY THR PRO VAL GLU SEQRES 10 B 176 SER ASP GLU MET ARG PRO CYS TRP PHE GLN LEU ASP GLN SEQRES 11 B 176 ILE PRO PHE LYS ASP MET TRP PRO ASP ASP SER TYR TRP SEQRES 12 B 176 PHE PRO LEU LEU LEU GLN LYS LYS LYS PHE HIS GLY TYR SEQRES 13 B 176 PHE LYS PHE GLN GLY GLN ASP THR ILE LEU ASP TYR THR SEQRES 14 B 176 LEU ARG GLU VAL ASP THR VAL HET SO4 A 157 5 HET SO4 A 158 5 HET SO4 A 159 5 HET IMD A 160 5 HET GOL A 161 6 HET GOL A 162 6 HET SO4 B 157 5 HET SO4 B 158 5 HETNAM SO4 SULFATE ION HETNAM IMD IMIDAZOLE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 6 IMD C3 H5 N2 1+ FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *215(H2 O) HELIX 1 1 THR A 44 GLY A 58 1 15 HELIX 2 2 PRO A 112 MET A 116 5 5 HELIX 3 3 TRP A 117 PRO A 118 5 2 HELIX 4 4 ASP A 119 GLN A 129 1 11 HELIX 5 5 THR B 44 GLY B 58 1 15 HELIX 6 6 ASP B 109 ILE B 111 5 3 HELIX 7 7 PRO B 112 MET B 116 5 5 HELIX 8 8 TRP B 117 PRO B 118 5 2 HELIX 9 9 ASP B 119 GLN B 129 1 11 SITE 1 AC1 7 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC1 7 SER A 90 HOH A 233 HOH A 301 SITE 1 AC2 3 HIS A 65 LYS A 66 HOH A 238 SITE 1 AC3 4 ARG A 17 TRP A 105 HOH A 276 LYS B 132 SITE 1 AC4 6 ASN A 33 PHE A 72 TRP A 117 ASP A 119 SITE 2 AC4 6 HOH A 191 HOH A 277 SITE 1 AC5 8 LYS A 23 LYS A 24 GLY A 30 HOH A 181 SITE 2 AC5 8 HOH A 240 HOH A 245 HOH A 288 HOH A 298 SITE 1 AC6 7 LYS A 24 GLU A 97 TYR A 136 LYS A 138 SITE 2 AC6 7 ASP A 147 TYR B 122 TYR B 148 SITE 1 AC7 4 HOH A 225 HIS B 134 ARG B 151 HOH B 214 SITE 1 AC8 6 HOH A 302 ARG B 151 VAL B 153 ASP B 154 SITE 2 AC8 6 THR B 155 HOH B 166 CRYST1 59.544 67.681 82.678 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012095 0.00000