HEADER PROTEIN FIBRIL 07-JAN-11 3Q9H TITLE LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED ON 42-MEMBERED TITLE 2 MACROCYCLE SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE LVFFA(ORN)(HAO)LK(ORN); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED COMPND 6 ON 42-MEMBERED MACROCYCLE SCAFFOLD SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS BETA SHEET TETRAMER, MACROCYCLIC PEPTIDE, BETA-SHEET MIMETIC, PROTEIN KEYWDS 2 FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,M.R.SAWAYA,D.EISENBERG,J.S.NOWICK,P.CHENG,J.ZHENG REVDAT 2 15-NOV-23 3Q9H 1 REMARK LINK ATOM REVDAT 1 08-JUN-11 3Q9H 0 JRNL AUTH C.LIU,M.R.SAWAYA,P.N.CHENG,J.ZHENG,J.S.NOWICK,D.EISENBERG JRNL TITL CHARACTERISTICS OF AMYLOID-RELATED OLIGOMERS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF MACROCYCLIC BETA-SHEET MIMICS. JRNL REF J.AM.CHEM.SOC. V. 133 6736 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21473620 JRNL DOI 10.1021/JA200222N REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 524 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2552 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1983 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2430 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.93160 REMARK 3 B22 (A**2) : -4.93160 REMARK 3 B33 (A**2) : 9.86330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.282 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 864 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 1121 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 154 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 32 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 152 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 673 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 56 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 777 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.27 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.27 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3845 5.8640 15.1520 REMARK 3 T TENSOR REMARK 3 T11: -0.1883 T22: -0.0414 REMARK 3 T33: -0.0387 T12: -0.0274 REMARK 3 T13: 0.1064 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.8002 L22: 0.0818 REMARK 3 L33: 1.2245 L12: 1.4216 REMARK 3 L13: 0.0835 L23: -1.5983 REMARK 3 S TENSOR REMARK 3 S11: -0.1646 S12: 0.3408 S13: -0.6631 REMARK 3 S21: -0.1124 S22: 0.1929 S23: -0.1022 REMARK 3 S31: 0.2669 S32: -0.3190 S33: -0.0282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.9392 3.2969 24.1903 REMARK 3 T TENSOR REMARK 3 T11: -0.1140 T22: 0.0117 REMARK 3 T33: 0.1158 T12: 0.0857 REMARK 3 T13: 0.1297 T23: 0.1416 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 2.0730 REMARK 3 L33: 3.4120 L12: -1.7311 REMARK 3 L13: 1.6921 L23: -1.3125 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.0459 S13: -0.7028 REMARK 3 S21: 0.1567 S22: -0.0452 S23: 0.2067 REMARK 3 S31: 0.1478 S32: 0.3194 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|1 - C|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.5173 9.3303 17.9787 REMARK 3 T TENSOR REMARK 3 T11: -0.2047 T22: -0.0078 REMARK 3 T33: -0.0637 T12: 0.0078 REMARK 3 T13: 0.0848 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.4453 L22: 1.5355 REMARK 3 L33: 1.5120 L12: -2.5467 REMARK 3 L13: 1.0439 L23: -0.1082 REMARK 3 S TENSOR REMARK 3 S11: -0.2106 S12: -0.0936 S13: -0.5387 REMARK 3 S21: 0.0758 S22: 0.0069 S23: 0.2759 REMARK 3 S31: 0.0510 S32: 0.4074 S33: 0.2037 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|1 - D|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.6610 9.0103 9.2575 REMARK 3 T TENSOR REMARK 3 T11: -0.1110 T22: 0.0420 REMARK 3 T33: -0.0065 T12: -0.0864 REMARK 3 T13: 0.1471 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 1.0818 L22: 1.9525 REMARK 3 L33: 1.7441 L12: -0.1654 REMARK 3 L13: 4.2378 L23: -0.8710 REMARK 3 S TENSOR REMARK 3 S11: -0.1960 S12: 0.2034 S13: -0.5318 REMARK 3 S21: -0.1484 S22: 0.3490 S23: -0.1600 REMARK 3 S31: 0.0128 S32: -0.2415 S33: -0.1530 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|1 - E|9 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.6109 12.6205 20.8457 REMARK 3 T TENSOR REMARK 3 T11: -0.0944 T22: 0.0744 REMARK 3 T33: -0.0469 T12: 0.0094 REMARK 3 T13: 0.0333 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1860 L22: 1.2492 REMARK 3 L33: 2.1630 L12: -1.1902 REMARK 3 L13: -0.1140 L23: 0.8713 REMARK 3 S TENSOR REMARK 3 S11: -0.1365 S12: 0.0187 S13: 0.1137 REMARK 3 S21: -0.0455 S22: 0.0732 S23: -0.0834 REMARK 3 S31: -0.0078 S32: 0.1939 S33: 0.0633 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|1 - F|9 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.3963 7.6775 28.7761 REMARK 3 T TENSOR REMARK 3 T11: -0.1095 T22: 0.0151 REMARK 3 T33: -0.1080 T12: -0.0387 REMARK 3 T13: 0.0610 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.2888 L22: 3.3386 REMARK 3 L33: 1.9037 L12: -0.3285 REMARK 3 L13: 1.2918 L23: 1.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.2023 S13: -0.2600 REMARK 3 S21: -0.0390 S22: -0.2096 S23: -0.2820 REMARK 3 S31: 0.0378 S32: -0.0757 S33: 0.2442 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { G|1 - G|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.6101 14.7884 4.7470 REMARK 3 T TENSOR REMARK 3 T11: -0.1276 T22: 0.0052 REMARK 3 T33: -0.1334 T12: 0.0231 REMARK 3 T13: 0.0305 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.8534 L22: 2.0312 REMARK 3 L33: 2.2976 L12: -1.7004 REMARK 3 L13: 0.4258 L23: -0.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: 0.2576 S13: 0.0397 REMARK 3 S21: 0.1210 S22: -0.0099 S23: -0.0452 REMARK 3 S31: -0.1121 S32: -0.1504 S33: 0.0913 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { H|1 - H|9 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.0621 17.6102 12.6777 REMARK 3 T TENSOR REMARK 3 T11: -0.0840 T22: 0.0624 REMARK 3 T33: -0.0429 T12: 0.0192 REMARK 3 T13: 0.0047 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.4472 L22: 1.4715 REMARK 3 L33: 4.5879 L12: 3.2657 REMARK 3 L13: 0.1073 L23: -0.9924 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: -0.1982 S13: 0.1241 REMARK 3 S21: 0.2988 S22: 0.0278 S23: 0.0865 REMARK 3 S31: -0.1420 S32: -0.2240 S33: 0.0576 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M MES PH 6.0, REMARK 280 20% 1,4-BUTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.86900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.30350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.43450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.30350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.43450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.86900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU D 1 O ORN D 10 2.17 REMARK 500 N LEU B 1 O ORN B 10 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HAO A 7 CA - C - N ANGL. DEV. = 25.7 DEGREES REMARK 500 HAO B 7 CA - C - N ANGL. DEV. = 18.6 DEGREES REMARK 500 HAO C 7 CA - C - N ANGL. DEV. = 25.4 DEGREES REMARK 500 HAO D 7 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 HAO D 7 CA - C - N ANGL. DEV. = 20.1 DEGREES REMARK 500 HAO E 7 C - N - CA ANGL. DEV. = 20.2 DEGREES REMARK 500 HAO E 7 CA - C - N ANGL. DEV. = 28.2 DEGREES REMARK 500 HAO F 7 CA - C - N ANGL. DEV. = 25.3 DEGREES REMARK 500 HAO G 7 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 HAO G 7 CA - C - N ANGL. DEV. = 26.9 DEGREES REMARK 500 HAO H 7 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 HAO H 7 CA - C - N ANGL. DEV. = 28.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 F 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 E 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 F 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 C 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 23 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q9G RELATED DB: PDB REMARK 900 RELATED ID: 3Q9I RELATED DB: PDB REMARK 900 RELATED ID: 3Q9J RELATED DB: PDB DBREF 3Q9H A 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H B 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H C 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H D 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H E 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H F 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H G 1 10 PDB 3Q9H 3Q9H 1 10 DBREF 3Q9H H 1 10 PDB 3Q9H 3Q9H 1 10 SEQRES 1 A 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 B 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 C 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 D 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 E 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 F 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 G 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN SEQRES 1 H 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN MODRES 3Q9H ORN A 6 ALA L-ORNITHINE MODRES 3Q9H ORN A 10 ALA L-ORNITHINE MODRES 3Q9H ORN B 6 ALA L-ORNITHINE MODRES 3Q9H ORN B 10 ALA L-ORNITHINE MODRES 3Q9H ORN C 6 ALA L-ORNITHINE MODRES 3Q9H ORN C 10 ALA L-ORNITHINE MODRES 3Q9H ORN D 6 ALA L-ORNITHINE MODRES 3Q9H ORN D 10 ALA L-ORNITHINE MODRES 3Q9H ORN E 6 ALA L-ORNITHINE MODRES 3Q9H ORN E 10 ALA L-ORNITHINE MODRES 3Q9H ORN F 6 ALA L-ORNITHINE MODRES 3Q9H ORN F 10 ALA L-ORNITHINE MODRES 3Q9H ORN G 6 ALA L-ORNITHINE MODRES 3Q9H ORN G 10 ALA L-ORNITHINE MODRES 3Q9H ORN H 6 ALA L-ORNITHINE MODRES 3Q9H ORN H 10 ALA L-ORNITHINE HET ORN A 6 8 HET HAO A 7 17 HET ORN A 10 8 HET ORN B 6 8 HET HAO B 7 17 HET ORN B 10 8 HET ORN C 6 8 HET HAO C 7 17 HET ORN C 10 8 HET ORN D 6 8 HET HAO D 7 17 HET ORN D 10 8 HET ORN E 6 8 HET HAO E 7 17 HET ORN E 10 8 HET ORN F 6 8 HET HAO F 7 17 HET ORN F 10 8 HET ORN G 6 8 HET HAO G 7 17 HET ORN G 10 8 HET ORN H 6 8 HET HAO H 7 17 HET ORN H 10 8 HET SO4 A 11 5 HET GOL B 11 6 HET BU1 B 12 6 HET GOL B 23 6 HET BU1 C 18 6 HET GOL C 22 6 HET GOL D 11 6 HET SO4 E 11 5 HET SO4 E 12 5 HET BU1 E 16 6 HET BU1 F 13 6 HET BU1 F 17 6 HET SO4 G 11 5 HET BU1 G 12 6 HET BU1 G 14 6 HET BU1 G 19 6 HET SO4 H 11 5 HET SO4 H 12 5 HET BU1 H 13 6 HET BU1 H 15 6 HET BU1 H 20 6 HET GOL H 21 6 HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM BU1 1,4-BUTANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ORN 16(C5 H12 N2 O2) FORMUL 1 HAO 8(C10 H11 N3 O5) FORMUL 9 SO4 6(O4 S 2-) FORMUL 10 GOL 5(C3 H8 O3) FORMUL 11 BU1 11(C4 H10 O2) FORMUL 31 HOH *30(H2 O) SHEET 1 A 2 VAL A 2 PHE A 4 0 SHEET 2 A 2 VAL B 2 PHE B 4 -1 O PHE B 4 N VAL A 2 SHEET 1 B 2 VAL C 2 PHE C 4 0 SHEET 2 B 2 VAL D 2 PHE D 4 -1 O PHE D 4 N VAL C 2 SHEET 1 C 2 VAL E 2 PHE E 3 0 SHEET 2 C 2 PHE F 3 PHE F 4 1 O PHE F 4 N VAL E 2 SHEET 1 D 2 VAL G 2 PHE G 4 0 SHEET 2 D 2 LEU H 1 PHE H 3 1 O VAL H 2 N VAL G 2 LINK N LEU A 1 C ORN A 10 1555 1555 1.34 LINK C ALA A 5 NE ORN A 6 1555 1555 1.35 LINK C ORN A 6 N HAO A 7 1555 1555 1.32 LINK C HAO A 7 N LEU A 8 1555 1555 1.32 LINK C LYS A 9 NE ORN A 10 1555 1555 1.34 LINK N LEU B 1 C ORN B 10 1555 1555 1.29 LINK C ALA B 5 NE ORN B 6 1555 1555 1.34 LINK C ORN B 6 N HAO B 7 1555 1555 1.35 LINK C HAO B 7 N LEU B 8 1555 1555 1.30 LINK C LYS B 9 NE ORN B 10 1555 1555 1.34 LINK N LEU C 1 C ORN C 10 1555 1555 1.32 LINK C ALA C 5 NE ORN C 6 1555 1555 1.33 LINK C ORN C 6 N HAO C 7 1555 1555 1.32 LINK C HAO C 7 N LEU C 8 1555 1555 1.30 LINK C LYS C 9 NE ORN C 10 1555 1555 1.34 LINK N LEU D 1 C ORN D 10 1555 1555 1.30 LINK C ALA D 5 NE ORN D 6 1555 1555 1.34 LINK C ORN D 6 N HAO D 7 1555 1555 1.33 LINK C HAO D 7 N LEU D 8 1555 1555 1.30 LINK C LYS D 9 NE ORN D 10 1555 1555 1.35 LINK N LEU E 1 C ORN E 10 1555 1555 1.29 LINK C ALA E 5 NE ORN E 6 1555 1555 1.35 LINK C ORN E 6 N HAO E 7 1555 1555 1.30 LINK C HAO E 7 N LEU E 8 1555 1555 1.34 LINK C LYS E 9 NE ORN E 10 1555 1555 1.36 LINK N LEU F 1 C ORN F 10 1555 1555 1.32 LINK C ALA F 5 NE ORN F 6 1555 1555 1.34 LINK C ORN F 6 N HAO F 7 1555 1555 1.28 LINK C HAO F 7 N LEU F 8 1555 1555 1.29 LINK C LYS F 9 NE ORN F 10 1555 1555 1.34 LINK N LEU G 1 C ORN G 10 1555 1555 1.30 LINK C ALA G 5 NE ORN G 6 1555 1555 1.35 LINK C ORN G 6 N HAO G 7 1555 1555 1.31 LINK C HAO G 7 N LEU G 8 1555 1555 1.31 LINK C LYS G 9 NE ORN G 10 1555 1555 1.33 LINK N LEU H 1 C ORN H 10 1555 1555 1.31 LINK C ALA H 5 NE ORN H 6 1555 1555 1.36 LINK C ORN H 6 N HAO H 7 1555 1555 1.30 LINK C HAO H 7 N LEU H 8 1555 1555 1.30 LINK C LYS H 9 NE ORN H 10 1555 1555 1.35 SITE 1 AC1 3 ORN F 10 BU1 F 13 ORN H 10 SITE 1 AC2 3 ORN E 10 HOH E 27 ORN G 10 SITE 1 AC3 6 ORN C 6 HOH C 25 ORN E 6 HAO H 7 SITE 2 AC3 6 LEU H 8 HOH H 24 SITE 1 AC4 6 ORN A 6 ALA C 5 ORN C 6 ORN D 10 SITE 2 AC4 6 GOL D 11 HOH H 16 SITE 1 AC5 4 LYS E 9 ORN G 6 BU1 G 14 BU1 H 13 SITE 1 AC6 5 ORN A 6 HAO E 7 LEU E 8 ORN H 6 SITE 2 AC6 5 HOH H 16 SITE 1 AC7 4 ALA A 5 ORN A 6 ORN B 10 HOH B 14 SITE 1 AC8 4 SO4 A 11 ALA C 5 ORN C 6 ORN D 10 SITE 1 AC9 2 ORN B 10 HAO C 7 SITE 1 BC1 6 ORN G 6 SO4 G 11 PHE H 4 ALA H 5 SITE 2 BC1 6 ORN H 6 HOH H 23 SITE 1 BC2 2 VAL G 2 GOL H 21 SITE 1 BC3 3 ORN F 10 BU1 F 17 SO4 H 11 SITE 1 BC4 6 LYS E 9 PHE G 4 ORN G 6 LYS G 9 SITE 2 BC4 6 ORN G 10 SO4 G 11 SITE 1 BC5 2 HAO F 7 BU1 G 19 SITE 1 BC6 4 PHE E 4 ALA E 5 ORN E 6 ORN F 6 SITE 1 BC7 5 PHE F 4 ORN F 6 ORN F 10 BU1 F 13 SITE 2 BC7 5 LYS H 9 SITE 1 BC8 2 ORN C 6 HAO C 7 SITE 1 BC9 1 BU1 H 15 SITE 1 CC1 2 ORN F 6 LYS H 9 SITE 1 CC2 3 PHE G 4 BU1 G 12 VAL H 2 SITE 1 CC3 4 LYS A 9 LEU C 1 LYS C 9 ORN C 10 SITE 1 CC4 3 LYS B 9 LYS C 9 ORN C 10 CRYST1 57.860 57.860 129.738 90.00 90.00 90.00 P 43 21 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007708 0.00000