HEADER PROTEIN FIBRIL 07-JAN-11 3Q9H
TITLE LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED ON 42-MEMBERED
TITLE 2 MACROCYCLE SCAFFOLD
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE LVFFA(ORN)(HAO)LK(ORN);
COMPND 3 CHAIN: A, B, C, D, E, F, G, H;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: LVFFA SEGMENT FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED
COMPND 6 ON 42-MEMBERED MACROCYCLE SCAFFOLD
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS BETA SHEET TETRAMER, MACROCYCLIC PEPTIDE, BETA-SHEET MIMETIC, PROTEIN
KEYWDS 2 FIBRIL
EXPDTA X-RAY DIFFRACTION
AUTHOR C.LIU,M.R.SAWAYA,D.EISENBERG,J.S.NOWICK,P.CHENG,J.ZHENG
REVDAT 2 15-NOV-23 3Q9H 1 REMARK LINK ATOM
REVDAT 1 08-JUN-11 3Q9H 0
JRNL AUTH C.LIU,M.R.SAWAYA,P.N.CHENG,J.ZHENG,J.S.NOWICK,D.EISENBERG
JRNL TITL CHARACTERISTICS OF AMYLOID-RELATED OLIGOMERS REVEALED BY
JRNL TITL 2 CRYSTAL STRUCTURES OF MACROCYCLIC BETA-SHEET MIMICS.
JRNL REF J.AM.CHEM.SOC. V. 133 6736 2011
JRNL REFN ISSN 0002-7863
JRNL PMID 21473620
JRNL DOI 10.1021/JA200222N
REMARK 2
REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK,
REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.24
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 10974
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770
REMARK 3 FREE R VALUE TEST SET COUNT : 524
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 6
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2552
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1983
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2430
REMARK 3 BIN R VALUE (WORKING SET) : 0.1970
REMARK 3 BIN FREE R VALUE : 0.2250
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 736
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 126
REMARK 3 SOLVENT ATOMS : 30
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 59.90
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.50
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -4.93160
REMARK 3 B22 (A**2) : -4.93160
REMARK 3 B33 (A**2) : 9.86330
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.282
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 864 ; 2.000 ; NULL
REMARK 3 BOND ANGLES : 1121 ; 2.000 ; NULL
REMARK 3 TORSION ANGLES : 154 ; 2.000 ; NULL
REMARK 3 TRIGONAL CARBON PLANES : 32 ; 2.000 ; NULL
REMARK 3 GENERAL PLANES : 152 ; 5.000 ; NULL
REMARK 3 ISOTROPIC THERMAL FACTORS : 673 ; 20.000 ; NULL
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 56 ; 5.000 ; NULL
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 777 ; 4.000 ; NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.27
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.09
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.27
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|1 - A|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 1.3845 5.8640 15.1520
REMARK 3 T TENSOR
REMARK 3 T11: -0.1883 T22: -0.0414
REMARK 3 T33: -0.0387 T12: -0.0274
REMARK 3 T13: 0.1064 T23: -0.0209
REMARK 3 L TENSOR
REMARK 3 L11: 2.8002 L22: 0.0818
REMARK 3 L33: 1.2245 L12: 1.4216
REMARK 3 L13: 0.0835 L23: -1.5983
REMARK 3 S TENSOR
REMARK 3 S11: -0.1646 S12: 0.3408 S13: -0.6631
REMARK 3 S21: -0.1124 S22: 0.1929 S23: -0.1022
REMARK 3 S31: 0.2669 S32: -0.3190 S33: -0.0282
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|1 - B|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 2.9392 3.2969 24.1903
REMARK 3 T TENSOR
REMARK 3 T11: -0.1140 T22: 0.0117
REMARK 3 T33: 0.1158 T12: 0.0857
REMARK 3 T13: 0.1297 T23: 0.1416
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 2.0730
REMARK 3 L33: 3.4120 L12: -1.7311
REMARK 3 L13: 1.6921 L23: -1.3125
REMARK 3 S TENSOR
REMARK 3 S11: 0.1075 S12: -0.0459 S13: -0.7028
REMARK 3 S21: 0.1567 S22: -0.0452 S23: 0.2067
REMARK 3 S31: 0.1478 S32: 0.3194 S33: -0.0623
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|1 - C|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 11.5173 9.3303 17.9787
REMARK 3 T TENSOR
REMARK 3 T11: -0.2047 T22: -0.0078
REMARK 3 T33: -0.0637 T12: 0.0078
REMARK 3 T13: 0.0848 T23: 0.0099
REMARK 3 L TENSOR
REMARK 3 L11: 0.4453 L22: 1.5355
REMARK 3 L33: 1.5120 L12: -2.5467
REMARK 3 L13: 1.0439 L23: -0.1082
REMARK 3 S TENSOR
REMARK 3 S11: -0.2106 S12: -0.0936 S13: -0.5387
REMARK 3 S21: 0.0758 S22: 0.0069 S23: 0.2759
REMARK 3 S31: 0.0510 S32: 0.4074 S33: 0.2037
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|1 - D|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 7.6610 9.0103 9.2575
REMARK 3 T TENSOR
REMARK 3 T11: -0.1110 T22: 0.0420
REMARK 3 T33: -0.0065 T12: -0.0864
REMARK 3 T13: 0.1471 T23: -0.0710
REMARK 3 L TENSOR
REMARK 3 L11: 1.0818 L22: 1.9525
REMARK 3 L33: 1.7441 L12: -0.1654
REMARK 3 L13: 4.2378 L23: -0.8710
REMARK 3 S TENSOR
REMARK 3 S11: -0.1960 S12: 0.2034 S13: -0.5318
REMARK 3 S21: -0.1484 S22: 0.3490 S23: -0.1600
REMARK 3 S31: 0.0128 S32: -0.2415 S33: -0.1530
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: { E|1 - E|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): -5.6109 12.6205 20.8457
REMARK 3 T TENSOR
REMARK 3 T11: -0.0944 T22: 0.0744
REMARK 3 T33: -0.0469 T12: 0.0094
REMARK 3 T13: 0.0333 T23: -0.0061
REMARK 3 L TENSOR
REMARK 3 L11: 0.1860 L22: 1.2492
REMARK 3 L33: 2.1630 L12: -1.1902
REMARK 3 L13: -0.1140 L23: 0.8713
REMARK 3 S TENSOR
REMARK 3 S11: -0.1365 S12: 0.0187 S13: 0.1137
REMARK 3 S21: -0.0455 S22: 0.0732 S23: -0.0834
REMARK 3 S31: -0.0078 S32: 0.1939 S33: 0.0633
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: { F|1 - F|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): -2.3963 7.6775 28.7761
REMARK 3 T TENSOR
REMARK 3 T11: -0.1095 T22: 0.0151
REMARK 3 T33: -0.1080 T12: -0.0387
REMARK 3 T13: 0.0610 T23: 0.0402
REMARK 3 L TENSOR
REMARK 3 L11: 0.2888 L22: 3.3386
REMARK 3 L33: 1.9037 L12: -0.3285
REMARK 3 L13: 1.2918 L23: 1.0444
REMARK 3 S TENSOR
REMARK 3 S11: -0.0346 S12: -0.2023 S13: -0.2600
REMARK 3 S21: -0.0390 S22: -0.2096 S23: -0.2820
REMARK 3 S31: 0.0378 S32: -0.0757 S33: 0.2442
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: { G|1 - G|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 11.6101 14.7884 4.7470
REMARK 3 T TENSOR
REMARK 3 T11: -0.1276 T22: 0.0052
REMARK 3 T33: -0.1334 T12: 0.0231
REMARK 3 T13: 0.0305 T23: 0.0218
REMARK 3 L TENSOR
REMARK 3 L11: 1.8534 L22: 2.0312
REMARK 3 L33: 2.2976 L12: -1.7004
REMARK 3 L13: 0.4258 L23: -0.0485
REMARK 3 S TENSOR
REMARK 3 S11: -0.0814 S12: 0.2576 S13: 0.0397
REMARK 3 S21: 0.1210 S22: -0.0099 S23: -0.0452
REMARK 3 S31: -0.1121 S32: -0.1504 S33: 0.0913
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: { H|1 - H|9 }
REMARK 3 ORIGIN FOR THE GROUP (A): 17.0621 17.6102 12.6777
REMARK 3 T TENSOR
REMARK 3 T11: -0.0840 T22: 0.0624
REMARK 3 T33: -0.0429 T12: 0.0192
REMARK 3 T13: 0.0047 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 1.4472 L22: 1.4715
REMARK 3 L33: 4.5879 L12: 3.2657
REMARK 3 L13: 0.1073 L23: -0.9924
REMARK 3 S TENSOR
REMARK 3 S11: -0.0855 S12: -0.1982 S13: 0.1241
REMARK 3 S21: 0.2988 S22: 0.0278 S23: 0.0865
REMARK 3 S31: -0.1420 S32: -0.2240 S33: 0.0576
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3Q9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11.
REMARK 100 THE DEPOSITION ID IS D_1000063362.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-APR-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-C
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11013
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250
REMARK 200 RESOLUTION RANGE LOW (A) : 100.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 200 DATA REDUNDANCY : 3.300
REMARK 200 R MERGE (I) : 0.07300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6
REMARK 200 DATA REDUNDANCY IN SHELL : 3.40
REMARK 200 R MERGE FOR SHELL (I) : 0.47000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 76.41
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.21
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M MES PH 6.0,
REMARK 280 20% 1,4-BUTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.86900
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.93000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.93000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.30350
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.93000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.93000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.43450
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.93000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.93000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.30350
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.93000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.93000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.43450
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.86900
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 N LEU D 1 O ORN D 10 2.17
REMARK 500 N LEU B 1 O ORN B 10 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 HAO A 7 CA - C - N ANGL. DEV. = 25.7 DEGREES
REMARK 500 HAO B 7 CA - C - N ANGL. DEV. = 18.6 DEGREES
REMARK 500 HAO C 7 CA - C - N ANGL. DEV. = 25.4 DEGREES
REMARK 500 HAO D 7 C - N - CA ANGL. DEV. = 16.1 DEGREES
REMARK 500 HAO D 7 CA - C - N ANGL. DEV. = 20.1 DEGREES
REMARK 500 HAO E 7 C - N - CA ANGL. DEV. = 20.2 DEGREES
REMARK 500 HAO E 7 CA - C - N ANGL. DEV. = 28.2 DEGREES
REMARK 500 HAO F 7 CA - C - N ANGL. DEV. = 25.3 DEGREES
REMARK 500 HAO G 7 C - N - CA ANGL. DEV. = 16.0 DEGREES
REMARK 500 HAO G 7 CA - C - N ANGL. DEV. = 26.9 DEGREES
REMARK 500 HAO H 7 C - N - CA ANGL. DEV. = 17.8 DEGREES
REMARK 500 HAO H 7 CA - C - N ANGL. DEV. = 28.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 12
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 12
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 11
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 12
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 13
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 12
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 F 13
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 14
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 15
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 E 16
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 F 17
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 C 18
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 G 19
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 H 20
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 21
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 22
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 23
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3Q9G RELATED DB: PDB
REMARK 900 RELATED ID: 3Q9I RELATED DB: PDB
REMARK 900 RELATED ID: 3Q9J RELATED DB: PDB
DBREF 3Q9H A 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H B 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H C 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H D 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H E 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H F 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H G 1 10 PDB 3Q9H 3Q9H 1 10
DBREF 3Q9H H 1 10 PDB 3Q9H 3Q9H 1 10
SEQRES 1 A 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 B 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 C 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 D 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 E 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 F 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 G 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
SEQRES 1 H 10 LEU VAL PHE PHE ALA ORN HAO LEU LYS ORN
MODRES 3Q9H ORN A 6 ALA L-ORNITHINE
MODRES 3Q9H ORN A 10 ALA L-ORNITHINE
MODRES 3Q9H ORN B 6 ALA L-ORNITHINE
MODRES 3Q9H ORN B 10 ALA L-ORNITHINE
MODRES 3Q9H ORN C 6 ALA L-ORNITHINE
MODRES 3Q9H ORN C 10 ALA L-ORNITHINE
MODRES 3Q9H ORN D 6 ALA L-ORNITHINE
MODRES 3Q9H ORN D 10 ALA L-ORNITHINE
MODRES 3Q9H ORN E 6 ALA L-ORNITHINE
MODRES 3Q9H ORN E 10 ALA L-ORNITHINE
MODRES 3Q9H ORN F 6 ALA L-ORNITHINE
MODRES 3Q9H ORN F 10 ALA L-ORNITHINE
MODRES 3Q9H ORN G 6 ALA L-ORNITHINE
MODRES 3Q9H ORN G 10 ALA L-ORNITHINE
MODRES 3Q9H ORN H 6 ALA L-ORNITHINE
MODRES 3Q9H ORN H 10 ALA L-ORNITHINE
HET ORN A 6 8
HET HAO A 7 17
HET ORN A 10 8
HET ORN B 6 8
HET HAO B 7 17
HET ORN B 10 8
HET ORN C 6 8
HET HAO C 7 17
HET ORN C 10 8
HET ORN D 6 8
HET HAO D 7 17
HET ORN D 10 8
HET ORN E 6 8
HET HAO E 7 17
HET ORN E 10 8
HET ORN F 6 8
HET HAO F 7 17
HET ORN F 10 8
HET ORN G 6 8
HET HAO G 7 17
HET ORN G 10 8
HET ORN H 6 8
HET HAO H 7 17
HET ORN H 10 8
HET SO4 A 11 5
HET GOL B 11 6
HET BU1 B 12 6
HET GOL B 23 6
HET BU1 C 18 6
HET GOL C 22 6
HET GOL D 11 6
HET SO4 E 11 5
HET SO4 E 12 5
HET BU1 E 16 6
HET BU1 F 13 6
HET BU1 F 17 6
HET SO4 G 11 5
HET BU1 G 12 6
HET BU1 G 14 6
HET BU1 G 19 6
HET SO4 H 11 5
HET SO4 H 12 5
HET BU1 H 13 6
HET BU1 H 15 6
HET BU1 H 20 6
HET GOL H 21 6
HETNAM ORN L-ORNITHINE
HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)
HETNAM 2 HAO ACETIC ACID
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM BU1 1,4-BUTANEDIOL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 ORN 16(C5 H12 N2 O2)
FORMUL 1 HAO 8(C10 H11 N3 O5)
FORMUL 9 SO4 6(O4 S 2-)
FORMUL 10 GOL 5(C3 H8 O3)
FORMUL 11 BU1 11(C4 H10 O2)
FORMUL 31 HOH *30(H2 O)
SHEET 1 A 2 VAL A 2 PHE A 4 0
SHEET 2 A 2 VAL B 2 PHE B 4 -1 O PHE B 4 N VAL A 2
SHEET 1 B 2 VAL C 2 PHE C 4 0
SHEET 2 B 2 VAL D 2 PHE D 4 -1 O PHE D 4 N VAL C 2
SHEET 1 C 2 VAL E 2 PHE E 3 0
SHEET 2 C 2 PHE F 3 PHE F 4 1 O PHE F 4 N VAL E 2
SHEET 1 D 2 VAL G 2 PHE G 4 0
SHEET 2 D 2 LEU H 1 PHE H 3 1 O VAL H 2 N VAL G 2
LINK N LEU A 1 C ORN A 10 1555 1555 1.34
LINK C ALA A 5 NE ORN A 6 1555 1555 1.35
LINK C ORN A 6 N HAO A 7 1555 1555 1.32
LINK C HAO A 7 N LEU A 8 1555 1555 1.32
LINK C LYS A 9 NE ORN A 10 1555 1555 1.34
LINK N LEU B 1 C ORN B 10 1555 1555 1.29
LINK C ALA B 5 NE ORN B 6 1555 1555 1.34
LINK C ORN B 6 N HAO B 7 1555 1555 1.35
LINK C HAO B 7 N LEU B 8 1555 1555 1.30
LINK C LYS B 9 NE ORN B 10 1555 1555 1.34
LINK N LEU C 1 C ORN C 10 1555 1555 1.32
LINK C ALA C 5 NE ORN C 6 1555 1555 1.33
LINK C ORN C 6 N HAO C 7 1555 1555 1.32
LINK C HAO C 7 N LEU C 8 1555 1555 1.30
LINK C LYS C 9 NE ORN C 10 1555 1555 1.34
LINK N LEU D 1 C ORN D 10 1555 1555 1.30
LINK C ALA D 5 NE ORN D 6 1555 1555 1.34
LINK C ORN D 6 N HAO D 7 1555 1555 1.33
LINK C HAO D 7 N LEU D 8 1555 1555 1.30
LINK C LYS D 9 NE ORN D 10 1555 1555 1.35
LINK N LEU E 1 C ORN E 10 1555 1555 1.29
LINK C ALA E 5 NE ORN E 6 1555 1555 1.35
LINK C ORN E 6 N HAO E 7 1555 1555 1.30
LINK C HAO E 7 N LEU E 8 1555 1555 1.34
LINK C LYS E 9 NE ORN E 10 1555 1555 1.36
LINK N LEU F 1 C ORN F 10 1555 1555 1.32
LINK C ALA F 5 NE ORN F 6 1555 1555 1.34
LINK C ORN F 6 N HAO F 7 1555 1555 1.28
LINK C HAO F 7 N LEU F 8 1555 1555 1.29
LINK C LYS F 9 NE ORN F 10 1555 1555 1.34
LINK N LEU G 1 C ORN G 10 1555 1555 1.30
LINK C ALA G 5 NE ORN G 6 1555 1555 1.35
LINK C ORN G 6 N HAO G 7 1555 1555 1.31
LINK C HAO G 7 N LEU G 8 1555 1555 1.31
LINK C LYS G 9 NE ORN G 10 1555 1555 1.33
LINK N LEU H 1 C ORN H 10 1555 1555 1.31
LINK C ALA H 5 NE ORN H 6 1555 1555 1.36
LINK C ORN H 6 N HAO H 7 1555 1555 1.30
LINK C HAO H 7 N LEU H 8 1555 1555 1.30
LINK C LYS H 9 NE ORN H 10 1555 1555 1.35
SITE 1 AC1 3 ORN F 10 BU1 F 13 ORN H 10
SITE 1 AC2 3 ORN E 10 HOH E 27 ORN G 10
SITE 1 AC3 6 ORN C 6 HOH C 25 ORN E 6 HAO H 7
SITE 2 AC3 6 LEU H 8 HOH H 24
SITE 1 AC4 6 ORN A 6 ALA C 5 ORN C 6 ORN D 10
SITE 2 AC4 6 GOL D 11 HOH H 16
SITE 1 AC5 4 LYS E 9 ORN G 6 BU1 G 14 BU1 H 13
SITE 1 AC6 5 ORN A 6 HAO E 7 LEU E 8 ORN H 6
SITE 2 AC6 5 HOH H 16
SITE 1 AC7 4 ALA A 5 ORN A 6 ORN B 10 HOH B 14
SITE 1 AC8 4 SO4 A 11 ALA C 5 ORN C 6 ORN D 10
SITE 1 AC9 2 ORN B 10 HAO C 7
SITE 1 BC1 6 ORN G 6 SO4 G 11 PHE H 4 ALA H 5
SITE 2 BC1 6 ORN H 6 HOH H 23
SITE 1 BC2 2 VAL G 2 GOL H 21
SITE 1 BC3 3 ORN F 10 BU1 F 17 SO4 H 11
SITE 1 BC4 6 LYS E 9 PHE G 4 ORN G 6 LYS G 9
SITE 2 BC4 6 ORN G 10 SO4 G 11
SITE 1 BC5 2 HAO F 7 BU1 G 19
SITE 1 BC6 4 PHE E 4 ALA E 5 ORN E 6 ORN F 6
SITE 1 BC7 5 PHE F 4 ORN F 6 ORN F 10 BU1 F 13
SITE 2 BC7 5 LYS H 9
SITE 1 BC8 2 ORN C 6 HAO C 7
SITE 1 BC9 1 BU1 H 15
SITE 1 CC1 2 ORN F 6 LYS H 9
SITE 1 CC2 3 PHE G 4 BU1 G 12 VAL H 2
SITE 1 CC3 4 LYS A 9 LEU C 1 LYS C 9 ORN C 10
SITE 1 CC4 3 LYS B 9 LYS C 9 ORN C 10
CRYST1 57.860 57.860 129.738 90.00 90.00 90.00 P 43 21 2 64
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017283 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017283 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007708 0.00000