HEADER PROTEIN FIBRIL 07-JAN-11 3Q9J TITLE AIIFL SEGMENT DERIVED FROM ALZHEIMER'S AMYLOID-BETA DISPLAYED ON 42- TITLE 2 MEMBERED MACROCYCLE SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE AIIFL(ORN)(HAO)YK(ORN); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: AIIFL SEGMENT DERIVED FROM ALZHEIMER'S AMYLOID-BETA COMPND 7 DISPLAYED ON 42-MEMBERED MACROCYCLE SCAFFOLD SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS BETA SHEET TETRAMER, MACROCYCLIC PEPTIDE, BETA-SHEET MIMIC, AMYLOID- KEYWDS 2 LIKE OLIGOMER, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,M.R.SAWAYA,D.EISENBERG,J.S.NOWICK,P.CHENG,J.ZHENG REVDAT 2 15-NOV-23 3Q9J 1 REMARK LINK ATOM REVDAT 1 08-JUN-11 3Q9J 0 JRNL AUTH C.LIU,M.R.SAWAYA,P.N.CHENG,J.ZHENG,J.S.NOWICK,D.EISENBERG JRNL TITL CHARACTERISTICS OF AMYLOID-RELATED OLIGOMERS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF MACROCYCLIC BETA-SHEET MIMICS. JRNL REF J.AM.CHEM.SOC. V. 133 6736 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21473620 JRNL DOI 10.1021/JA200222N REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 3980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 398 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1134 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1980 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1021 REMARK 3 BIN R VALUE (WORKING SET) : 0.1889 REMARK 3 BIN FREE R VALUE : 0.2844 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 113 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.47620 REMARK 3 B22 (A**2) : -9.47620 REMARK 3 B33 (A**2) : 18.95230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.437 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 871 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 1175 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 190 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 40 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 200 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 623 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 80 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 947 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.4155 4.3118 15.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: -0.1724 REMARK 3 T33: -0.0506 T12: -0.3421 REMARK 3 T13: 0.1073 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 8.9649 L22: 4.5927 REMARK 3 L33: 1.6061 L12: 3.7864 REMARK 3 L13: 1.7221 L23: -2.9126 REMARK 3 S TENSOR REMARK 3 S11: 0.3426 S12: -0.7893 S13: -0.1144 REMARK 3 S21: 0.4704 S22: 0.1666 S23: -0.0673 REMARK 3 S31: -0.4943 S32: 0.6822 S33: -0.5092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.8700 5.1290 4.8661 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: -0.1416 REMARK 3 T33: 0.0251 T12: -0.2146 REMARK 3 T13: 0.1123 T23: -0.0900 REMARK 3 L TENSOR REMARK 3 L11: 2.3673 L22: 10.2100 REMARK 3 L33: 4.0423 L12: 4.8297 REMARK 3 L13: 3.9767 L23: -0.8727 REMARK 3 S TENSOR REMARK 3 S11: 0.3149 S12: 0.4254 S13: -0.0762 REMARK 3 S21: -1.0768 S22: 0.4486 S23: 0.0940 REMARK 3 S31: -0.6458 S32: 0.0190 S33: -0.7635 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.3176 11.2509 10.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: -0.1201 REMARK 3 T33: 0.0930 T12: -0.3643 REMARK 3 T13: 0.1495 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: -1.3337 L22: 1.6801 REMARK 3 L33: 1.0996 L12: 1.0170 REMARK 3 L13: -1.2402 L23: 2.8913 REMARK 3 S TENSOR REMARK 3 S11: -0.4208 S12: 0.7050 S13: -0.8849 REMARK 3 S21: 0.3281 S22: 0.4713 S23: -0.3056 REMARK 3 S31: -0.5121 S32: 0.6570 S33: -0.0504 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.5851 16.2562 9.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: -0.1068 REMARK 3 T33: 0.0569 T12: -0.3721 REMARK 3 T13: 0.0436 T23: -0.0973 REMARK 3 L TENSOR REMARK 3 L11: 1.2240 L22: 7.4271 REMARK 3 L33: 0.0000 L12: -0.6395 REMARK 3 L13: -1.9452 L23: -2.6813 REMARK 3 S TENSOR REMARK 3 S11: -0.3987 S12: 0.4165 S13: 0.0886 REMARK 3 S21: 0.3877 S22: 0.3449 S23: 0.6199 REMARK 3 S31: -0.5066 S32: 0.0625 S33: 0.0538 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): -12.2325 -11.3152 10.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: -0.1019 REMARK 3 T33: 0.0553 T12: -0.4459 REMARK 3 T13: -0.1332 T23: 0.0698 REMARK 3 L TENSOR REMARK 3 L11: 4.1205 L22: 6.6218 REMARK 3 L33: 0.0113 L12: -1.6028 REMARK 3 L13: 0.3283 L23: 4.7294 REMARK 3 S TENSOR REMARK 3 S11: -0.1635 S12: 0.3146 S13: 0.8111 REMARK 3 S21: 0.4500 S22: 0.2257 S23: 0.4845 REMARK 3 S31: 0.5376 S32: -0.7096 S33: -0.0621 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.6263 -16.3093 9.0453 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: -0.1247 REMARK 3 T33: 0.0459 T12: -0.3438 REMARK 3 T13: 0.0080 T23: 0.1353 REMARK 3 L TENSOR REMARK 3 L11: 0.4595 L22: 11.3501 REMARK 3 L33: 0.1922 L12: 0.7052 REMARK 3 L13: 3.2573 L23: 1.7033 REMARK 3 S TENSOR REMARK 3 S11: -0.5147 S12: 0.3408 S13: -0.1673 REMARK 3 S21: 0.4526 S22: 0.5270 S23: -0.6699 REMARK 3 S31: 0.7434 S32: 0.0979 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { G|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.3033 -4.3045 15.0298 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: -0.0798 REMARK 3 T33: -0.0104 T12: -0.3191 REMARK 3 T13: -0.1295 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 7.0062 L22: 6.7807 REMARK 3 L33: 6.9323 L12: 4.0025 REMARK 3 L13: 0.3736 L23: -0.2977 REMARK 3 S TENSOR REMARK 3 S11: 0.3509 S12: -0.6264 S13: -0.0274 REMARK 3 S21: 0.4488 S22: 0.0090 S23: -0.2318 REMARK 3 S31: 0.7434 S32: -0.4911 S33: -0.3598 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): -2.0254 -5.1108 4.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: -0.1381 REMARK 3 T33: -0.0224 T12: -0.2159 REMARK 3 T13: -0.1105 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 5.5760 L22: 12.3462 REMARK 3 L33: 3.7778 L12: 5.4878 REMARK 3 L13: 0.1004 L23: 0.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.1841 S12: 0.6923 S13: 0.0588 REMARK 3 S21: -0.9293 S22: 0.4325 S23: 0.2182 REMARK 3 S31: 0.5721 S32: -0.3330 S33: -0.6166 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9197, 0.9129 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.00015 M ZINC ACETATE, 0.1M MES PH REMARK 280 6.2, 12.5% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.02000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HAO A 7 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 HAO A 7 CA - C - N ANGL. DEV. = 31.7 DEGREES REMARK 500 HAO B 7 C - N - CA ANGL. DEV. = 19.1 DEGREES REMARK 500 HAO B 7 CA - C - N ANGL. DEV. = 31.7 DEGREES REMARK 500 HAO C 7 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 HAO C 7 CA - C - N ANGL. DEV. = 32.9 DEGREES REMARK 500 HAO D 7 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 HAO D 7 CA - C - N ANGL. DEV. = 32.6 DEGREES REMARK 500 HAO E 7 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 HAO E 7 CA - C - N ANGL. DEV. = 32.4 DEGREES REMARK 500 HAO F 7 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 HAO F 7 CA - C - N ANGL. DEV. = 32.8 DEGREES REMARK 500 HAO G 7 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 HAO G 7 CA - C - N ANGL. DEV. = 31.1 DEGREES REMARK 500 HAO H 7 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 HAO H 7 CA - C - N ANGL. DEV. = 31.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HAO B 7 -10.71 REMARK 500 HAO G 7 -10.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 18 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN A 6 N REMARK 620 2 ORN A 6 O 84.9 REMARK 620 3 ORN H 6 O 92.7 88.7 REMARK 620 4 ORN H 6 N 166.4 84.8 78.2 REMARK 620 5 HOH H 13 O 107.1 89.1 159.8 81.6 REMARK 620 6 HOH H 22 O 109.7 164.8 94.6 81.3 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 12 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN A 10 O REMARK 620 2 ORN A 10 N 74.5 REMARK 620 3 ORN D 10 O 91.1 79.6 REMARK 620 4 ORN D 10 N 86.0 153.2 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 14 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN B 6 O REMARK 620 2 ORN B 6 N 81.8 REMARK 620 3 HOH B 12 O 100.9 95.0 REMARK 620 4 ORN G 6 O 88.6 87.4 170.4 REMARK 620 5 ORN G 6 N 91.9 167.1 97.3 81.2 REMARK 620 6 HOH G 23 O 175.4 93.9 80.8 89.7 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 13 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN B 10 O REMARK 620 2 ORN B 10 N 74.1 REMARK 620 3 ORN C 10 O 84.4 82.9 REMARK 620 4 ORN C 10 N 82.0 145.8 70.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 15 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN E 6 N REMARK 620 2 ORN E 6 O 76.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 19 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN E 10 O REMARK 620 2 ORN E 10 N 79.4 REMARK 620 3 ORN H 10 O 85.8 84.8 REMARK 620 4 ORN H 10 N 75.8 147.4 72.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 16 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN F 6 N REMARK 620 2 ORN F 6 O 77.8 REMARK 620 3 HOH F 14 O 99.3 79.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 17 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ORN F 10 O REMARK 620 2 ORN F 10 N 73.9 REMARK 620 3 ORN G 10 O 85.6 80.5 REMARK 620 4 ORN G 10 N 83.3 147.4 74.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 19 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q9I RELATED DB: PDB REMARK 900 A DIFFERENT SEGMENT OF AMYLOID BETA (LVFFA) DISPLAYED ON A SIMILAR REMARK 900 MACROCYCLE FRAMEWORK REMARK 900 RELATED ID: 3Q9H RELATED DB: PDB REMARK 900 A DIFFERENT SEGMENT OF AMYLOID BETA (LVFFA) DISPLAYED ON A SIMILAR REMARK 900 MACROCYCLE FRAMEWORK REMARK 900 RELATED ID: 3Q9G RELATED DB: PDB REMARK 900 A SEGMENT OF TAU (VQIVY) DISPLAYED ON A SIMILAR MACROCYCLE FRAMEWORK DBREF 3Q9J A 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J B 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J C 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J D 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J E 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J F 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J G 1 10 PDB 3Q9J 3Q9J 1 10 DBREF 3Q9J H 1 10 PDB 3Q9J 3Q9J 1 10 SEQRES 1 A 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 B 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 C 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 D 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 E 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 F 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 G 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN SEQRES 1 H 10 ALA ILE ILE PHE LEU ORN HAO TYR LYS ORN MODRES 3Q9J ORN A 6 ALA L-ORNITHINE MODRES 3Q9J ORN A 10 ALA L-ORNITHINE MODRES 3Q9J ORN B 6 ALA L-ORNITHINE MODRES 3Q9J ORN B 10 ALA L-ORNITHINE MODRES 3Q9J ORN C 6 ALA L-ORNITHINE MODRES 3Q9J ORN C 10 ALA L-ORNITHINE MODRES 3Q9J ORN D 6 ALA L-ORNITHINE MODRES 3Q9J ORN D 10 ALA L-ORNITHINE MODRES 3Q9J ORN E 6 ALA L-ORNITHINE MODRES 3Q9J ORN E 10 ALA L-ORNITHINE MODRES 3Q9J ORN F 6 ALA L-ORNITHINE MODRES 3Q9J ORN F 10 ALA L-ORNITHINE MODRES 3Q9J ORN G 6 ALA L-ORNITHINE MODRES 3Q9J ORN G 10 ALA L-ORNITHINE MODRES 3Q9J ORN H 6 ALA L-ORNITHINE MODRES 3Q9J ORN H 10 ALA L-ORNITHINE HET ORN A 6 8 HET HAO A 7 17 HET ORN A 10 8 HET ORN B 6 8 HET HAO B 7 17 HET ORN B 10 8 HET ORN C 6 8 HET HAO C 7 17 HET ORN C 10 8 HET ORN D 6 8 HET HAO D 7 17 HET ORN D 10 8 HET ORN E 6 8 HET HAO E 7 17 HET ORN E 10 8 HET ORN F 6 8 HET HAO F 7 17 HET ORN F 10 8 HET ORN G 6 8 HET HAO G 7 17 HET ORN G 10 8 HET ORN H 6 8 HET HAO H 7 17 HET ORN H 10 8 HET ZN A 12 1 HET ZN A 18 1 HET GOL B 11 6 HET ZN B 13 1 HET ZN B 14 1 HET CL C 11 1 HET CL D 11 1 HET CL E 11 1 HET ZN E 15 1 HET ZN E 19 1 HET CL F 11 1 HET ZN F 16 1 HET ZN F 17 1 HET GOL G 11 6 HET GOL H 11 6 HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ORN 16(C5 H12 N2 O2) FORMUL 1 HAO 8(C10 H11 N3 O5) FORMUL 9 ZN 8(ZN 2+) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 14 CL 4(CL 1-) FORMUL 24 HOH *18(H2 O) LINK N ALA A 1 C ORN A 10 1555 1555 1.24 LINK C LEU A 5 NE ORN A 6 1555 1555 1.29 LINK C ORN A 6 N HAO A 7 1555 1555 1.34 LINK C HAO A 7 N TYR A 8 1555 1555 1.35 LINK C LYS A 9 NE ORN A 10 1555 1555 1.40 LINK N ALA B 1 C ORN B 10 1555 1555 1.22 LINK C LEU B 5 NE ORN B 6 1555 1555 1.31 LINK C ORN B 6 N HAO B 7 1555 1555 1.32 LINK C HAO B 7 N TYR B 8 1555 1555 1.34 LINK C LYS B 9 NE ORN B 10 1555 1555 1.40 LINK N ALA C 1 C ORN C 10 1555 1555 1.25 LINK C LEU C 5 NE ORN C 6 1555 1555 1.33 LINK C ORN C 6 N HAO C 7 1555 1555 1.33 LINK C HAO C 7 N TYR C 8 1555 1555 1.35 LINK C LYS C 9 NE ORN C 10 1555 1555 1.41 LINK N ALA D 1 C ORN D 10 1555 1555 1.23 LINK C LEU D 5 NE ORN D 6 1555 1555 1.34 LINK C ORN D 6 N HAO D 7 1555 1555 1.31 LINK C HAO D 7 N TYR D 8 1555 1555 1.35 LINK C LYS D 9 NE ORN D 10 1555 1555 1.42 LINK N ALA E 1 C ORN E 10 1555 1555 1.24 LINK C LEU E 5 NE ORN E 6 1555 1555 1.35 LINK C ORN E 6 N HAO E 7 1555 1555 1.32 LINK C HAO E 7 N TYR E 8 1555 1555 1.35 LINK C LYS E 9 NE ORN E 10 1555 1555 1.41 LINK N ALA F 1 C ORN F 10 1555 1555 1.24 LINK C LEU F 5 NE ORN F 6 1555 1555 1.34 LINK C ORN F 6 N HAO F 7 1555 1555 1.31 LINK C HAO F 7 N TYR F 8 1555 1555 1.35 LINK C LYS F 9 NE ORN F 10 1555 1555 1.41 LINK N ALA G 1 C ORN G 10 1555 1555 1.23 LINK C LEU G 5 NE ORN G 6 1555 1555 1.30 LINK C ORN G 6 N HAO G 7 1555 1555 1.34 LINK C HAO G 7 N TYR G 8 1555 1555 1.32 LINK C LYS G 9 NE ORN G 10 1555 1555 1.40 LINK N ALA H 1 C ORN H 10 1555 1555 1.23 LINK C LEU H 5 NE ORN H 6 1555 1555 1.30 LINK C ORN H 6 N HAO H 7 1555 1555 1.34 LINK C HAO H 7 N TYR H 8 1555 1555 1.34 LINK C LYS H 9 NE ORN H 10 1555 1555 1.41 LINK N ORN A 6 ZN ZN A 18 1555 1555 1.99 LINK O ORN A 6 ZN ZN A 18 1555 1555 2.03 LINK O ORN A 10 ZN ZN A 12 1555 1555 1.94 LINK N ORN A 10 ZN ZN A 12 1555 1555 2.49 LINK ZN ZN A 12 O ORN D 10 1555 1555 1.89 LINK ZN ZN A 12 N ORN D 10 1555 1555 2.26 LINK ZN ZN A 18 O ORN H 6 1555 1555 1.98 LINK ZN ZN A 18 N ORN H 6 1555 1555 2.27 LINK ZN ZN A 18 O HOH H 13 1555 1555 2.61 LINK ZN ZN A 18 O HOH H 22 1555 1555 2.11 LINK O ORN B 6 ZN ZN B 14 1555 1555 1.98 LINK N ORN B 6 ZN ZN B 14 1555 1555 2.19 LINK O ORN B 10 ZN ZN B 13 1555 1555 2.03 LINK N ORN B 10 ZN ZN B 13 1555 1555 2.43 LINK O HOH B 12 ZN ZN B 14 1555 1555 2.55 LINK ZN ZN B 13 O ORN C 10 1555 1555 1.97 LINK ZN ZN B 13 N ORN C 10 1555 1555 2.65 LINK ZN ZN B 14 O ORN G 6 1555 1555 2.05 LINK ZN ZN B 14 N ORN G 6 1555 1555 2.15 LINK ZN ZN B 14 O HOH G 23 1555 1555 2.55 LINK N ORN E 6 ZN ZN E 15 1555 1555 2.19 LINK O ORN E 6 ZN ZN E 15 1555 1555 2.22 LINK O ORN E 10 ZN ZN E 19 1555 1555 1.97 LINK N ORN E 10 ZN ZN E 19 1555 1555 2.31 LINK ZN ZN E 19 O ORN H 10 1555 1555 1.99 LINK ZN ZN E 19 N ORN H 10 1555 1555 2.50 LINK N ORN F 6 ZN ZN F 16 1555 1555 2.11 LINK O ORN F 6 ZN ZN F 16 1555 1555 2.23 LINK O ORN F 10 ZN ZN F 17 1555 1555 1.98 LINK N ORN F 10 ZN ZN F 17 1555 1555 2.53 LINK O HOH F 14 ZN ZN F 16 1555 1555 1.91 LINK ZN ZN F 17 O ORN G 10 1555 1555 2.01 LINK ZN ZN F 17 N ORN G 10 1555 1555 2.42 SITE 1 AC1 1 LYS E 9 SITE 1 AC2 1 LYS D 9 SITE 1 AC3 1 LYS C 9 SITE 1 AC4 1 LYS F 9 SITE 1 AC5 5 HAO G 7 LYS G 9 HOH G 12 HOH G 13 SITE 2 AC5 5 HOH G 14 SITE 1 AC6 2 HAO B 7 TYR B 8 SITE 1 AC7 3 LYS B 9 LYS D 9 HOH G 15 SITE 1 AC8 2 ORN A 10 ORN D 10 SITE 1 AC9 2 ORN B 10 ORN C 10 SITE 1 BC1 4 ORN B 6 HOH B 12 ORN G 6 HOH G 23 SITE 1 BC2 2 ORN C 6 ORN E 6 SITE 1 BC3 3 ORN D 6 ORN F 6 HOH F 14 SITE 1 BC4 2 ORN F 10 ORN G 10 SITE 1 BC5 4 ORN A 6 ORN H 6 HOH H 13 HOH H 22 SITE 1 BC6 2 ORN E 10 ORN H 10 CRYST1 41.780 41.780 63.060 90.00 90.00 120.00 P 31 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023935 0.013819 0.000000 0.00000 SCALE2 0.000000 0.027638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015858 0.00000