data_3QBA # _entry.id 3QBA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QBA pdb_00003qba 10.2210/pdb3qba/pdb NDB NA0908 ? ? RCSB RCSB063427 ? ? WWPDB D_1000063427 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-27 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.type' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QBA _pdbx_database_status.recvd_initial_deposition_date 2011-01-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1V9G . unspecified PDB 1WOE . unspecified PDB 1ICK . unspecified PDB 3QBB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fenn, T.D.' 1 'Schnieders, M.J.' 2 'Mustyakimov, M.' 3 'Wu, C.' 4 'Langan, P.' 5 'Pande, V.S.' 6 'Brunger, A.T.' 7 # _citation.id primary _citation.title ;Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration. ; _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 523 _citation.page_last 533 _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21481775 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.01.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fenn, T.D.' 1 ? primary 'Schnieders, M.J.' 2 ? primary 'Mustyakimov, M.' 3 ? primary 'Wu, C.' 4 ? primary 'Langan, P.' 5 ? primary 'Pande, V.S.' 6 ? primary 'Brunger, A.T.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Z-DNA 1730.225 2 ? ? ? ? 2 water nat water 18.015 41 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DCZ)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can XGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id DOD # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DCZ n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'solid state synthesis using a phosphoramidite approach' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCZ 'DNA OH 5 prime terminus' . "2'-DEOXYCYTIDINE" ? 'C9 H13 N3 O4' 227.217 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DCZ 1 1 1 DCZ DCZ A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DCZ 1 7 7 DCZ DCZ B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DC 3 9 9 DC DC B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 DC 5 11 11 DC DC B . n B 1 6 DG 6 12 12 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DOD 1 7 7 DOD DOD A . C 2 DOD 2 8 8 DOD DOD A . C 2 DOD 3 9 9 DOD DOD A . C 2 DOD 4 14 14 DOD DOD A . C 2 DOD 5 17 17 DOD DOD A . C 2 DOD 6 21 21 DOD DOD A . C 2 DOD 7 23 23 DOD DOD A . C 2 DOD 8 26 26 DOD DOD A . C 2 DOD 9 33 33 DOD DOD A . C 2 DOD 10 37 37 DOD DOD A . C 2 DOD 11 38 38 DOD DOD A . C 2 DOD 12 41 41 DOD DOD A . C 2 DOD 13 42 42 DOD DOD A . C 2 DOD 14 53 53 DOD DOD A . C 2 DOD 15 57 57 DOD DOD A . C 2 DOD 16 58 58 DOD DOD A . C 2 DOD 17 69 69 DOD DOD A . D 2 DOD 1 4 4 DOD DOD B . D 2 DOD 2 13 13 DOD DOD B . D 2 DOD 3 15 15 DOD DOD B . D 2 DOD 4 16 16 DOD DOD B . D 2 DOD 5 17 17 DOD DOD B . D 2 DOD 6 18 18 DOD DOD B . D 2 DOD 7 19 19 DOD DOD B . D 2 DOD 8 25 25 DOD DOD B . D 2 DOD 9 27 27 DOD DOD B . D 2 DOD 10 32 32 DOD DOD B . D 2 DOD 11 34 34 DOD DOD B . D 2 DOD 12 35 35 DOD DOD B . D 2 DOD 13 40 40 DOD DOD B . D 2 DOD 14 43 43 DOD DOD B . D 2 DOD 15 50 50 DOD DOD B . D 2 DOD 16 51 51 DOD DOD B . D 2 DOD 17 62 62 DOD DOD B . D 2 DOD 18 63 63 DOD DOD B . D 2 DOD 19 64 64 DOD DOD B . D 2 DOD 20 65 65 DOD DOD B . D 2 DOD 21 66 66 DOD DOD B . D 2 DOD 22 67 67 DOD DOD B . D 2 DOD 23 68 68 DOD DOD B . D 2 DOD 24 70 70 DOD DOD B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 nCNS-TINKER refinement . ? 3 d*TREK 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3QBA _cell.length_a 17.900 _cell.length_b 30.590 _cell.length_c 44.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QBA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _exptl.entry_id _exptl.method _exptl.crystals_number 3QBA 'X-RAY DIFFRACTION' 1 3QBA 'NEUTRON DIFFRACTION' ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_percent_sol 30.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;0.01M Magnesium Acetate 0.05M MES pH 5.6 2.5M Ammonium Sulfate, VAPOR DIFFUSION, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 293 ? 1 2 293 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RIGAKU SATURN 92' 2006-01-01 ? 2 'AREA DETECTOR' ? 2006-01-01 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.54 1.0 2 0.6 1.0 3 0.7 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' 'RIGAKU FR-E DW' ? ? ? 1.54 2 'NUCLEAR REACTOR' ? ? ? ? 0.6-0.7 # _reflns.entry_id 3QBA _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 100.0 _reflns.d_resolution_high 1.53 _reflns.number_obs 3696 _reflns.number_all 3696 _reflns.percent_possible_obs 92.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _refine.entry_id _refine.ls_number_reflns_obs _refine.ls_number_reflns_all _refine.pdbx_ls_sigma_I _refine.pdbx_ls_sigma_F _refine.pdbx_data_cutoff_high_absF _refine.pdbx_data_cutoff_low_absF _refine.pdbx_data_cutoff_high_rms_absF _refine.ls_d_res_low _refine.ls_d_res_high _refine.ls_percent_reflns_obs _refine.ls_R_factor_obs _refine.ls_R_factor_all _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free _refine.ls_R_factor_R_free_error _refine.ls_R_factor_R_free_error_details _refine.ls_percent_reflns_R_free _refine.ls_number_reflns_R_free _refine.ls_number_parameters _refine.ls_number_restraints _refine.occupancy_min _refine.occupancy_max _refine.correlation_coeff_Fo_to_Fc _refine.correlation_coeff_Fo_to_Fc_free _refine.B_iso_mean _refine.aniso_B[1][1] _refine.aniso_B[2][2] _refine.aniso_B[3][3] _refine.aniso_B[1][2] _refine.aniso_B[1][3] _refine.aniso_B[2][3] _refine.solvent_model_details _refine.solvent_model_param_ksol _refine.solvent_model_param_bsol _refine.pdbx_solvent_vdw_probe_radii _refine.pdbx_solvent_ion_probe_radii _refine.pdbx_solvent_shrinkage_radii _refine.pdbx_ls_cross_valid_method _refine.details _refine.pdbx_starting_model _refine.pdbx_method_to_determine_struct _refine.pdbx_isotropic_thermal_model _refine.pdbx_stereochemistry_target_values _refine.pdbx_stereochem_target_val_spec_case _refine.pdbx_R_Free_selection_details _refine.pdbx_overall_ESU_R_Free _refine.overall_SU_ML _refine.overall_SU_B _refine.overall_SU_R_Cruickshank_DPI _refine.ls_redundancy_reflns_obs _refine.B_iso_min _refine.B_iso_max _refine.overall_SU_R_free _refine.ls_wR_factor_R_free _refine.ls_wR_factor_R_work _refine.overall_FOM_free_R_set _refine.overall_FOM_work_R_set _refine.pdbx_overall_phase_error _refine.pdbx_refine_id _refine.pdbx_diffrn_id _refine.pdbx_overall_ESU_R _refine.pdbx_TLS_residual_ADP_flag _refine.pdbx_overall_SU_R_free_Cruickshank_DPI _refine.pdbx_overall_SU_R_Blow_DPI _refine.pdbx_overall_SU_R_free_Blow_DPI 3QBA 3696 3696 ? 0.0 ? ? ? 100 1.53 ? ? ? 0.1937 0.2359 ? ? ? 178 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'MOLECULAR REPLACEMENT' ? AMOEBA ? 'random, throughout' ? ? ? ? ? ? ? ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 ? ? ? ? ? 3QBA 4680 4680 ? 0.0 ? ? ? 100 1.4 ? ? ? 0.3007 0.3147 ? ? ? 240 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'MOLECULAR REPLACEMENT' ? AMOEBA ? 'random, throughout' ? ? ? ? ? ? ? ? ? ? ? ? ? 'NEUTRON DIFFRACTION' 2 ? ? ? ? ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 281 _refine_hist.d_res_high 1.53 _refine_hist.d_res_low 100 # _database_PDB_matrix.entry_id 3QBA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3QBA _struct.title 'Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Z-DNA (X-ray)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QBA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3QBA _struct_ref.pdbx_db_accession 3QBA _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGCGCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QBA A 1 ? 6 ? 3QBA 1 ? 6 ? 1 6 2 1 3QBA B 1 ? 6 ? 3QBA 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4290 ? 1 MORE -9 ? 1 'SSA (A^2)' 4310 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.327 1.367 -0.040 0.006 N 2 1 C5 A DG 6 ? ? N7 A DG 6 ? ? 1.350 1.388 -0.038 0.006 N 3 1 "C4'" B DC 9 ? B "C3'" B DC 9 ? B 1.590 1.529 0.061 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A DG 2 ? A P A DC 3 ? A "O5'" A DC 3 ? A 88.69 104.00 -15.31 1.90 Y 2 1 "O3'" A DG 2 ? A P A DC 3 ? A OP2 A DC 3 ? A 123.08 110.50 12.58 1.10 Y 3 1 "O4'" A DC 3 ? A "C1'" A DC 3 ? A N1 A DC 3 ? ? 110.23 108.30 1.93 0.30 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.59 108.30 2.29 0.30 N 5 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 108.84 111.90 -3.06 0.50 N 6 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 102.82 105.40 -2.58 0.40 N 7 1 "C1'" A DC 5 ? B "O4'" A DC 5 ? B "C4'" A DC 5 ? B 104.07 110.10 -6.03 1.00 N 8 1 "O4'" A DC 5 ? B "C1'" A DC 5 ? B N1 A DC 5 ? ? 103.76 108.00 -4.24 0.70 N 9 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 104.35 109.40 -5.05 0.80 N 10 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 109.97 106.80 3.17 0.50 N 11 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? B P B DC 9 ? B 131.46 119.70 11.76 1.20 Y 12 1 "O5'" B DC 9 ? B P B DC 9 ? B OP1 B DC 9 ? B 126.22 110.70 15.52 1.20 N 13 1 "O5'" B DC 9 ? B P B DC 9 ? B OP2 B DC 9 ? B 95.54 105.70 -10.16 0.90 N 14 1 "O4'" B DC 9 ? B "C1'" B DC 9 ? B "C2'" B DC 9 ? B 110.73 106.80 3.93 0.50 N 15 1 "O4'" B DC 9 ? A "C1'" B DC 9 ? A N1 B DC 9 ? ? 112.07 108.30 3.77 0.30 N 16 1 "O4'" B DC 9 ? B "C1'" B DC 9 ? B N1 B DC 9 ? ? 102.92 108.00 -5.08 0.70 N 17 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? "C3'" B DG 10 ? ? 110.05 106.00 4.05 0.60 N 18 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 125.62 121.90 3.72 0.40 N 19 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 101.04 104.30 -3.26 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DCZ N1 N N N 35 DCZ C2 C N N 36 DCZ N3 N N N 37 DCZ C4 C N N 38 DCZ C5 C N N 39 DCZ C6 C N N 40 DCZ O2 O N N 41 DCZ N4 N N N 42 DCZ "C1'" C N R 43 DCZ "C2'" C N N 44 DCZ "C3'" C N S 45 DCZ "C4'" C N R 46 DCZ "O4'" O N N 47 DCZ "O3'" O N N 48 DCZ "C5'" C N N 49 DCZ "O5'" O N N 50 DCZ H5 H N N 51 DCZ H6 H N N 52 DCZ HN41 H N N 53 DCZ HN42 H N N 54 DCZ "H1'" H N N 55 DCZ "H2'1" H N N 56 DCZ "H2'2" H N N 57 DCZ "H3'" H N N 58 DCZ "H4'" H N N 59 DCZ "HO3'" H N N 60 DCZ "H5'1" H N N 61 DCZ "H5'2" H N N 62 DCZ HO51 H N N 63 DG OP3 O N N 64 DG P P N N 65 DG OP1 O N N 66 DG OP2 O N N 67 DG "O5'" O N N 68 DG "C5'" C N N 69 DG "C4'" C N R 70 DG "O4'" O N N 71 DG "C3'" C N S 72 DG "O3'" O N N 73 DG "C2'" C N N 74 DG "C1'" C N R 75 DG N9 N Y N 76 DG C8 C Y N 77 DG N7 N Y N 78 DG C5 C Y N 79 DG C6 C N N 80 DG O6 O N N 81 DG N1 N N N 82 DG C2 C N N 83 DG N2 N N N 84 DG N3 N N N 85 DG C4 C Y N 86 DG HOP3 H N N 87 DG HOP2 H N N 88 DG "H5'" H N N 89 DG "H5''" H N N 90 DG "H4'" H N N 91 DG "H3'" H N N 92 DG "HO3'" H N N 93 DG "H2'" H N N 94 DG "H2''" H N N 95 DG "H1'" H N N 96 DG H8 H N N 97 DG H1 H N N 98 DG H21 H N N 99 DG H22 H N N 100 DOD O O N N 101 DOD D1 D N N 102 DOD D2 D N N 103 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DCZ N1 C2 sing N N 36 DCZ N1 C6 sing N N 37 DCZ N1 "C1'" sing N N 38 DCZ C2 N3 sing N N 39 DCZ C2 O2 doub N N 40 DCZ N3 C4 doub N N 41 DCZ C4 C5 sing N N 42 DCZ C4 N4 sing N N 43 DCZ C5 C6 doub N N 44 DCZ C5 H5 sing N N 45 DCZ C6 H6 sing N N 46 DCZ N4 HN41 sing N N 47 DCZ N4 HN42 sing N N 48 DCZ "C1'" "C2'" sing N N 49 DCZ "C1'" "O4'" sing N N 50 DCZ "C1'" "H1'" sing N N 51 DCZ "C2'" "C3'" sing N N 52 DCZ "C2'" "H2'1" sing N N 53 DCZ "C2'" "H2'2" sing N N 54 DCZ "C3'" "C4'" sing N N 55 DCZ "C3'" "O3'" sing N N 56 DCZ "C3'" "H3'" sing N N 57 DCZ "C4'" "O4'" sing N N 58 DCZ "C4'" "C5'" sing N N 59 DCZ "C4'" "H4'" sing N N 60 DCZ "O3'" "HO3'" sing N N 61 DCZ "C5'" "O5'" sing N N 62 DCZ "C5'" "H5'1" sing N N 63 DCZ "C5'" "H5'2" sing N N 64 DCZ "O5'" HO51 sing N N 65 DG OP3 P sing N N 66 DG OP3 HOP3 sing N N 67 DG P OP1 doub N N 68 DG P OP2 sing N N 69 DG P "O5'" sing N N 70 DG OP2 HOP2 sing N N 71 DG "O5'" "C5'" sing N N 72 DG "C5'" "C4'" sing N N 73 DG "C5'" "H5'" sing N N 74 DG "C5'" "H5''" sing N N 75 DG "C4'" "O4'" sing N N 76 DG "C4'" "C3'" sing N N 77 DG "C4'" "H4'" sing N N 78 DG "O4'" "C1'" sing N N 79 DG "C3'" "O3'" sing N N 80 DG "C3'" "C2'" sing N N 81 DG "C3'" "H3'" sing N N 82 DG "O3'" "HO3'" sing N N 83 DG "C2'" "C1'" sing N N 84 DG "C2'" "H2'" sing N N 85 DG "C2'" "H2''" sing N N 86 DG "C1'" N9 sing N N 87 DG "C1'" "H1'" sing N N 88 DG N9 C8 sing Y N 89 DG N9 C4 sing Y N 90 DG C8 N7 doub Y N 91 DG C8 H8 sing N N 92 DG N7 C5 sing Y N 93 DG C5 C6 sing N N 94 DG C5 C4 doub Y N 95 DG C6 O6 doub N N 96 DG C6 N1 sing N N 97 DG N1 C2 sing N N 98 DG N1 H1 sing N N 99 DG C2 N2 sing N N 100 DG C2 N3 doub N N 101 DG N2 H21 sing N N 102 DG N2 H22 sing N N 103 DG N3 C4 sing N N 104 DOD O D1 sing N N 105 DOD O D2 sing N N 106 # _ndb_struct_conf_na.entry_id 3QBA _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 0.258 -0.195 -0.023 -5.542 1.011 3.019 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.340 -0.207 0.171 -0.029 -7.725 0.840 2 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.260 -0.164 0.181 -5.129 0.425 1.257 3 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.190 -0.148 0.262 1.607 -1.832 0.384 4 A_DC5:DG8_B A 5 ? B 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.107 -1.110 3.371 -1.746 -4.929 -51.735 1.601 -0.241 3.255 5.632 -1.995 -51.980 1 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.129 5.366 3.734 0.150 -1.345 -6.382 -39.386 1.999 4.755 11.904 1.324 -6.523 2 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.103 -0.923 3.328 -0.405 -2.189 -53.019 1.175 -0.141 3.289 2.451 -0.453 -53.063 3 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? # _atom_sites.entry_id 3QBA _atom_sites.fract_transf_matrix[1][1] 0.055866 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032690 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022416 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C D H N O P # loop_