HEADER CYTOKINE/CYTOKINE RECEPTOR 13-JAN-11 3QBQ TITLE CRYSTAL STRUCTURE OF EXTRACELLULAR DOMAINS OF MOUSE RANK-RANKL COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 11; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 157-316; COMPND 5 SYNONYM: RANKL; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 11A; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: RESIDUES 32-201; COMPND 11 SYNONYM: RANK; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RANKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVFT3S; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RANK; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PVFT3S KEYWDS TUMOR NECROSIS FACTOR (TNF) LIGAND-RECEPTOR SUPERFAMILY FOLD, KEYWDS 2 CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.TA,G.T.T.NGUYEN,H.M.JIN,J.K.CHOI,H.PARK,N.S.KIM,H.Y.HWANG,K.K.KIM REVDAT 2 01-NOV-23 3QBQ 1 REMARK REVDAT 1 02-MAR-11 3QBQ 0 SPRSDE 02-MAR-11 3QBQ 3NZY JRNL AUTH H.M.TA,G.T.T.NGUYEN,H.M.JIN,J.K.CHOI,H.PARK,N.S.KIM, JRNL AUTH 2 H.Y.HWANG,K.K.KIM JRNL TITL STRUCTURE-BASED DEVELOPMENT OF A RECEPTOR ACTIVATOR OF JRNL TITL 2 NUCLEAR FACTOR-KAPPAB LIGAND (RANKL) INHIBITOR PEPTIDE AND JRNL TITL 3 MOLECULAR BASIS FOR OSTEOPETROSIS JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20281 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21059944 JRNL DOI 10.1073/PNAS.1011686107 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1976536.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8170 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 429 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.73000 REMARK 3 B22 (A**2) : 11.73000 REMARK 3 B33 (A**2) : -23.46000 REMARK 3 B12 (A**2) : 11.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 42.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 10.46 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1IQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRISODIUM CITRATE, 1.2M AMMONIUM REMARK 280 SULFATE, PH 5.6, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 120.86000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 60.43000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 104.66783 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.43000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 104.66783 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -60.43000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 104.66783 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 157 REMARK 465 LYS A 158 REMARK 465 PRO A 159 REMARK 465 GLU A 160 REMARK 465 ASP A 316 REMARK 465 THR B 32 REMARK 465 PRO B 33 REMARK 465 PRO B 34 REMARK 465 MET B 199 REMARK 465 THR B 200 REMARK 465 LEU B 201 REMARK 465 GLY C 157 REMARK 465 LYS C 158 REMARK 465 PRO C 159 REMARK 465 GLU C 160 REMARK 465 ASP C 316 REMARK 465 THR D 32 REMARK 465 PRO D 33 REMARK 465 PRO D 34 REMARK 465 MET D 199 REMARK 465 THR D 200 REMARK 465 LEU D 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 SER B 198 OG REMARK 470 GLN D 141 CG CD OE1 NE2 REMARK 470 SER D 198 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 225 NH2 ARG D 130 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 194 CE LYS C 194 NZ 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 249 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO C 249 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 189 31.86 -140.24 REMARK 500 SER A 201 -84.18 -96.61 REMARK 500 ASP A 210 152.12 -37.79 REMARK 500 ILE A 246 -0.32 -52.18 REMARK 500 LYS A 247 38.69 -155.94 REMARK 500 PRO A 249 -108.93 -2.63 REMARK 500 THR B 36 168.21 -39.77 REMARK 500 GLU B 38 18.41 -54.71 REMARK 500 ARG B 39 0.64 169.12 REMARK 500 HIS B 43 -111.50 -121.53 REMARK 500 ALA B 117 129.30 -39.50 REMARK 500 LEU B 157 122.76 -34.42 REMARK 500 THR B 188 -162.77 -126.23 REMARK 500 ASP C 210 151.52 -41.36 REMARK 500 ILE C 246 13.08 -51.63 REMARK 500 LYS C 247 -42.41 -138.43 REMARK 500 PRO C 249 -90.23 -19.31 REMARK 500 GLU D 38 19.53 -59.34 REMARK 500 ARG D 39 -10.79 173.92 REMARK 500 TYR D 41 -148.79 -145.53 REMARK 500 HIS D 43 -120.40 -114.73 REMARK 500 LEU D 44 75.19 -60.14 REMARK 500 ASN D 147 14.72 59.53 REMARK 500 LEU D 157 125.30 -36.39 REMARK 500 THR D 188 -166.38 -118.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QBQ A 157 316 UNP O35235 TNF11_MOUSE 157 316 DBREF 3QBQ B 32 201 UNP O35305 TNR11_MOUSE 32 201 DBREF 3QBQ C 157 316 UNP O35235 TNF11_MOUSE 157 316 DBREF 3QBQ D 32 201 UNP O35305 TNR11_MOUSE 32 201 SEQRES 1 A 160 GLY LYS PRO GLU ALA GLN PRO PHE ALA HIS LEU THR ILE SEQRES 2 A 160 ASN ALA ALA SER ILE PRO SER GLY SER HIS LYS VAL THR SEQRES 3 A 160 LEU SER SER TRP TYR HIS ASP ARG GLY TRP ALA LYS ILE SEQRES 4 A 160 SER ASN MET THR LEU SER ASN GLY LYS LEU ARG VAL ASN SEQRES 5 A 160 GLN ASP GLY PHE TYR TYR LEU TYR ALA ASN ILE CYS PHE SEQRES 6 A 160 ARG HIS HIS GLU THR SER GLY SER VAL PRO THR ASP TYR SEQRES 7 A 160 LEU GLN LEU MET VAL TYR VAL VAL LYS THR SER ILE LYS SEQRES 8 A 160 ILE PRO SER SER HIS ASN LEU MET LYS GLY GLY SER THR SEQRES 9 A 160 LYS ASN TRP SER GLY ASN SER GLU PHE HIS PHE TYR SER SEQRES 10 A 160 ILE ASN VAL GLY GLY PHE PHE LYS LEU ARG ALA GLY GLU SEQRES 11 A 160 GLU ILE SER ILE GLN VAL SER ASN PRO SER LEU LEU ASP SEQRES 12 A 160 PRO ASP GLN ASP ALA THR TYR PHE GLY ALA PHE LYS VAL SEQRES 13 A 160 GLN ASP ILE ASP SEQRES 1 B 170 THR PRO PRO CYS THR GLN GLU ARG HIS TYR GLU HIS LEU SEQRES 2 B 170 GLY ARG CYS CYS SER ARG CYS GLU PRO GLY LYS TYR LEU SEQRES 3 B 170 SER SER LYS CYS THR PRO THR SER ASP SER VAL CYS LEU SEQRES 4 B 170 PRO CYS GLY PRO ASP GLU TYR LEU ASP THR TRP ASN GLU SEQRES 5 B 170 GLU ASP LYS CYS LEU LEU HIS LYS VAL CYS ASP ALA GLY SEQRES 6 B 170 LYS ALA LEU VAL ALA VAL ASP PRO GLY ASN HIS THR ALA SEQRES 7 B 170 PRO ARG ARG CYS ALA CYS THR ALA GLY TYR HIS TRP ASN SEQRES 8 B 170 SER ASP CYS GLU CYS CYS ARG ARG ASN THR GLU CYS ALA SEQRES 9 B 170 PRO GLY PHE GLY ALA GLN HIS PRO LEU GLN LEU ASN LYS SEQRES 10 B 170 ASP THR VAL CYS THR PRO CYS LEU LEU GLY PHE PHE SER SEQRES 11 B 170 ASP VAL PHE SER SER THR ASP LYS CYS LYS PRO TRP THR SEQRES 12 B 170 ASN CYS THR LEU LEU GLY LYS LEU GLU ALA HIS GLN GLY SEQRES 13 B 170 THR THR GLU SER ASP VAL VAL CYS SER SER SER MET THR SEQRES 14 B 170 LEU SEQRES 1 C 160 GLY LYS PRO GLU ALA GLN PRO PHE ALA HIS LEU THR ILE SEQRES 2 C 160 ASN ALA ALA SER ILE PRO SER GLY SER HIS LYS VAL THR SEQRES 3 C 160 LEU SER SER TRP TYR HIS ASP ARG GLY TRP ALA LYS ILE SEQRES 4 C 160 SER ASN MET THR LEU SER ASN GLY LYS LEU ARG VAL ASN SEQRES 5 C 160 GLN ASP GLY PHE TYR TYR LEU TYR ALA ASN ILE CYS PHE SEQRES 6 C 160 ARG HIS HIS GLU THR SER GLY SER VAL PRO THR ASP TYR SEQRES 7 C 160 LEU GLN LEU MET VAL TYR VAL VAL LYS THR SER ILE LYS SEQRES 8 C 160 ILE PRO SER SER HIS ASN LEU MET LYS GLY GLY SER THR SEQRES 9 C 160 LYS ASN TRP SER GLY ASN SER GLU PHE HIS PHE TYR SER SEQRES 10 C 160 ILE ASN VAL GLY GLY PHE PHE LYS LEU ARG ALA GLY GLU SEQRES 11 C 160 GLU ILE SER ILE GLN VAL SER ASN PRO SER LEU LEU ASP SEQRES 12 C 160 PRO ASP GLN ASP ALA THR TYR PHE GLY ALA PHE LYS VAL SEQRES 13 C 160 GLN ASP ILE ASP SEQRES 1 D 170 THR PRO PRO CYS THR GLN GLU ARG HIS TYR GLU HIS LEU SEQRES 2 D 170 GLY ARG CYS CYS SER ARG CYS GLU PRO GLY LYS TYR LEU SEQRES 3 D 170 SER SER LYS CYS THR PRO THR SER ASP SER VAL CYS LEU SEQRES 4 D 170 PRO CYS GLY PRO ASP GLU TYR LEU ASP THR TRP ASN GLU SEQRES 5 D 170 GLU ASP LYS CYS LEU LEU HIS LYS VAL CYS ASP ALA GLY SEQRES 6 D 170 LYS ALA LEU VAL ALA VAL ASP PRO GLY ASN HIS THR ALA SEQRES 7 D 170 PRO ARG ARG CYS ALA CYS THR ALA GLY TYR HIS TRP ASN SEQRES 8 D 170 SER ASP CYS GLU CYS CYS ARG ARG ASN THR GLU CYS ALA SEQRES 9 D 170 PRO GLY PHE GLY ALA GLN HIS PRO LEU GLN LEU ASN LYS SEQRES 10 D 170 ASP THR VAL CYS THR PRO CYS LEU LEU GLY PHE PHE SER SEQRES 11 D 170 ASP VAL PHE SER SER THR ASP LYS CYS LYS PRO TRP THR SEQRES 12 D 170 ASN CYS THR LEU LEU GLY LYS LEU GLU ALA HIS GLN GLY SEQRES 13 D 170 THR THR GLU SER ASP VAL VAL CYS SER SER SER MET THR SEQRES 14 D 170 LEU FORMUL 5 HOH *182(H2 O) HELIX 1 1 THR A 226 GLY A 228 5 3 HELIX 2 2 ASN A 294 LEU A 298 5 5 HELIX 3 3 ASP B 94 LYS B 97 5 4 HELIX 4 4 ASN B 175 GLY B 180 5 6 HELIX 5 5 ALA C 171 ILE C 174 5 4 HELIX 6 6 THR C 226 GLY C 228 5 3 HELIX 7 7 ASN C 294 LEU C 298 5 5 HELIX 8 8 ASP D 94 LYS D 97 5 4 HELIX 9 9 ASN D 175 GLY D 180 5 6 SHEET 1 A 3 TRP A 186 TYR A 187 0 SHEET 2 A 3 PHE A 164 ILE A 169 -1 N THR A 168 O TYR A 187 SHEET 3 A 3 LYS A 194 SER A 196 -1 O LYS A 194 N HIS A 166 SHEET 1 B 5 TRP A 186 TYR A 187 0 SHEET 2 B 5 PHE A 164 ILE A 169 -1 N THR A 168 O TYR A 187 SHEET 3 B 5 TYR A 306 GLN A 313 -1 O PHE A 307 N LEU A 167 SHEET 4 B 5 GLY A 211 HIS A 224 -1 N PHE A 212 O GLN A 313 SHEET 5 B 5 PHE A 269 LEU A 282 -1 O TYR A 272 N PHE A 221 SHEET 1 C 4 VAL A 181 THR A 182 0 SHEET 2 C 4 GLU A 286 VAL A 292 -1 O VAL A 292 N VAL A 181 SHEET 3 C 4 LEU A 205 VAL A 207 -1 N VAL A 207 O GLU A 286 SHEET 4 C 4 MET A 198 LEU A 200 -1 N THR A 199 O ARG A 206 SHEET 1 D 4 VAL A 181 THR A 182 0 SHEET 2 D 4 GLU A 286 VAL A 292 -1 O VAL A 292 N VAL A 181 SHEET 3 D 4 GLN A 236 SER A 245 -1 N THR A 244 O GLU A 287 SHEET 4 D 4 ILE A 248 THR A 260 -1 O LEU A 254 N VAL A 241 SHEET 1 E 2 HIS B 40 GLU B 42 0 SHEET 2 E 2 CYS B 47 SER B 49 -1 O CYS B 48 N TYR B 41 SHEET 1 F 2 LYS B 55 SER B 59 0 SHEET 2 F 2 VAL B 68 PRO B 71 -1 O VAL B 68 N SER B 58 SHEET 1 G 2 GLU B 76 TYR B 77 0 SHEET 2 G 2 LEU B 88 LEU B 89 -1 O LEU B 88 N TYR B 77 SHEET 1 H 2 LEU B 99 ASP B 103 0 SHEET 2 H 2 ARG B 112 CYS B 115 -1 O ALA B 114 N VAL B 100 SHEET 1 I 2 TYR B 119 ASN B 122 0 SHEET 2 I 2 CYS B 127 ARG B 130 -1 O CYS B 127 N ASN B 122 SHEET 1 J 2 PHE B 138 ALA B 140 0 SHEET 2 J 2 CYS B 152 PRO B 154 -1 O THR B 153 N GLY B 139 SHEET 1 K 2 PHE B 159 PHE B 160 0 SHEET 2 K 2 LYS B 171 PRO B 172 -1 O LYS B 171 N PHE B 160 SHEET 1 L 2 LEU B 182 HIS B 185 0 SHEET 2 L 2 VAL B 194 SER B 196 -1 O SER B 196 N LEU B 182 SHEET 1 M 3 TRP C 186 TYR C 187 0 SHEET 2 M 3 PHE C 164 ILE C 169 -1 N THR C 168 O TYR C 187 SHEET 3 M 3 LYS C 194 SER C 196 -1 O LYS C 194 N HIS C 166 SHEET 1 N 5 TRP C 186 TYR C 187 0 SHEET 2 N 5 PHE C 164 ILE C 169 -1 N THR C 168 O TYR C 187 SHEET 3 N 5 TYR C 306 GLN C 313 -1 O PHE C 307 N LEU C 167 SHEET 4 N 5 GLY C 211 HIS C 224 -1 N ASN C 218 O TYR C 306 SHEET 5 N 5 PHE C 269 LEU C 282 -1 O TYR C 272 N PHE C 221 SHEET 1 O 4 VAL C 181 THR C 182 0 SHEET 2 O 4 GLU C 286 VAL C 292 -1 O VAL C 292 N VAL C 181 SHEET 3 O 4 LYS C 204 VAL C 207 -1 N VAL C 207 O GLU C 286 SHEET 4 O 4 MET C 198 SER C 201 -1 N THR C 199 O ARG C 206 SHEET 1 P 4 VAL C 181 THR C 182 0 SHEET 2 P 4 GLU C 286 VAL C 292 -1 O VAL C 292 N VAL C 181 SHEET 3 P 4 GLN C 236 SER C 245 -1 N VAL C 242 O SER C 289 SHEET 4 P 4 HIS C 252 THR C 260 -1 O LEU C 254 N VAL C 241 SHEET 1 Q 2 LYS D 55 SER D 59 0 SHEET 2 Q 2 VAL D 68 PRO D 71 -1 O VAL D 68 N SER D 58 SHEET 1 R 2 GLU D 76 TYR D 77 0 SHEET 2 R 2 LEU D 88 LEU D 89 -1 O LEU D 88 N TYR D 77 SHEET 1 S 2 LEU D 99 ASP D 103 0 SHEET 2 S 2 ARG D 112 CYS D 115 -1 O ALA D 114 N VAL D 100 SHEET 1 T 2 TYR D 119 ASN D 122 0 SHEET 2 T 2 CYS D 127 ARG D 130 -1 O CYS D 127 N ASN D 122 SHEET 1 U 2 PHE D 138 ALA D 140 0 SHEET 2 U 2 CYS D 152 PRO D 154 -1 O THR D 153 N GLY D 139 SHEET 1 V 2 PHE D 159 PHE D 160 0 SHEET 2 V 2 LYS D 171 PRO D 172 -1 O LYS D 171 N PHE D 160 SHEET 1 W 2 LEU D 182 HIS D 185 0 SHEET 2 W 2 VAL D 194 SER D 196 -1 O VAL D 194 N HIS D 185 SSBOND 1 CYS B 35 CYS B 47 1555 1555 2.04 SSBOND 2 CYS B 48 CYS B 61 1555 1555 2.02 SSBOND 3 CYS B 51 CYS B 69 1555 1555 2.03 SSBOND 4 CYS B 72 CYS B 87 1555 1555 2.05 SSBOND 5 CYS B 93 CYS B 113 1555 1555 2.05 SSBOND 6 CYS B 115 CYS B 128 1555 1555 2.02 SSBOND 7 CYS B 125 CYS B 127 1555 1555 2.06 SSBOND 8 CYS B 134 CYS B 152 1555 1555 2.05 SSBOND 9 CYS B 155 CYS B 170 1555 1555 2.04 SSBOND 10 CYS B 176 CYS B 195 1555 1555 2.04 SSBOND 11 CYS D 35 CYS D 47 1555 1555 2.04 SSBOND 12 CYS D 48 CYS D 61 1555 1555 2.02 SSBOND 13 CYS D 51 CYS D 69 1555 1555 2.04 SSBOND 14 CYS D 72 CYS D 87 1555 1555 2.04 SSBOND 15 CYS D 93 CYS D 113 1555 1555 2.04 SSBOND 16 CYS D 115 CYS D 128 1555 1555 2.03 SSBOND 17 CYS D 125 CYS D 127 1555 1555 2.06 SSBOND 18 CYS D 134 CYS D 152 1555 1555 2.05 SSBOND 19 CYS D 155 CYS D 170 1555 1555 2.04 SSBOND 20 CYS D 176 CYS D 195 1555 1555 2.05 CISPEP 1 HIS B 142 PRO B 143 0 -0.33 CISPEP 2 HIS D 142 PRO D 143 0 0.00 CRYST1 120.860 120.860 93.425 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008274 0.004777 0.000000 0.00000 SCALE2 0.000000 0.009554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010704 0.00000