data_3QBZ # _entry.id 3QBZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QBZ RCSB RCSB063452 WWPDB D_1000063452 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OQ0 'Structure of 6xHis Dbf4 fragment encompassing residues 120-250' unspecified PDB 3OQ4 'Structure of Dbf4 fragment encompassing residues 120-250 (his-tag removed)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QBZ _pdbx_database_status.recvd_initial_deposition_date 2011-01-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matthews, L.A.' 1 'Jones, D.R.' 2 'Prasad, A.A.' 3 'Duncker, B.P.' 4 'Guarne, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Saccharomyces cerevisiae Dbf4 has unique fold necessary for interaction with Rad53 kinase.' J.Biol.Chem. 287 2378 2387 2012 JBCHA3 US 0021-9258 0071 ? 22130670 10.1074/jbc.M111.233973 1 'Crystallization and preliminary X-ray diffraction analysis of motif N from Saccharomyces cerevisiae Dbf4' 'Acta Crystallogr.,Sect.F' F65 890 894 2009 ? DK 1744-3091 ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Matthews, L.A.' 1 primary 'Jones, D.R.' 2 primary 'Prasad, A.A.' 3 primary 'Duncker, B.P.' 4 primary 'Guarne, A.' 5 1 'Matthews, L.A.' 6 1 'Duong, A.' 7 1 'Prasad, A.A.' 8 1 'Duncker, B.P.' 9 1 'Guarne, A.' 10 # _cell.entry_id 3QBZ _cell.length_a 83.740 _cell.length_b 83.740 _cell.length_c 103.669 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QBZ _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DDK kinase regulatory subunit DBF4' 18993.949 1 ? ? 'residues 66-221, HBRCT domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dumbbell forming protein 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMQQQQHLHEKKRARIERARSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNK SKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKNLDVDLDHL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMQQQQHLHEKKRARIERARSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNK SKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKNLDVDLDHL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLN n 1 6 GLN n 1 7 GLN n 1 8 GLN n 1 9 HIS n 1 10 LEU n 1 11 HIS n 1 12 GLU n 1 13 LYS n 1 14 LYS n 1 15 ARG n 1 16 ALA n 1 17 ARG n 1 18 ILE n 1 19 GLU n 1 20 ARG n 1 21 ALA n 1 22 ARG n 1 23 SER n 1 24 ILE n 1 25 GLU n 1 26 GLY n 1 27 ALA n 1 28 VAL n 1 29 GLN n 1 30 VAL n 1 31 SER n 1 32 LYS n 1 33 GLY n 1 34 THR n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ASN n 1 39 VAL n 1 40 GLU n 1 41 PRO n 1 42 ARG n 1 43 VAL n 1 44 THR n 1 45 PRO n 1 46 LYS n 1 47 GLU n 1 48 LEU n 1 49 LEU n 1 50 GLU n 1 51 TRP n 1 52 GLN n 1 53 THR n 1 54 ASN n 1 55 TRP n 1 56 LYS n 1 57 LYS n 1 58 ILE n 1 59 MET n 1 60 LYS n 1 61 ARG n 1 62 ASP n 1 63 SER n 1 64 ARG n 1 65 ILE n 1 66 TYR n 1 67 PHE n 1 68 ASP n 1 69 ILE n 1 70 THR n 1 71 ASP n 1 72 ASP n 1 73 VAL n 1 74 GLU n 1 75 MET n 1 76 ASN n 1 77 THR n 1 78 TYR n 1 79 ASN n 1 80 LYS n 1 81 SER n 1 82 LYS n 1 83 MET n 1 84 ASP n 1 85 LYS n 1 86 ARG n 1 87 ARG n 1 88 ASP n 1 89 LEU n 1 90 LEU n 1 91 LYS n 1 92 ARG n 1 93 GLY n 1 94 PHE n 1 95 LEU n 1 96 THR n 1 97 LEU n 1 98 GLY n 1 99 ALA n 1 100 GLN n 1 101 ILE n 1 102 THR n 1 103 GLN n 1 104 PHE n 1 105 PHE n 1 106 ASP n 1 107 THR n 1 108 THR n 1 109 VAL n 1 110 THR n 1 111 ILE n 1 112 VAL n 1 113 ILE n 1 114 THR n 1 115 ARG n 1 116 ARG n 1 117 SER n 1 118 VAL n 1 119 GLU n 1 120 ASN n 1 121 ILE n 1 122 TYR n 1 123 LEU n 1 124 LEU n 1 125 LYS n 1 126 ASP n 1 127 THR n 1 128 ASP n 1 129 ILE n 1 130 LEU n 1 131 SER n 1 132 ARG n 1 133 ALA n 1 134 LYS n 1 135 LYS n 1 136 ASN n 1 137 TYR n 1 138 MET n 1 139 LYS n 1 140 VAL n 1 141 TRP n 1 142 SER n 1 143 TYR n 1 144 GLU n 1 145 LYS n 1 146 ALA n 1 147 ALA n 1 148 ARG n 1 149 PHE n 1 150 LEU n 1 151 LYS n 1 152 ASN n 1 153 LEU n 1 154 ASP n 1 155 VAL n 1 156 ASP n 1 157 LEU n 1 158 ASP n 1 159 HIS n 1 160 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;brewer's yeast,lager beer yeast,yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'D4205, DBF4, DNA52, YD9609.07C, YDR052C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'Dbf4 residues 66-221 subcloned in pET15b using NdeI-BamHI' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3 STAR pRAREpLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DBF4_YEAST _struct_ref.pdbx_db_accession P32325 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QQQQHLHEKKRARIERARSIEGAVQVSKGTGLKNVEPRVTPKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMD KRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKNLDVDLDHL ; _struct_ref.pdbx_align_begin 66 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QBZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 160 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32325 _struct_ref_seq.db_align_beg 66 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 221 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 66 _struct_ref_seq.pdbx_auth_seq_align_end 221 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QBZ GLY A 1 ? UNP P32325 ? ? 'EXPRESSION TAG' 62 1 1 3QBZ SER A 2 ? UNP P32325 ? ? 'EXPRESSION TAG' 63 2 1 3QBZ HIS A 3 ? UNP P32325 ? ? 'EXPRESSION TAG' 64 3 1 3QBZ MET A 4 ? UNP P32325 ? ? 'EXPRESSION TAG' 65 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QBZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;1.9 M ammonium sulfate 50 mM sodium cacodylate 15 mM CYMAL-7, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-11-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3QBZ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.69 _reflns.number_obs 6371 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 31 _reflns.B_iso_Wilson_estimate 53.46 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.69 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.419 _reflns_shell.pdbx_Rsym_value 0.344 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 298 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QBZ _refine.ls_number_reflns_obs 6361 _refine.ls_number_reflns_all 6373 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.823 _refine.ls_d_res_high 2.692 _refine.ls_percent_reflns_obs 99.81 _refine.ls_R_factor_obs 0.2264 _refine.ls_R_factor_all 0.2264 _refine.ls_R_factor_R_work 0.2238 _refine.ls_R_factor_R_free 0.2729 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.72 _refine.ls_number_reflns_R_free 300 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 7.7673 _refine.aniso_B[2][2] 7.7673 _refine.aniso_B[3][3] -15.5345 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.315 _refine.solvent_model_param_bsol 42.732 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 3OQ4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.43 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1038 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1063 _refine_hist.d_res_high 2.692 _refine_hist.d_res_low 38.823 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1074 'X-RAY DIFFRACTION' ? f_angle_d 1.034 ? ? 1449 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.070 ? ? 412 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 161 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 178 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.6923 3.3918 2928 0.2575 100.00 0.3418 . . 152 . . 3080 . 'X-RAY DIFFRACTION' . 3.3918 38.8272 3133 0.2121 100.00 0.2472 . . 148 . . 3281 . 'X-RAY DIFFRACTION' # _struct.entry_id 3QBZ _struct.title 'Crystal structure of the Rad53-recognition domain of Saccharomyces cerevisiae Dbf4' _struct.pdbx_descriptor 'DDK kinase regulatory subunit DBF4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QBZ _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'FHA domain, Rad53, replication checkpoint, CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 44 ? SER A 63 ? THR A 105 SER A 124 1 ? 20 HELX_P HELX_P2 2 ASN A 76 ? THR A 96 ? ASN A 137 THR A 157 1 ? 21 HELX_P HELX_P3 3 ASN A 120 ? LEU A 124 ? ASN A 181 LEU A 185 5 ? 5 HELX_P HELX_P4 4 ASP A 128 ? ASN A 136 ? ASP A 189 ASN A 197 1 ? 9 HELX_P HELX_P5 5 TYR A 143 ? ASN A 152 ? TYR A 204 ASN A 213 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 100 ? ILE A 101 ? GLN A 161 ILE A 162 A 2 ARG A 64 ? PHE A 67 ? ARG A 125 PHE A 128 A 3 ILE A 111 ? THR A 114 ? ILE A 172 THR A 175 A 4 LYS A 139 ? SER A 142 ? LYS A 200 SER A 203 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 100 ? O GLN A 161 N ILE A 65 ? N ILE A 126 A 2 3 N TYR A 66 ? N TYR A 127 O ILE A 113 ? O ILE A 174 A 3 4 N VAL A 112 ? N VAL A 173 O TRP A 141 ? O TRP A 202 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 107 ? THR A 168 . ? 1_555 ? 2 AC1 6 LYS A 125 ? LYS A 186 . ? 10_445 ? 3 AC1 6 THR A 127 ? THR A 188 . ? 10_445 ? 4 AC1 6 ARG A 132 ? ARG A 193 . ? 1_555 ? 5 AC1 6 LYS A 135 ? LYS A 196 . ? 1_555 ? 6 AC1 6 ASN A 136 ? ASN A 197 . ? 1_555 ? 7 AC2 5 ARG A 42 ? ARG A 103 . ? 4_455 ? 8 AC2 5 ASN A 76 ? ASN A 137 . ? 11_455 ? 9 AC2 5 THR A 77 ? THR A 138 . ? 11_455 ? 10 AC2 5 LYS A 125 ? LYS A 186 . ? 1_555 ? 11 AC2 5 LYS A 135 ? LYS A 196 . ? 10_445 ? 12 AC3 5 ASN A 38 ? ASN A 99 . ? 1_555 ? 13 AC3 5 VAL A 39 ? VAL A 100 . ? 1_555 ? 14 AC3 5 LYS A 134 ? LYS A 195 . ? 7_565 ? 15 AC3 5 LYS A 139 ? LYS A 200 . ? 10_555 ? 16 AC3 5 LYS A 145 ? LYS A 206 . ? 10_555 ? # _database_PDB_matrix.entry_id 3QBZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QBZ _atom_sites.fract_transf_matrix[1][1] 0.011942 _atom_sites.fract_transf_matrix[1][2] 0.006895 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013789 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009646 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 62 ? ? ? A . n A 1 2 SER 2 63 ? ? ? A . n A 1 3 HIS 3 64 ? ? ? A . n A 1 4 MET 4 65 ? ? ? A . n A 1 5 GLN 5 66 ? ? ? A . n A 1 6 GLN 6 67 ? ? ? A . n A 1 7 GLN 7 68 ? ? ? A . n A 1 8 GLN 8 69 ? ? ? A . n A 1 9 HIS 9 70 ? ? ? A . n A 1 10 LEU 10 71 ? ? ? A . n A 1 11 HIS 11 72 ? ? ? A . n A 1 12 GLU 12 73 ? ? ? A . n A 1 13 LYS 13 74 ? ? ? A . n A 1 14 LYS 14 75 ? ? ? A . n A 1 15 ARG 15 76 ? ? ? A . n A 1 16 ALA 16 77 ? ? ? A . n A 1 17 ARG 17 78 ? ? ? A . n A 1 18 ILE 18 79 ? ? ? A . n A 1 19 GLU 19 80 ? ? ? A . n A 1 20 ARG 20 81 ? ? ? A . n A 1 21 ALA 21 82 ? ? ? A . n A 1 22 ARG 22 83 ? ? ? A . n A 1 23 SER 23 84 ? ? ? A . n A 1 24 ILE 24 85 ? ? ? A . n A 1 25 GLU 25 86 ? ? ? A . n A 1 26 GLY 26 87 ? ? ? A . n A 1 27 ALA 27 88 ? ? ? A . n A 1 28 VAL 28 89 ? ? ? A . n A 1 29 GLN 29 90 ? ? ? A . n A 1 30 VAL 30 91 ? ? ? A . n A 1 31 SER 31 92 ? ? ? A . n A 1 32 LYS 32 93 ? ? ? A . n A 1 33 GLY 33 94 ? ? ? A . n A 1 34 THR 34 95 ? ? ? A . n A 1 35 GLY 35 96 ? ? ? A . n A 1 36 LEU 36 97 ? ? ? A . n A 1 37 LYS 37 98 98 LYS ALA A . n A 1 38 ASN 38 99 99 ASN ASN A . n A 1 39 VAL 39 100 100 VAL VAL A . n A 1 40 GLU 40 101 101 GLU GLU A . n A 1 41 PRO 41 102 102 PRO PRO A . n A 1 42 ARG 42 103 103 ARG ARG A . n A 1 43 VAL 43 104 104 VAL VAL A . n A 1 44 THR 44 105 105 THR THR A . n A 1 45 PRO 45 106 106 PRO PRO A . n A 1 46 LYS 46 107 107 LYS LYS A . n A 1 47 GLU 47 108 108 GLU GLU A . n A 1 48 LEU 48 109 109 LEU LEU A . n A 1 49 LEU 49 110 110 LEU LEU A . n A 1 50 GLU 50 111 111 GLU GLU A . n A 1 51 TRP 51 112 112 TRP TRP A . n A 1 52 GLN 52 113 113 GLN GLN A . n A 1 53 THR 53 114 114 THR THR A . n A 1 54 ASN 54 115 115 ASN ASN A . n A 1 55 TRP 55 116 116 TRP TRP A . n A 1 56 LYS 56 117 117 LYS LYS A . n A 1 57 LYS 57 118 118 LYS LYS A . n A 1 58 ILE 58 119 119 ILE ILE A . n A 1 59 MET 59 120 120 MET MET A . n A 1 60 LYS 60 121 121 LYS LYS A . n A 1 61 ARG 61 122 122 ARG ARG A . n A 1 62 ASP 62 123 123 ASP ASP A . n A 1 63 SER 63 124 124 SER SER A . n A 1 64 ARG 64 125 125 ARG ARG A . n A 1 65 ILE 65 126 126 ILE ILE A . n A 1 66 TYR 66 127 127 TYR TYR A . n A 1 67 PHE 67 128 128 PHE PHE A . n A 1 68 ASP 68 129 129 ASP ASP A . n A 1 69 ILE 69 130 130 ILE ILE A . n A 1 70 THR 70 131 131 THR THR A . n A 1 71 ASP 71 132 132 ASP ASP A . n A 1 72 ASP 72 133 133 ASP ASP A . n A 1 73 VAL 73 134 134 VAL VAL A . n A 1 74 GLU 74 135 135 GLU GLU A . n A 1 75 MET 75 136 136 MET MET A . n A 1 76 ASN 76 137 137 ASN ASN A . n A 1 77 THR 77 138 138 THR THR A . n A 1 78 TYR 78 139 139 TYR TYR A . n A 1 79 ASN 79 140 140 ASN ASN A . n A 1 80 LYS 80 141 141 LYS LYS A . n A 1 81 SER 81 142 142 SER SER A . n A 1 82 LYS 82 143 143 LYS LYS A . n A 1 83 MET 83 144 144 MET MET A . n A 1 84 ASP 84 145 145 ASP ASP A . n A 1 85 LYS 85 146 146 LYS LYS A . n A 1 86 ARG 86 147 147 ARG ARG A . n A 1 87 ARG 87 148 148 ARG ARG A . n A 1 88 ASP 88 149 149 ASP ASP A . n A 1 89 LEU 89 150 150 LEU LEU A . n A 1 90 LEU 90 151 151 LEU LEU A . n A 1 91 LYS 91 152 152 LYS LYS A . n A 1 92 ARG 92 153 153 ARG ARG A . n A 1 93 GLY 93 154 154 GLY GLY A . n A 1 94 PHE 94 155 155 PHE PHE A . n A 1 95 LEU 95 156 156 LEU LEU A . n A 1 96 THR 96 157 157 THR THR A . n A 1 97 LEU 97 158 158 LEU LEU A . n A 1 98 GLY 98 159 159 GLY GLY A . n A 1 99 ALA 99 160 160 ALA ALA A . n A 1 100 GLN 100 161 161 GLN GLN A . n A 1 101 ILE 101 162 162 ILE ILE A . n A 1 102 THR 102 163 163 THR THR A . n A 1 103 GLN 103 164 164 GLN GLN A . n A 1 104 PHE 104 165 165 PHE PHE A . n A 1 105 PHE 105 166 166 PHE PHE A . n A 1 106 ASP 106 167 167 ASP ASP A . n A 1 107 THR 107 168 168 THR THR A . n A 1 108 THR 108 169 169 THR THR A . n A 1 109 VAL 109 170 170 VAL VAL A . n A 1 110 THR 110 171 171 THR THR A . n A 1 111 ILE 111 172 172 ILE ILE A . n A 1 112 VAL 112 173 173 VAL VAL A . n A 1 113 ILE 113 174 174 ILE ILE A . n A 1 114 THR 114 175 175 THR THR A . n A 1 115 ARG 115 176 176 ARG ARG A . n A 1 116 ARG 116 177 177 ARG ARG A . n A 1 117 SER 117 178 178 SER SER A . n A 1 118 VAL 118 179 179 VAL VAL A . n A 1 119 GLU 119 180 180 GLU GLU A . n A 1 120 ASN 120 181 181 ASN ASN A . n A 1 121 ILE 121 182 182 ILE ILE A . n A 1 122 TYR 122 183 183 TYR TYR A . n A 1 123 LEU 123 184 184 LEU LEU A . n A 1 124 LEU 124 185 185 LEU LEU A . n A 1 125 LYS 125 186 186 LYS LYS A . n A 1 126 ASP 126 187 187 ASP ASP A . n A 1 127 THR 127 188 188 THR THR A . n A 1 128 ASP 128 189 189 ASP ASP A . n A 1 129 ILE 129 190 190 ILE ILE A . n A 1 130 LEU 130 191 191 LEU LEU A . n A 1 131 SER 131 192 192 SER SER A . n A 1 132 ARG 132 193 193 ARG ARG A . n A 1 133 ALA 133 194 194 ALA ALA A . n A 1 134 LYS 134 195 195 LYS LYS A . n A 1 135 LYS 135 196 196 LYS LYS A . n A 1 136 ASN 136 197 197 ASN ASN A . n A 1 137 TYR 137 198 198 TYR TYR A . n A 1 138 MET 138 199 199 MET MET A . n A 1 139 LYS 139 200 200 LYS LYS A . n A 1 140 VAL 140 201 201 VAL VAL A . n A 1 141 TRP 141 202 202 TRP TRP A . n A 1 142 SER 142 203 203 SER SER A . n A 1 143 TYR 143 204 204 TYR TYR A . n A 1 144 GLU 144 205 205 GLU GLU A . n A 1 145 LYS 145 206 206 LYS LYS A . n A 1 146 ALA 146 207 207 ALA ALA A . n A 1 147 ALA 147 208 208 ALA ALA A . n A 1 148 ARG 148 209 209 ARG ARG A . n A 1 149 PHE 149 210 210 PHE PHE A . n A 1 150 LEU 150 211 211 LEU LEU A . n A 1 151 LYS 151 212 212 LYS LYS A . n A 1 152 ASN 152 213 213 ASN ASN A . n A 1 153 LEU 153 214 214 LEU LEU A . n A 1 154 ASP 154 215 215 ASP ASP A . n A 1 155 VAL 155 216 216 VAL VAL A . n A 1 156 ASP 156 217 217 ASP ASP A . n A 1 157 LEU 157 218 218 LEU LEU A . n A 1 158 ASP 158 219 219 ASP ASP A . n A 1 159 HIS 159 220 220 HIS HIS A . n A 1 160 LEU 160 221 ? ? ? A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2890 ? 2 MORE -82 ? 2 'SSA (A^2)' 15880 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/3 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.5563333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-07 2 'Structure model' 1 1 2011-12-21 3 'Structure model' 1 2 2013-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -21.3364 18.9067 19.2130 0.4678 0.2152 0.3920 -0.1353 -0.0525 -0.0925 1.9308 0.8821 3.5740 0.1381 -0.3684 -1.5007 -0.0168 0.1132 0.1651 -1.3666 0.3953 0.4425 0.8596 0.0376 -0.1696 'X-RAY DIFFRACTION' 2 ? refined -27.5838 -5.6491 20.8475 0.4928 0.2011 0.2101 -0.1595 -0.0776 0.0367 1.8316 0.1219 1.1129 -0.2710 0.0579 0.2222 0.0993 -0.0860 -0.2814 0.2220 -0.1800 -0.0802 0.3033 0.1132 0.0643 'X-RAY DIFFRACTION' 3 ? refined -34.6185 -15.9327 -3.8087 0.8395 0.3363 0.3690 0.1592 -0.1542 -0.1277 5.8636 4.6720 6.3800 -1.7303 -5.0527 4.1137 -1.6864 0.2567 0.9042 1.5486 0.9564 -1.0096 1.4584 -0.5129 0.5822 'X-RAY DIFFRACTION' 4 ? refined -25.7734 -13.7309 1.1740 0.5181 0.4015 0.3961 0.1176 0.0772 0.0469 4.4966 3.2303 5.9320 -1.8555 0.6618 1.2185 -0.2415 0.3853 -0.5756 0.4407 -0.2533 -0.1422 0.3101 1.0932 0.3992 'X-RAY DIFFRACTION' 5 ? refined -25.1499 -13.4297 16.8780 0.5833 0.4116 0.1656 -0.1332 -0.1323 0.0166 1.9404 2.3719 0.4289 0.1215 -0.6136 -1.0705 0.0305 0.4071 -0.3660 -0.0715 0.0479 -0.5066 0.9371 0.2136 -0.1239 'X-RAY DIFFRACTION' 6 ? refined -36.2030 -11.9279 14.7589 0.4459 0.0973 0.1997 -0.1241 -0.0330 0.0559 1.9000 0.1240 1.2021 0.0280 0.7768 0.1346 -0.1894 0.1900 -0.2168 0.0321 0.3388 -0.1422 -0.1997 0.6653 -0.0162 'X-RAY DIFFRACTION' 7 ? refined -47.7855 -12.4268 10.4345 0.5304 0.2079 0.2724 -0.0839 0.0831 0.0056 2.4370 7.3273 1.9328 1.6546 -0.7031 -3.6646 1.0081 -0.1181 0.1902 -1.2217 -0.7497 0.9922 -0.3165 0.6820 -0.2781 'X-RAY DIFFRACTION' 8 ? refined -43.2594 -11.9509 18.9753 0.5649 0.0651 0.2407 -0.1623 0.0229 -0.0237 2.2127 0.2054 0.8870 -0.3401 0.1584 -0.4623 0.0328 0.0008 -0.0368 0.6210 -0.1672 0.2570 -0.1084 0.2994 -0.0867 'X-RAY DIFFRACTION' 9 ? refined -29.8266 -2.5978 11.9125 0.4608 0.2511 0.3119 -0.1452 -0.0327 0.0301 2.5759 1.7480 1.2460 0.0534 -1.0320 0.0994 -0.2370 -0.0321 0.4755 -0.1697 0.1637 0.5563 -0.0683 -0.0843 0.0623 'X-RAY DIFFRACTION' 10 ? refined -17.9068 -1.3348 11.5798 0.6811 0.5084 0.2314 -0.1972 -0.1289 -0.1682 3.2786 4.6007 6.6624 -3.3780 -2.6818 1.2019 0.7344 0.6123 0.4261 -1.0235 0.6263 -0.5858 0.4878 0.7780 -1.3690 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A and resid 98:109' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain A and resid 110:132' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'chain A and resid 133:138' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'chain A and resid 139:149' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'chain A and resid 150:166' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'chain A and resid 167:179' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? 'chain A and resid 180:189' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? 'chain A and resid 190:199' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? 'chain A and resid 200:213' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? 'chain A and resid 214:219' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 98 ? CG ? A LYS 37 CG 2 1 Y 1 A LYS 98 ? CD ? A LYS 37 CD 3 1 Y 1 A LYS 98 ? CE ? A LYS 37 CE 4 1 Y 1 A LYS 98 ? NZ ? A LYS 37 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 62 ? A GLY 1 2 1 Y 1 A SER 63 ? A SER 2 3 1 Y 1 A HIS 64 ? A HIS 3 4 1 Y 1 A MET 65 ? A MET 4 5 1 Y 1 A GLN 66 ? A GLN 5 6 1 Y 1 A GLN 67 ? A GLN 6 7 1 Y 1 A GLN 68 ? A GLN 7 8 1 Y 1 A GLN 69 ? A GLN 8 9 1 Y 1 A HIS 70 ? A HIS 9 10 1 Y 1 A LEU 71 ? A LEU 10 11 1 Y 1 A HIS 72 ? A HIS 11 12 1 Y 1 A GLU 73 ? A GLU 12 13 1 Y 1 A LYS 74 ? A LYS 13 14 1 Y 1 A LYS 75 ? A LYS 14 15 1 Y 1 A ARG 76 ? A ARG 15 16 1 Y 1 A ALA 77 ? A ALA 16 17 1 Y 1 A ARG 78 ? A ARG 17 18 1 Y 1 A ILE 79 ? A ILE 18 19 1 Y 1 A GLU 80 ? A GLU 19 20 1 Y 1 A ARG 81 ? A ARG 20 21 1 Y 1 A ALA 82 ? A ALA 21 22 1 Y 1 A ARG 83 ? A ARG 22 23 1 Y 1 A SER 84 ? A SER 23 24 1 Y 1 A ILE 85 ? A ILE 24 25 1 Y 1 A GLU 86 ? A GLU 25 26 1 Y 1 A GLY 87 ? A GLY 26 27 1 Y 1 A ALA 88 ? A ALA 27 28 1 Y 1 A VAL 89 ? A VAL 28 29 1 Y 1 A GLN 90 ? A GLN 29 30 1 Y 1 A VAL 91 ? A VAL 30 31 1 Y 1 A SER 92 ? A SER 31 32 1 Y 1 A LYS 93 ? A LYS 32 33 1 Y 1 A GLY 94 ? A GLY 33 34 1 Y 1 A THR 95 ? A THR 34 35 1 Y 1 A GLY 96 ? A GLY 35 36 1 Y 1 A LEU 97 ? A LEU 36 37 1 Y 1 A LEU 221 ? A LEU 160 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 3 3 SO4 SO4 A . E 3 HOH 1 4 4 HOH HOH A . E 3 HOH 2 5 5 HOH HOH A . E 3 HOH 3 10 10 HOH HOH A . E 3 HOH 4 14 14 HOH HOH A . E 3 HOH 5 15 15 HOH HOH A . E 3 HOH 6 18 18 HOH HOH A . E 3 HOH 7 19 19 HOH HOH A . E 3 HOH 8 21 21 HOH HOH A . E 3 HOH 9 222 2 HOH HOH A . E 3 HOH 10 223 3 HOH HOH A . #