HEADER HYDROLASE 14-JAN-11 3QC2 TITLE CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BACOVA_03624) FROM TITLE 2 BACTEROIDES OVATUS AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03624, ZP_02066624.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 5-BLADED BETA PROPELLER FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 3QC2 1 REMARK SEQADV LINK REVDAT 2 20-JUL-11 3QC2 1 KEYWDS REVDAT 1 09-FEB-11 3QC2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BACOVA_03624) JRNL TITL 2 FROM BACTEROIDES OVATUS AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5925 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4060 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8052 ; 1.234 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9836 ; 0.798 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 728 ; 2.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;23.542 ;23.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ; 9.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ; 9.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 827 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6670 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1281 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3592 ; 0.326 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1452 ; 0.051 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5801 ; 0.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2333 ; 0.851 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 1.330 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 28 A 336 4 REMARK 3 1 B 28 B 336 4 REMARK 3 2 A 346 A 386 4 REMARK 3 2 B 346 B 386 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4596 ; 0.290 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 4596 ; 0.260 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8820 -38.4115 20.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0681 REMARK 3 T33: 0.0392 T12: -0.0343 REMARK 3 T13: -0.0171 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.8656 L22: 0.9823 REMARK 3 L33: 0.9498 L12: 0.0557 REMARK 3 L13: 0.3814 L23: 0.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.1060 S13: 0.0407 REMARK 3 S21: 0.0207 S22: 0.0480 S23: 0.0089 REMARK 3 S31: -0.0796 S32: -0.0170 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 386 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1771 -56.4398 -15.5298 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0317 REMARK 3 T33: 0.0413 T12: -0.0011 REMARK 3 T13: -0.0252 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.8432 L22: 0.5549 REMARK 3 L33: 0.9643 L12: 0.2732 REMARK 3 L13: 0.4606 L23: 0.2507 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0525 S13: 0.1038 REMARK 3 S21: -0.0691 S22: -0.0557 S23: 0.0343 REMARK 3 S31: -0.1519 S32: 0.0510 S33: 0.0885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. POLYEYHYLENE GLYCOL FRAGMENTS FROM THE REMARK 3 CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE 3.ATOM REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE REMARK 3 EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. THE MODELING OF A CIS REMARK 3 PEPTIDE BETWEEN GLY 39 AND GLY 40 ON THE A AND B-SUBUNITS IS REMARK 3 SUPPORTED BY ELECTRON DENSITY. 6. EVEN THOUGH ASN 77 ON THE B- REMARK 3 SUBUNIT IS FLAGGED AS A RAMACHANDRAN OUTLIER IN MOLPROBITY, ITS REMARK 3 MODELING IS SUPPORTED BY ELECTRON DENSITY.7. HYDROGENS HAVE BEEN REMARK 3 ADDED IN THE RIDING POSITIONS. 8.UNEXPLAINED ELECTRON DENSITIES REMARK 3 NEAR THE SIDECHAINS OF LYS 202 ON THE A AND B CHAINS WERE NOT REMARK 3 MODELED. REMARK 4 REMARK 4 3QC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537,0.9795,0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.590 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0% POLYETHYLENE GLYCOL 300, 0.1M REMARK 280 PHOSPHATE-CITRATE PH 4.2, ADDITIVE: 0.003 M FRUCTOSE, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.02800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.01400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.52100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.50700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY B 0 REMARK 465 GLN B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 ASN B 27 REMARK 465 ASP B 343 REMARK 465 GLY B 344 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 27 CG OD1 ND2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 LYS A 32 CE NZ REMARK 470 LYS A 45 NZ REMARK 470 LYS A 58 CE NZ REMARK 470 ARG A 104 CZ NH1 NH2 REMARK 470 ARG A 165 NE CZ NH1 NH2 REMARK 470 LYS A 190 CD CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 LYS A 212 CE NZ REMARK 470 LYS A 214 CE NZ REMARK 470 LYS A 256 NZ REMARK 470 LYS A 281 NZ REMARK 470 LYS A 377 CD CE NZ REMARK 470 HIS B 28 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 29 CD CE NZ REMARK 470 LYS B 32 CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ILE B 101 CG1 CG2 CD1 REMARK 470 GLN B 120 CD OE1 NE2 REMARK 470 LYS B 190 NZ REMARK 470 LYS B 212 CE NZ REMARK 470 LYS B 223 NZ REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LYS B 337 CG CD CE NZ REMARK 470 THR B 345 OG1 CG2 REMARK 470 LYS B 368 CE NZ REMARK 470 LYS B 377 CD CE NZ REMARK 470 LYS B 381 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 76.77 -104.28 REMARK 500 PHE A 76 -156.12 -153.37 REMARK 500 ASN A 77 75.17 24.49 REMARK 500 VAL A 99 -84.14 -83.79 REMARK 500 ILE A 101 117.60 -29.93 REMARK 500 ASP A 145 74.73 36.21 REMARK 500 HIS A 166 -61.76 -124.52 REMARK 500 SER A 203 86.08 62.99 REMARK 500 LEU A 241 -6.73 69.49 REMARK 500 ASP A 266 66.50 -102.96 REMARK 500 GLU A 349 -25.87 -155.40 REMARK 500 SER A 367 -20.31 -142.69 REMARK 500 ARG A 378 63.92 -158.53 REMARK 500 LYS B 29 35.22 -95.17 REMARK 500 ASN B 31 76.99 -117.37 REMARK 500 PHE B 76 -154.88 -151.83 REMARK 500 ASN B 77 76.43 21.32 REMARK 500 VAL B 99 -68.60 -91.19 REMARK 500 ASP B 145 71.45 35.67 REMARK 500 HIS B 166 -57.49 -120.61 REMARK 500 SER B 203 77.61 64.02 REMARK 500 LEU B 241 -3.76 72.86 REMARK 500 GLU B 349 -23.83 -158.37 REMARK 500 ARG B 378 62.66 -157.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 391 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 392 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416748 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 24-386) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3QC2 A 24 386 UNP A7M0J4 A7M0J4_BACOV 24 386 DBREF 3QC2 B 24 386 UNP A7M0J4 A7M0J4_BACOV 24 386 SEQADV 3QC2 GLY A 0 UNP A7M0J4 EXPRESSION TAG SEQADV 3QC2 GLY B 0 UNP A7M0J4 EXPRESSION TAG SEQRES 1 A 364 GLY GLN SER SER ASN HIS LYS GLU ASN LYS LEU PRO ASP SEQRES 2 A 364 TRP ALA PHE GLY GLY PHE GLU ARG PRO LYS ASN VAL ASN SEQRES 3 A 364 PRO VAL ILE SER PRO ILE GLU ASN THR LYS PHE TYR CYS SEQRES 4 A 364 PRO LEU THR LYS ASP SER ILE ALA TRP GLU SER ASN ASP SEQRES 5 A 364 THR PHE ASN PRO ALA ALA THR LEU TYR ASN GLY GLU ILE SEQRES 6 A 364 VAL VAL LEU TYR ARG ALA GLU ASP LYS SER GLY VAL GLY SEQRES 7 A 364 ILE GLY HIS ARG THR SER ARG LEU GLY TYR ALA THR SER SEQRES 8 A 364 THR ASP GLY THR HIS PHE GLN ARG GLU LYS THR PRO VAL SEQRES 9 A 364 PHE TYR PRO ASP ASN ASP SER GLN LYS GLU LEU GLU TRP SEQRES 10 A 364 PRO GLY GLY CYS GLU ASP PRO ARG ILE ALA VAL THR ASP SEQRES 11 A 364 ASP GLY LEU TYR VAL MSE MSE TYR THR GLN TRP ASN ARG SEQRES 12 A 364 HIS VAL PRO ARG LEU ALA VAL ALA THR SER ARG ASN LEU SEQRES 13 A 364 LYS ASP TRP THR LYS HIS GLY PRO ALA PHE ALA LYS ALA SEQRES 14 A 364 PHE ASP GLY LYS PHE PHE ASN LEU GLY CYS LYS SER GLY SEQRES 15 A 364 SER ILE LEU THR GLU VAL VAL LYS GLY LYS GLN VAL ILE SEQRES 16 A 364 LYS LYS VAL ASN GLY LYS TYR PHE MSE TYR TRP GLY GLU SEQRES 17 A 364 GLU HIS VAL PHE ALA ALA THR SER ASP ASP LEU ILE HIS SEQRES 18 A 364 TRP THR PRO ILE VAL ASN ILE ASP GLY SER LEU LYS LYS SEQRES 19 A 364 LEU PHE SER PRO ARG ASP GLY TYR PHE ASP SER HIS LEU SEQRES 20 A 364 THR GLU CYS GLY PRO PRO ALA ILE TYR THR PRO LYS GLY SEQRES 21 A 364 ILE VAL LEU LEU TYR ASN GLY LYS ASN HIS SER GLY ARG SEQRES 22 A 364 GLY ASP LYS ARG TYR THR ALA ASN VAL TYR ALA ALA GLY SEQRES 23 A 364 GLN ALA LEU PHE ASP ALA ASN ASP PRO THR ARG PHE ILE SEQRES 24 A 364 THR ARG LEU ASP GLU PRO PHE PHE ARG PRO MSE ASP SER SEQRES 25 A 364 PHE GLU LYS SER GLY GLN TYR VAL ASP GLY THR VAL PHE SEQRES 26 A 364 ILE GLU GLY MSE VAL TYR PHE LYS ASN LYS TRP TYR LEU SEQRES 27 A 364 TYR TYR GLY CYS ALA ASP SER LYS VAL GLY VAL ALA VAL SEQRES 28 A 364 TYR ASP PRO LYS ARG PRO ALA LYS ALA ASP PRO LEU PRO SEQRES 1 B 364 GLY GLN SER SER ASN HIS LYS GLU ASN LYS LEU PRO ASP SEQRES 2 B 364 TRP ALA PHE GLY GLY PHE GLU ARG PRO LYS ASN VAL ASN SEQRES 3 B 364 PRO VAL ILE SER PRO ILE GLU ASN THR LYS PHE TYR CYS SEQRES 4 B 364 PRO LEU THR LYS ASP SER ILE ALA TRP GLU SER ASN ASP SEQRES 5 B 364 THR PHE ASN PRO ALA ALA THR LEU TYR ASN GLY GLU ILE SEQRES 6 B 364 VAL VAL LEU TYR ARG ALA GLU ASP LYS SER GLY VAL GLY SEQRES 7 B 364 ILE GLY HIS ARG THR SER ARG LEU GLY TYR ALA THR SER SEQRES 8 B 364 THR ASP GLY THR HIS PHE GLN ARG GLU LYS THR PRO VAL SEQRES 9 B 364 PHE TYR PRO ASP ASN ASP SER GLN LYS GLU LEU GLU TRP SEQRES 10 B 364 PRO GLY GLY CYS GLU ASP PRO ARG ILE ALA VAL THR ASP SEQRES 11 B 364 ASP GLY LEU TYR VAL MSE MSE TYR THR GLN TRP ASN ARG SEQRES 12 B 364 HIS VAL PRO ARG LEU ALA VAL ALA THR SER ARG ASN LEU SEQRES 13 B 364 LYS ASP TRP THR LYS HIS GLY PRO ALA PHE ALA LYS ALA SEQRES 14 B 364 PHE ASP GLY LYS PHE PHE ASN LEU GLY CYS LYS SER GLY SEQRES 15 B 364 SER ILE LEU THR GLU VAL VAL LYS GLY LYS GLN VAL ILE SEQRES 16 B 364 LYS LYS VAL ASN GLY LYS TYR PHE MSE TYR TRP GLY GLU SEQRES 17 B 364 GLU HIS VAL PHE ALA ALA THR SER ASP ASP LEU ILE HIS SEQRES 18 B 364 TRP THR PRO ILE VAL ASN ILE ASP GLY SER LEU LYS LYS SEQRES 19 B 364 LEU PHE SER PRO ARG ASP GLY TYR PHE ASP SER HIS LEU SEQRES 20 B 364 THR GLU CYS GLY PRO PRO ALA ILE TYR THR PRO LYS GLY SEQRES 21 B 364 ILE VAL LEU LEU TYR ASN GLY LYS ASN HIS SER GLY ARG SEQRES 22 B 364 GLY ASP LYS ARG TYR THR ALA ASN VAL TYR ALA ALA GLY SEQRES 23 B 364 GLN ALA LEU PHE ASP ALA ASN ASP PRO THR ARG PHE ILE SEQRES 24 B 364 THR ARG LEU ASP GLU PRO PHE PHE ARG PRO MSE ASP SER SEQRES 25 B 364 PHE GLU LYS SER GLY GLN TYR VAL ASP GLY THR VAL PHE SEQRES 26 B 364 ILE GLU GLY MSE VAL TYR PHE LYS ASN LYS TRP TYR LEU SEQRES 27 B 364 TYR TYR GLY CYS ALA ASP SER LYS VAL GLY VAL ALA VAL SEQRES 28 B 364 TYR ASP PRO LYS ARG PRO ALA LYS ALA ASP PRO LEU PRO MODRES 3QC2 MSE A 158 MET SELENOMETHIONINE MODRES 3QC2 MSE A 159 MET SELENOMETHIONINE MODRES 3QC2 MSE A 226 MET SELENOMETHIONINE MODRES 3QC2 MSE A 332 MET SELENOMETHIONINE MODRES 3QC2 MSE A 351 MET SELENOMETHIONINE MODRES 3QC2 MSE B 158 MET SELENOMETHIONINE MODRES 3QC2 MSE B 159 MET SELENOMETHIONINE MODRES 3QC2 MSE B 226 MET SELENOMETHIONINE MODRES 3QC2 MSE B 332 MET SELENOMETHIONINE MODRES 3QC2 MSE B 351 MET SELENOMETHIONINE HET MSE A 158 8 HET MSE A 159 8 HET MSE A 226 8 HET MSE A 332 8 HET MSE A 351 8 HET MSE B 158 8 HET MSE B 159 8 HET MSE B 226 8 HET MSE B 332 8 HET MSE B 351 8 HET PGE A 390 10 HET PEG A 391 6 HET PEG B 387 7 HET PEG B 388 7 HET PEG B 389 7 HET PGE B 392 10 HETNAM MSE SELENOMETHIONINE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PGE 2(C6 H14 O4) FORMUL 4 PEG 4(C4 H10 O3) FORMUL 9 HOH *346(H2 O) HELIX 1 1 GLN A 134 TRP A 139 1 6 HELIX 2 2 LYS A 190 LYS A 195 1 6 HELIX 3 3 ASP A 333 LYS A 337 5 5 HELIX 4 4 GLN B 134 TRP B 139 1 6 HELIX 5 5 LYS B 190 LYS B 195 1 6 HELIX 6 6 ASP B 333 SER B 338 1 6 LINK C VAL A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N TYR A 160 1555 1555 1.33 LINK C PHE A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N TYR A 227 1555 1555 1.34 LINK C PRO A 331 N MSE A 332 1555 1555 1.34 LINK C MSE A 332 N ASP A 333 1555 1555 1.33 LINK C GLY A 350 N MSE A 351 1555 1555 1.33 LINK C MSE A 351 N VAL A 352 1555 1555 1.33 LINK C VAL B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N MSE B 159 1555 1555 1.32 LINK C MSE B 159 N TYR B 160 1555 1555 1.33 LINK C PHE B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N TYR B 227 1555 1555 1.34 LINK C PRO B 331 N MSE B 332 1555 1555 1.34 LINK C MSE B 332 N ASP B 333 1555 1555 1.34 LINK C GLY B 350 N MSE B 351 1555 1555 1.32 LINK C MSE B 351 N VAL B 352 1555 1555 1.34 CISPEP 1 GLY A 39 GLY A 40 0 1.39 CISPEP 2 ASN A 48 PRO A 49 0 -1.07 CISPEP 3 TRP A 139 PRO A 140 0 1.07 CISPEP 4 GLY B 39 GLY B 40 0 1.01 CISPEP 5 ASN B 48 PRO B 49 0 -2.18 CISPEP 6 TRP B 139 PRO B 140 0 1.83 SITE 1 AC1 9 LEU A 257 PHE A 258 ARG A 323 HOH A 437 SITE 2 AC1 9 HOH A 475 LEU B 257 PRO B 260 ARG B 261 SITE 3 AC1 9 ARG B 323 SITE 1 AC2 3 ASP A 35 ALA A 37 TYR A 374 SITE 1 AC3 3 SER B 133 GLN B 134 HIS B 184 SITE 1 AC4 3 LYS B 195 GLY B 252 HOH B 729 SITE 1 AC5 1 PHE B 196 SITE 1 AC6 5 ASN A 46 ASN A 48 ASN B 56 LYS B 58 SITE 2 AC6 5 HOH B 407 CRYST1 137.070 137.070 81.042 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007296 0.004212 0.000000 0.00000 SCALE2 0.000000 0.008424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012339 0.00000