HEADER OXIDOREDUCTASE 17-JAN-11 3QCP TITLE QSOX FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: QSOX FROM TRYPANOSOMA BRUCEI (TBQSOX); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-485; COMPND 5 EC: 1.8.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: QSOX, TB927.6.1850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ERV FOLD, THIOREDOXIN FOLD, SULFHYDRYL OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ALON,D.FASS REVDAT 4 13-SEP-23 3QCP 1 REMARK SEQADV REVDAT 3 29-AUG-12 3QCP 1 JRNL REVDAT 2 22-AUG-12 3QCP 1 JRNL REVDAT 1 30-MAY-12 3QCP 0 JRNL AUTH A.ALON,I.GROSSMAN,Y.GAT,V.K.KODALI,F.DIMAIO,T.MEHLMAN, JRNL AUTH 2 G.HARAN,D.BAKER,C.THORPE,D.FASS JRNL TITL THE DYNAMIC DISULPHIDE RELAY OF QUIESCIN SULPHYDRYL OXIDASE. JRNL REF NATURE V. 488 414 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22801504 JRNL DOI 10.1038/NATURE11267 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_629) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4833 - 4.9510 1.00 2335 178 0.1810 0.2131 REMARK 3 2 4.9510 - 3.9317 1.00 2236 168 0.1530 0.1924 REMARK 3 3 3.9317 - 3.4353 1.00 2211 154 0.2011 0.2294 REMARK 3 4 3.4353 - 3.1215 1.00 2181 173 0.2062 0.3074 REMARK 3 5 3.1215 - 2.8979 1.00 2189 163 0.2160 0.2658 REMARK 3 6 2.8979 - 2.7271 1.00 2180 155 0.2204 0.2911 REMARK 3 7 2.7271 - 2.5906 1.00 2178 153 0.2389 0.3462 REMARK 3 8 2.5906 - 2.4778 1.00 2159 150 0.2270 0.2730 REMARK 3 9 2.4778 - 2.3825 1.00 2170 159 0.2370 0.2937 REMARK 3 10 2.3825 - 2.3000 0.98 2117 155 0.2939 0.3504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 46.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3397 REMARK 3 ANGLE : 1.142 4612 REMARK 3 CHIRALITY : 0.092 499 REMARK 3 PLANARITY : 0.006 597 REMARK 3 DIHEDRAL : 15.463 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 29:48) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8993 -31.6709 -4.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.2712 REMARK 3 T33: 0.3572 T12: -0.0065 REMARK 3 T13: 0.0172 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.8031 L22: 0.9495 REMARK 3 L33: 0.3893 L12: -0.7299 REMARK 3 L13: 0.1739 L23: 0.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.0202 S13: -0.1979 REMARK 3 S21: 0.1453 S22: 0.0217 S23: 0.3960 REMARK 3 S31: 0.0659 S32: -0.0029 S33: 0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 49:56) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3729 -25.1906 -17.6483 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.3347 REMARK 3 T33: 0.3178 T12: 0.0429 REMARK 3 T13: -0.1059 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 3.1340 L22: 7.2294 REMARK 3 L33: 1.8471 L12: -1.8233 REMARK 3 L13: -0.7407 L23: 3.0453 REMARK 3 S TENSOR REMARK 3 S11: 0.3316 S12: 0.6993 S13: -0.1319 REMARK 3 S21: -1.0821 S22: -0.3856 S23: 0.4214 REMARK 3 S31: -0.1732 S32: 0.2722 S33: 0.0123 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 57:76) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6580 -30.3186 0.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.1607 REMARK 3 T33: 0.2825 T12: -0.0133 REMARK 3 T13: 0.0570 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.7682 L22: 0.6771 REMARK 3 L33: 0.5485 L12: 0.0833 REMARK 3 L13: 0.1627 L23: 0.6066 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: -0.0500 S13: -0.3675 REMARK 3 S21: 0.2311 S22: -0.0902 S23: -0.0608 REMARK 3 S31: 0.0213 S32: -0.1424 S33: -0.0086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 77:91) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8447 -17.0942 0.1589 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.1979 REMARK 3 T33: 0.1859 T12: 0.0406 REMARK 3 T13: 0.0096 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.5531 L22: 1.7902 REMARK 3 L33: 1.7789 L12: -1.2691 REMARK 3 L13: 1.7907 L23: -0.4969 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: -0.2111 S13: 0.3157 REMARK 3 S21: -0.2383 S22: -0.1413 S23: -0.1823 REMARK 3 S31: 0.0559 S32: -0.2387 S33: 0.2060 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 92:134) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1917 -28.2139 -7.2905 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.1808 REMARK 3 T33: 0.3116 T12: 0.0100 REMARK 3 T13: 0.0546 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.0529 L22: 0.7347 REMARK 3 L33: 1.4391 L12: 0.5196 REMARK 3 L13: 0.1608 L23: -0.4547 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 0.3270 S13: -0.1324 REMARK 3 S21: -0.1177 S22: -0.1294 S23: -0.2398 REMARK 3 S31: -0.0060 S32: 0.0523 S33: 0.0250 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 135:154) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3907 -22.9040 -9.7599 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.2706 REMARK 3 T33: 0.3131 T12: 0.0136 REMARK 3 T13: 0.0232 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 1.3530 L22: 0.5358 REMARK 3 L33: 3.7086 L12: -0.4900 REMARK 3 L13: 0.6145 L23: -0.7624 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.2601 S13: 0.4960 REMARK 3 S21: -0.2137 S22: -0.1901 S23: -0.0912 REMARK 3 S31: 0.4447 S32: -0.0197 S33: 0.0675 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 155:170) REMARK 3 ORIGIN FOR THE GROUP (A): 50.2011 -16.4957 -2.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.2906 T22: 0.1165 REMARK 3 T33: 0.3822 T12: -0.0008 REMARK 3 T13: -0.0022 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3674 L22: 0.1769 REMARK 3 L33: 1.0176 L12: -0.1466 REMARK 3 L13: 0.2529 L23: 0.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: 0.0263 S13: 0.3090 REMARK 3 S21: -0.0837 S22: -0.2343 S23: -0.2783 REMARK 3 S31: -0.2457 S32: 0.1453 S33: 0.0950 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 171:180) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2586 -11.0086 -15.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.3294 REMARK 3 T33: 0.4179 T12: 0.0519 REMARK 3 T13: 0.0014 T23: 0.1761 REMARK 3 L TENSOR REMARK 3 L11: 2.6427 L22: 1.8293 REMARK 3 L33: 1.1234 L12: 0.1972 REMARK 3 L13: -0.3692 L23: -0.7645 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: 0.2172 S13: 0.1079 REMARK 3 S21: 0.1263 S22: -0.2658 S23: -0.1908 REMARK 3 S31: -0.2793 S32: 0.2201 S33: -0.0039 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 181:197) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0961 -21.9027 -7.8864 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2817 REMARK 3 T33: 0.3134 T12: 0.0434 REMARK 3 T13: -0.0104 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 1.4913 L22: 3.0877 REMARK 3 L33: 4.9107 L12: -1.3827 REMARK 3 L13: -0.8778 L23: -1.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: 0.1198 S13: -0.1346 REMARK 3 S21: 0.0647 S22: 0.0219 S23: 0.2711 REMARK 3 S31: -0.3206 S32: -0.7004 S33: -0.2237 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 198:240) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9882 -10.8028 -20.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.3670 REMARK 3 T33: 0.3041 T12: 0.0563 REMARK 3 T13: 0.0201 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 0.6722 L22: 0.5311 REMARK 3 L33: 1.0131 L12: -0.4277 REMARK 3 L13: 0.4834 L23: 0.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: 0.1735 S13: -0.0539 REMARK 3 S21: -0.0690 S22: -0.3025 S23: 0.0799 REMARK 3 S31: -0.1088 S32: -0.2790 S33: -0.0466 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 241:276) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8670 4.5322 -23.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.4974 REMARK 3 T33: 0.5502 T12: 0.1949 REMARK 3 T13: -0.1605 T23: 0.6834 REMARK 3 L TENSOR REMARK 3 L11: 0.0939 L22: 0.1496 REMARK 3 L33: 0.2284 L12: 0.1111 REMARK 3 L13: -0.1038 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 0.3077 S13: 0.3282 REMARK 3 S21: -0.1295 S22: -0.1440 S23: -0.1135 REMARK 3 S31: -0.1391 S32: 0.2118 S33: -0.0831 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 277:297) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0034 -2.3440 -13.4734 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2043 REMARK 3 T33: 0.2987 T12: 0.0015 REMARK 3 T13: -0.0453 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 0.2677 L22: 1.8221 REMARK 3 L33: 1.1476 L12: -0.1530 REMARK 3 L13: 0.4984 L23: 0.3210 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: 0.0955 S13: 0.2064 REMARK 3 S21: 0.1272 S22: -0.2682 S23: -0.0194 REMARK 3 S31: -0.0207 S32: 0.1431 S33: 0.1325 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 298:333) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3496 -13.4874 -23.3459 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.4855 REMARK 3 T33: 0.2200 T12: 0.1098 REMARK 3 T13: -0.0764 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 1.8241 L22: 0.7275 REMARK 3 L33: 0.1519 L12: -0.0020 REMARK 3 L13: -0.0321 L23: 0.2190 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: 0.8531 S13: 0.0621 REMARK 3 S21: -0.1254 S22: -0.0825 S23: 0.0278 REMARK 3 S31: 0.0258 S32: -0.1369 S33: 0.0835 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 334:354) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2485 -7.5328 -33.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 1.0257 REMARK 3 T33: 0.3717 T12: 0.1783 REMARK 3 T13: -0.0162 T23: 0.3494 REMARK 3 L TENSOR REMARK 3 L11: 0.4225 L22: 0.5387 REMARK 3 L33: 1.0393 L12: 0.4523 REMARK 3 L13: 0.4276 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.5568 S13: 0.1351 REMARK 3 S21: -0.0346 S22: 0.0654 S23: 0.0273 REMARK 3 S31: 0.0663 S32: 0.2197 S33: 0.0558 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 355:369) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4608 -10.0134 -41.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.6607 T22: 1.3424 REMARK 3 T33: 0.4113 T12: 0.2497 REMARK 3 T13: -0.1143 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 0.4971 L22: 0.0046 REMARK 3 L33: 0.0211 L12: 0.0541 REMARK 3 L13: -0.1006 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.3122 S12: 0.6750 S13: 0.0817 REMARK 3 S21: -0.5493 S22: -0.3090 S23: -0.0459 REMARK 3 S31: 0.7096 S32: 0.5369 S33: -0.0506 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 370:388) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3498 -21.0005 -36.5194 REMARK 3 T TENSOR REMARK 3 T11: 0.5540 T22: 1.2531 REMARK 3 T33: 0.1819 T12: 0.1527 REMARK 3 T13: -0.1118 T23: -0.2070 REMARK 3 L TENSOR REMARK 3 L11: 1.1663 L22: 2.9113 REMARK 3 L33: 0.7783 L12: -1.0071 REMARK 3 L13: 0.3315 L23: -0.8716 REMARK 3 S TENSOR REMARK 3 S11: 0.2808 S12: 0.7770 S13: -0.1410 REMARK 3 S21: -0.8226 S22: -0.0064 S23: 0.0176 REMARK 3 S31: 0.2587 S32: -0.0478 S33: -0.1149 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 389:401) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7237 -25.9408 -29.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.4143 T22: 0.6828 REMARK 3 T33: 0.4675 T12: 0.1251 REMARK 3 T13: -0.2526 T23: -0.4285 REMARK 3 L TENSOR REMARK 3 L11: 0.4724 L22: 0.4576 REMARK 3 L33: 0.2887 L12: -0.4656 REMARK 3 L13: 0.3150 L23: -0.3157 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: 0.2921 S13: -0.1259 REMARK 3 S21: -0.1528 S22: -0.0746 S23: 0.0978 REMARK 3 S31: -0.0680 S32: -0.1950 S33: 0.0507 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 402:420) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9674 -19.8173 -40.2086 REMARK 3 T TENSOR REMARK 3 T11: 0.7843 T22: 1.3458 REMARK 3 T33: 0.6194 T12: -0.0251 REMARK 3 T13: -0.3913 T23: -0.1191 REMARK 3 L TENSOR REMARK 3 L11: 1.3882 L22: 1.8714 REMARK 3 L33: 2.0811 L12: 1.1935 REMARK 3 L13: 0.3343 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.2349 S12: 0.4343 S13: 0.0163 REMARK 3 S21: -0.5030 S22: -0.0727 S23: 0.3305 REMARK 3 S31: 0.6132 S32: 0.4245 S33: -0.1399 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 421:435) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9456 -6.8577 -27.4803 REMARK 3 T TENSOR REMARK 3 T11: 0.2615 T22: 0.9307 REMARK 3 T33: 0.3925 T12: 0.2407 REMARK 3 T13: -0.1609 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.0530 L22: 0.3727 REMARK 3 L33: 1.0705 L12: 0.5511 REMARK 3 L13: 0.9473 L23: 0.4821 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.2704 S13: 0.0258 REMARK 3 S21: -0.1451 S22: 0.0075 S23: 0.1664 REMARK 3 S31: 0.0677 S32: 0.0263 S33: 0.1044 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 436:446) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9030 -11.5821 -6.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.4438 T22: 0.4271 REMARK 3 T33: 0.7503 T12: 0.1556 REMARK 3 T13: -0.1244 T23: -0.2378 REMARK 3 L TENSOR REMARK 3 L11: 5.1972 L22: 2.4836 REMARK 3 L33: 4.5571 L12: -1.5906 REMARK 3 L13: -0.5166 L23: -2.4939 REMARK 3 S TENSOR REMARK 3 S11: -0.5672 S12: 0.3456 S13: -0.5797 REMARK 3 S21: 0.9433 S22: 0.4321 S23: -1.2619 REMARK 3 S31: -0.0589 S32: 0.0148 S33: 0.1059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3LLK AND 3ED3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-18% W/V POLYETHYLENE GLYCOL (PEG) REMARK 280 2K MONOMETHYL ETHER (MME), 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.18650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.69950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.18650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.69950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 VAL A 24 REMARK 465 ALA A 25 REMARK 465 THR A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 THR A 202 REMARK 465 ASP A 203 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 GLU A 447 REMARK 465 VAL A 448 REMARK 465 ASP A 449 REMARK 465 PRO A 450 REMARK 465 ALA A 451 REMARK 465 SER A 452 REMARK 465 LYS A 453 REMARK 465 ASP A 454 REMARK 465 ALA A 455 REMARK 465 ASN A 456 REMARK 465 VAL A 457 REMARK 465 GLY A 458 REMARK 465 ARG A 459 REMARK 465 ASN A 460 REMARK 465 VAL A 461 REMARK 465 GLU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 GLY A 465 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 GLY A 469 REMARK 465 ASP A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 472 REMARK 465 ALA A 473 REMARK 465 ARG A 474 REMARK 465 GLY A 475 REMARK 465 ASN A 476 REMARK 465 SER A 477 REMARK 465 LYS A 478 REMARK 465 GLU A 479 REMARK 465 VAL A 480 REMARK 465 ARG A 481 REMARK 465 SER A 482 REMARK 465 ASP A 483 REMARK 465 HIS A 484 REMARK 465 ALA A 485 REMARK 465 GLY A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 229 -69.64 -93.48 REMARK 500 PRO A 238 -169.68 -74.86 REMARK 500 ARG A 303 -72.62 -116.64 REMARK 500 ARG A 313 -125.11 62.57 REMARK 500 ALA A 332 -143.79 51.25 REMARK 500 PHE A 347 -51.54 -128.25 REMARK 500 ASN A 365 -71.32 -57.53 REMARK 500 LYS A 387 -69.50 -99.94 REMARK 500 ALA A 412 -114.74 58.64 REMARK 500 VAL A 435 -70.97 -56.67 REMARK 500 LEU A 437 160.07 174.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QD9 RELATED DB: PDB DBREF 3QCP A 20 486 UNP Q585M6 Q585M6_9TRYP 20 485 SEQADV 3QCP GLY A 16 UNP Q585M6 EXPRESSION TAG SEQADV 3QCP SER A 17 UNP Q585M6 EXPRESSION TAG SEQADV 3QCP HIS A 18 UNP Q585M6 EXPRESSION TAG SEQADV 3QCP MET A 19 UNP Q585M6 EXPRESSION TAG SEQRES 1 A 470 GLY SER HIS MET SER VAL ALA GLN VAL ALA THR GLY SER SEQRES 2 A 470 PRO ARG PRO GLY LEU PHE HIS LEU ASP SER SER VAL VAL SEQRES 3 A 470 ASP LEU SER GLY ASP ASP PHE SER ARG VAL HIS ARG VAL SEQRES 4 A 470 ALA PRO LEU CYS PRO TRP ILE VAL LEU PHE TYR ASN ASP SEQRES 5 A 470 GLY CYS GLY ALA CYS ARG ARG TYR ALA SER THR PHE SER SEQRES 6 A 470 LYS PHE ALA GLY GLY LEU LYS VAL GLU HIS GLY LYS ASP SEQRES 7 A 470 ALA LEU GLN ILE ALA THR ALA ALA ALA VAL ASN CYS ALA SEQRES 8 A 470 SER GLU VAL ASP LEU CYS ARG LYS TYR ASP ILE ASN PHE SEQRES 9 A 470 VAL PRO ARG LEU PHE PHE PHE TYR PRO ARG ASP SER CYS SEQRES 10 A 470 ARG SER ASN GLU GLU CYS GLY THR SER SER LEU GLU HIS SEQRES 11 A 470 VAL ALA PHE GLU ASN SER HIS LEU GLU VAL ASP GLU LEU SEQRES 12 A 470 GLU SER GLU VAL ARG ARG LEU VAL ASN LYS HIS MET VAL SEQRES 13 A 470 VAL ASP ASP SER LEU LYS GLU ARG CYS ILE ASP MET HIS SEQRES 14 A 470 PHE LYS LEU TYR THR SER LYS GLU GLU LEU VAL LYS ARG SEQRES 15 A 470 SER VAL SER SER THR ASP GLU SER GLY ARG PHE VAL GLU SEQRES 16 A 470 THR THR GLU LEU TYR ALA THR ASP ILE ALA GLY ALA PHE SEQRES 17 A 470 PHE SER ALA MET HIS TYR ASP VAL SER LEU VAL GLY THR SEQRES 18 A 470 GLU PRO ARG GLU ARG LEU THR ALA LEU GLU ASP PHE VAL SEQRES 19 A 470 LEU LEU VAL LYS ASP SER LEU PRO SER ILE GLY ALA ASP SEQRES 20 A 470 GLY VAL VAL SER ALA LEU GLU SER ILE THR ALA GLU ARG SEQRES 21 A 470 PRO PHE THR VAL ALA SER TRP GLN ASP ALA VAL VAL LYS SEQRES 22 A 470 SER GLY ILE PRO PHE ASP GLY SER PRO ARG ASN VAL ARG SEQRES 23 A 470 TRP ARG THR CYS ARG GLY SER SER PRO GLN TYR ARG GLY SEQRES 24 A 470 PHE PRO CYS GLY MET TRP LEU LEU LEU HIS ALA LEU THR SEQRES 25 A 470 VAL ASN THR PRO ALA ASP ARG ASN VAL LEU GLU VAL ILE SEQRES 26 A 470 GLN ASN TYR ILE ARG TYR PHE PHE SER CYS LYS GLU CYS SEQRES 27 A 470 ARG ASP HIS PHE ILE GLN PHE ASN PHE SER PRO ASN GLU SEQRES 28 A 470 ASP PRO VAL LEU GLN LEU TRP ARG ALA HIS ASN ASN VAL SEQRES 29 A 470 ASN ALA ARG LEU ALA ASN VAL LYS ASP GLY ALA ASP PRO SEQRES 30 A 470 LEU VAL PRO LYS ARG GLN PHE PRO THR LEU GLU ALA CYS SEQRES 31 A 470 THR GLU CYS TYR ASP GLY ALA GLY ASN PHE ILE GLU ALA SEQRES 32 A 470 HIS VAL THR GLY PHE LEU LYS GLN ARG TYR LEU TRP ASP SEQRES 33 A 470 PRO LYS ALA VAL GLY LEU MET GLU SER ASN ASP ASP LEU SEQRES 34 A 470 ASN GLU VAL ASP PRO ALA SER LYS ASP ALA ASN VAL GLY SEQRES 35 A 470 ARG ASN VAL GLU SER SER GLY LYS GLY LYS GLY ASP GLY SEQRES 36 A 470 GLY ALA ARG GLY ASN SER LYS GLU VAL ARG SER ASP HIS SEQRES 37 A 470 ALA GLY HET FAD A 1 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *185(H2 O) HELIX 1 1 ASP A 47 VAL A 51 5 5 HELIX 2 2 VAL A 54 CYS A 58 5 5 HELIX 3 3 CYS A 69 GLY A 85 1 17 HELIX 4 4 ASP A 93 ALA A 98 5 6 HELIX 5 5 GLU A 108 TYR A 115 1 8 HELIX 6 6 GLU A 154 MET A 170 1 17 HELIX 7 7 ASP A 173 ARG A 197 1 25 HELIX 8 8 TYR A 215 TYR A 229 1 15 HELIX 9 9 TYR A 229 GLY A 235 1 7 HELIX 10 10 PRO A 238 LEU A 256 1 19 HELIX 11 11 GLY A 260 SER A 270 1 11 HELIX 12 12 THR A 278 SER A 289 1 12 HELIX 13 13 GLY A 314 THR A 330 1 17 HELIX 14 14 ASN A 335 PHE A 348 1 14 HELIX 15 15 CYS A 350 ILE A 358 1 9 HELIX 16 16 ASP A 367 ALA A 384 1 18 HELIX 17 17 ALA A 418 TYR A 428 1 11 HELIX 18 18 ASP A 431 GLY A 436 1 6 HELIX 19 19 SER A 441 ASN A 446 5 6 SHEET 1 A 5 VAL A 40 ASP A 42 0 SHEET 2 A 5 THR A 99 ASN A 104 1 O ALA A 102 N VAL A 41 SHEET 3 A 5 TRP A 60 TYR A 65 1 N LEU A 63 O VAL A 103 SHEET 4 A 5 ARG A 122 PRO A 128 -1 O PHE A 124 N VAL A 62 SHEET 5 A 5 LEU A 143 ALA A 147 -1 O VAL A 146 N PHE A 125 SHEET 1 B 2 GLY A 295 SER A 296 0 SHEET 2 B 2 ASN A 299 VAL A 300 -1 O ASN A 299 N SER A 296 SSBOND 1 CYS A 58 CYS A 180 1555 1555 2.01 SSBOND 2 CYS A 69 CYS A 72 1555 1555 2.10 SSBOND 3 CYS A 105 CYS A 112 1555 1555 2.01 SSBOND 4 CYS A 132 CYS A 138 1555 1555 2.02 SSBOND 5 CYS A 305 CYS A 317 1555 1555 2.01 SSBOND 6 CYS A 350 CYS A 353 1555 1555 2.03 SSBOND 7 CYS A 405 CYS A 408 1555 1555 2.04 CISPEP 1 VAL A 120 PRO A 121 0 0.93 CISPEP 2 GLU A 237 PRO A 238 0 -3.82 CISPEP 3 PHE A 399 PRO A 400 0 1.34 SITE 1 AC1 22 ARG A 313 PRO A 316 CYS A 317 TRP A 320 SITE 2 AC1 22 LEU A 321 HIS A 324 GLU A 352 CYS A 353 SITE 3 AC1 22 HIS A 356 PHE A 357 TRP A 373 HIS A 376 SITE 4 AC1 22 ASN A 377 VAL A 379 ASN A 380 LEU A 383 SITE 5 AC1 22 LYS A 396 PHE A 399 TYR A 428 HOH A 539 SITE 6 AC1 22 HOH A 617 HOH A 637 CRYST1 112.373 61.399 74.655 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013395 0.00000