HEADER IMMUNE SYSTEM 17-JAN-11 3QCV TITLE CRYSTAL STRUCTURE OF THE LT3015 ANTIBODY FAB FRAGMENT IN COMPLEX WITH TITLE 2 LYSOPHOSPHATIDIC ACID (18:2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LT3015 ANTIBODY FAB FRAGMENT, HEAVY CHAIN; COMPND 3 CHAIN: H, I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LT3015 ANTIBODY FAB FRAGMENT, LIGHT CHAIN; COMPND 7 CHAIN: L, M; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKFZP686P15220; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: IGKC; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS ANTIBODY, LYSOPHOSPHATIDIC ACID BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.K.FLEMING,J.M.WOJCIAK,M.-A.CAMPBELL,T.HUXFORD REVDAT 5 13-SEP-23 3QCV 1 REMARK REVDAT 4 08-NOV-17 3QCV 1 REMARK REVDAT 3 26-JUL-17 3QCV 1 SOURCE REMARK REVDAT 2 27-APR-11 3QCV 1 JRNL REVDAT 1 30-MAR-11 3QCV 0 JRNL AUTH J.K.FLEMING,J.M.WOJCIAK,M.A.CAMPBELL,T.HUXFORD JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 LYSOPHOSPHATIDIC ACID BINDING BY A HUMANIZED MONOCLONAL JRNL TITL 3 ANTIBODY. JRNL REF J.MOL.BIOL. V. 408 462 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21392506 JRNL DOI 10.1016/J.JMB.2011.02.061 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.597 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6918 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9398 ; 1.272 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;36.606 ;24.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1088 ;15.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1034 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5218 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4340 ; 0.563 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7020 ; 1.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2578 ; 1.444 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2378 ; 2.529 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3QCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.966 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3QCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M SODIUM CITRATE PH 5.6, 19% REMARK 280 (V/V) ISOPROPANOL, 19% (W/V) PEG 4000, AND 5% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.74900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.74900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.56550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.56550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.74900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.49000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.56550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.74900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.49000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.56550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 LYS I 129 REMARK 465 SER I 130 REMARK 465 THR I 131 REMARK 465 SER I 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 101 54.02 -142.04 REMARK 500 SER H 127 -151.08 -163.55 REMARK 500 VAL L 51 -55.98 75.77 REMARK 500 ASP L 60 4.03 -67.82 REMARK 500 SER L 67 146.28 -177.42 REMARK 500 GLU L 143 109.89 -48.63 REMARK 500 ASN L 152 -1.09 73.30 REMARK 500 HIS L 198 149.03 -170.23 REMARK 500 ARG L 211 129.12 -36.38 REMARK 500 SER I 82B 79.44 56.63 REMARK 500 ASP I 101 57.67 -147.82 REMARK 500 SER I 127 -157.07 -100.28 REMARK 500 ASP I 144 75.14 53.29 REMARK 500 THR I 191 -94.82 -90.28 REMARK 500 GLN I 192 124.23 -36.18 REMARK 500 VAL M 51 -57.31 79.19 REMARK 500 ASP M 60 1.94 -64.73 REMARK 500 LYS M 126 -4.40 -51.97 REMARK 500 ASN M 138 75.52 50.22 REMARK 500 GLU M 143 119.13 -39.35 REMARK 500 ASP M 151 49.42 37.48 REMARK 500 ASN M 152 -7.08 75.72 REMARK 500 ARG M 211 120.32 -39.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 18L H 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 18L I 215 DBREF 3QCV H 1 109 PDB 3QCT 3QCT 1 118 DBREF 3QCV H 110 214 UNP Q6N089 Q6N089_HUMAN 139 243 DBREF 3QCV L 1 108 PDB 3QCT 3QCT 1 113 DBREF 3QCV L 109 213 UNP P01834 IGKC_HUMAN 1 105 DBREF 3QCV I 1 109 PDB 3QCT 3QCT 1 118 DBREF 3QCV I 110 214 UNP Q6N089 Q6N089_HUMAN 139 243 DBREF 3QCV M 1 108 PDB 3QCT 3QCT 1 113 DBREF 3QCV M 109 213 UNP P01834 IGKC_HUMAN 1 105 SEQRES 1 H 223 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY GLU SER LEU LYS ILE SER CYS GLN ALA PHE GLY SEQRES 3 H 223 TYR GLY PHE ILE ASN TYR LEU ILE GLU TRP ILE ARG GLN SEQRES 4 H 223 MET PRO GLY GLN GLY LEU GLU TRP ILE GLY LEU ILE ASN SEQRES 5 H 223 PRO GLY SER ASP TYR THR ASN TYR ASN GLU ASN PHE LYS SEQRES 6 H 223 GLY GLN ALA THR LEU SER ALA ASP LYS SER SER SER THR SEQRES 7 H 223 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 223 ALA MET TYR PHE CYS ALA ARG ARG PHE GLY TYR TYR GLY SEQRES 9 H 223 SER GLY ASN TYR PHE ASP TYR TRP GLY GLN GLY THR MET SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 L 218 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 THR PRO GLY GLU PRO ALA SER ILE SER CYS THR SER GLY SEQRES 3 L 218 GLN SER LEU VAL HIS ILE ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN LEU PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 218 PHE CYS SER GLN SER THR HIS PHE PRO PHE THR PHE GLY SEQRES 9 L 218 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 218 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 218 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 218 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 218 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 218 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 218 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 218 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 218 PRO VAL THR LYS SER PHE ASN ARG GLY GLU SEQRES 1 I 223 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 I 223 PRO GLY GLU SER LEU LYS ILE SER CYS GLN ALA PHE GLY SEQRES 3 I 223 TYR GLY PHE ILE ASN TYR LEU ILE GLU TRP ILE ARG GLN SEQRES 4 I 223 MET PRO GLY GLN GLY LEU GLU TRP ILE GLY LEU ILE ASN SEQRES 5 I 223 PRO GLY SER ASP TYR THR ASN TYR ASN GLU ASN PHE LYS SEQRES 6 I 223 GLY GLN ALA THR LEU SER ALA ASP LYS SER SER SER THR SEQRES 7 I 223 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 I 223 ALA MET TYR PHE CYS ALA ARG ARG PHE GLY TYR TYR GLY SEQRES 9 I 223 SER GLY ASN TYR PHE ASP TYR TRP GLY GLN GLY THR MET SEQRES 10 I 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 I 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 I 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 I 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 I 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 I 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 I 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 I 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 I 223 PRO LYS SEQRES 1 M 218 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 M 218 THR PRO GLY GLU PRO ALA SER ILE SER CYS THR SER GLY SEQRES 3 M 218 GLN SER LEU VAL HIS ILE ASN GLY ASN THR TYR LEU HIS SEQRES 4 M 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 M 218 ILE TYR LYS VAL SER ASN LEU PHE SER GLY VAL PRO ASP SEQRES 6 M 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 M 218 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 M 218 PHE CYS SER GLN SER THR HIS PHE PRO PHE THR PHE GLY SEQRES 9 M 218 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 M 218 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 M 218 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 M 218 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 M 218 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 M 218 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 M 218 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 M 218 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 M 218 PRO VAL THR LYS SER PHE ASN ARG GLY GLU HET 18L H 215 29 HET 18L I 215 29 HETNAM 18L (2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9Z,12Z)- HETNAM 2 18L OCTADECA-9,12-DIENOATE HETSYN 18L D (+)-SN-1-O-LINOLEOYL-GLYCERYL-3-PHOSPHATE FORMUL 5 18L 2(C21 H39 O7 P) FORMUL 7 HOH *97(H2 O) HELIX 1 1 GLY H 28 TYR H 32 5 5 HELIX 2 2 GLU H 61 LYS H 64 5 4 HELIX 3 3 LYS H 83 THR H 87 5 5 HELIX 4 4 SER H 156 ALA H 158 5 3 HELIX 5 5 SER H 187 THR H 191 5 5 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 GLU L 79 VAL L 83 5 5 HELIX 8 8 SER L 121 SER L 127 1 7 HELIX 9 9 LYS L 183 LYS L 188 1 6 HELIX 10 10 GLY I 28 TYR I 32 5 5 HELIX 11 11 GLU I 61 LYS I 64 5 4 HELIX 12 12 LYS I 83 THR I 87 5 5 HELIX 13 13 SER I 156 ALA I 158 5 3 HELIX 14 14 SER I 187 LEU I 189 5 3 HELIX 15 15 LYS I 201 ASN I 204 5 4 HELIX 16 16 GLU M 79 VAL M 83 5 5 HELIX 17 17 SER M 121 LYS M 126 1 6 HELIX 18 18 LYS M 183 GLU M 187 1 5 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 LEU H 18 PHE H 25 -1 O GLN H 23 N VAL H 5 SHEET 3 A 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 ALA H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 B 6 ALA H 88 PHE H 96 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 ILE H 34 GLN H 39 -1 N ILE H 37 O PHE H 91 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O ILE H 51 N ILE H 34 SHEET 6 B 6 THR H 57 TYR H 59 -1 O ASN H 58 N LEU H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 C 4 ALA H 88 PHE H 96 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 TYR H 100D TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 D 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 2 E 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 E 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 E 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 F 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 G 4 MET L 4 THR L 7 0 SHEET 2 G 4 ALA L 19 SER L 25 -1 O THR L 24 N THR L 5 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 G 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 H 6 SER L 10 VAL L 13 0 SHEET 2 H 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 H 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 H 6 LEU L 33 GLN L 38 -1 N HIS L 34 O SER L 89 SHEET 5 H 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 I 4 SER L 10 VAL L 13 0 SHEET 2 I 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 I 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 I 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 J 4 SER L 114 PHE L 118 0 SHEET 2 J 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 J 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 J 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 K 4 ALA L 153 LEU L 154 0 SHEET 2 K 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 K 4 VAL L 191 HIS L 198 -1 O THR L 197 N LYS L 145 SHEET 4 K 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 L 4 GLN I 3 GLN I 6 0 SHEET 2 L 4 LEU I 18 PHE I 25 -1 O GLN I 23 N VAL I 5 SHEET 3 L 4 THR I 77 TRP I 82 -1 O ALA I 78 N CYS I 22 SHEET 4 L 4 ALA I 67 ASP I 72 -1 N ASP I 72 O THR I 77 SHEET 1 M 6 GLU I 10 LYS I 12 0 SHEET 2 M 6 THR I 107 VAL I 111 1 O MET I 108 N GLU I 10 SHEET 3 M 6 ALA I 88 PHE I 96 -1 N TYR I 90 O THR I 107 SHEET 4 M 6 ILE I 34 GLN I 39 -1 N ILE I 37 O PHE I 91 SHEET 5 M 6 LEU I 45 ASN I 52 -1 O ILE I 48 N TRP I 36 SHEET 6 M 6 TYR I 56 TYR I 59 -1 O ASN I 58 N LEU I 50 SHEET 1 N 4 GLU I 10 LYS I 12 0 SHEET 2 N 4 THR I 107 VAL I 111 1 O MET I 108 N GLU I 10 SHEET 3 N 4 ALA I 88 PHE I 96 -1 N TYR I 90 O THR I 107 SHEET 4 N 4 TYR I 100D TRP I 103 -1 O TYR I 102 N ARG I 94 SHEET 1 O 4 SER I 120 LEU I 124 0 SHEET 2 O 4 THR I 135 TYR I 145 -1 O GLY I 139 N LEU I 124 SHEET 3 O 4 TYR I 176 PRO I 185 -1 O LEU I 178 N VAL I 142 SHEET 4 O 4 VAL I 163 THR I 165 -1 N HIS I 164 O VAL I 181 SHEET 1 P 4 SER I 120 LEU I 124 0 SHEET 2 P 4 THR I 135 TYR I 145 -1 O GLY I 139 N LEU I 124 SHEET 3 P 4 TYR I 176 PRO I 185 -1 O LEU I 178 N VAL I 142 SHEET 4 P 4 VAL I 169 LEU I 170 -1 N VAL I 169 O SER I 177 SHEET 1 Q 3 THR I 151 TRP I 154 0 SHEET 2 Q 3 TYR I 194 HIS I 200 -1 O ASN I 197 N SER I 153 SHEET 3 Q 3 THR I 205 VAL I 211 -1 O THR I 205 N HIS I 200 SHEET 1 R 4 MET M 4 THR M 7 0 SHEET 2 R 4 ALA M 19 SER M 25 -1 O THR M 24 N THR M 5 SHEET 3 R 4 ASP M 70 ILE M 75 -1 O LEU M 73 N ILE M 21 SHEET 4 R 4 PHE M 62 SER M 67 -1 N SER M 63 O LYS M 74 SHEET 1 S 6 SER M 10 VAL M 13 0 SHEET 2 S 6 THR M 102 ILE M 106 1 O LYS M 103 N LEU M 11 SHEET 3 S 6 GLY M 84 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 S 6 LEU M 33 GLN M 38 -1 N HIS M 34 O SER M 89 SHEET 5 S 6 PRO M 44 TYR M 49 -1 O ILE M 48 N TRP M 35 SHEET 6 S 6 ASN M 53 LEU M 54 -1 O ASN M 53 N TYR M 49 SHEET 1 T 4 SER M 10 VAL M 13 0 SHEET 2 T 4 THR M 102 ILE M 106 1 O LYS M 103 N LEU M 11 SHEET 3 T 4 GLY M 84 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 T 4 THR M 97 PHE M 98 -1 O THR M 97 N GLN M 90 SHEET 1 U 4 SER M 114 PHE M 118 0 SHEET 2 U 4 THR M 129 PHE M 139 -1 O VAL M 133 N PHE M 118 SHEET 3 U 4 TYR M 173 SER M 182 -1 O LEU M 181 N ALA M 130 SHEET 4 U 4 SER M 159 VAL M 163 -1 N GLN M 160 O THR M 178 SHEET 1 V 4 ALA M 153 LEU M 154 0 SHEET 2 V 4 LYS M 145 VAL M 150 -1 N VAL M 150 O ALA M 153 SHEET 3 V 4 VAL M 191 THR M 197 -1 O GLU M 195 N GLN M 147 SHEET 4 V 4 VAL M 205 ASN M 210 -1 O VAL M 205 N VAL M 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS I 22 CYS I 92 1555 1555 2.06 SSBOND 6 CYS I 140 CYS I 196 1555 1555 2.04 SSBOND 7 CYS M 23 CYS M 88 1555 1555 2.07 SSBOND 8 CYS M 134 CYS M 194 1555 1555 2.02 CISPEP 1 PHE H 146 PRO H 147 0 -6.49 CISPEP 2 GLU H 148 PRO H 149 0 -3.87 CISPEP 3 THR L 7 PRO L 8 0 -2.57 CISPEP 4 PHE L 94 PRO L 95 0 -0.89 CISPEP 5 TYR L 140 PRO L 141 0 -2.49 CISPEP 6 PHE I 146 PRO I 147 0 -3.50 CISPEP 7 GLU I 148 PRO I 149 0 -1.02 CISPEP 8 THR M 7 PRO M 8 0 -4.94 CISPEP 9 PHE M 94 PRO M 95 0 -5.41 CISPEP 10 TYR M 140 PRO M 141 0 2.73 SITE 1 AC1 17 LEU H 33 TYR H 56 PHE H 96 GLY H 97 SITE 2 AC1 17 TYR H 98 TYR H 99 GLY H 100 SER H 100A SITE 3 AC1 17 GLY H 100B ASN H 100C TYR H 100D HOH H 221 SITE 4 AC1 17 18L I 215 ASN L 30 TYR L 32 LYS L 50 SITE 5 AC1 17 SER L 91 SITE 1 AC2 20 18L H 215 LEU I 33 SER I 54 TYR I 56 SITE 2 AC2 20 PHE I 96 GLY I 97 TYR I 98 TYR I 99 SITE 3 AC2 20 GLY I 100 SER I 100A GLY I 100B ASN I 100C SITE 4 AC2 20 TYR I 100D HOH I 225 HOH I 240 ASN M 30 SITE 5 AC2 20 TYR M 32 LYS M 50 SER M 91 PHE M 94 CRYST1 86.980 183.131 127.498 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007843 0.00000