HEADER LIGASE 17-JAN-11 3QCZ TITLE CRYSTAL STRUCTURE OF BIFUNCTIONAL FOLYLPOLYGLUTAMATE TITLE 2 SYNTHASE/DIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND L-GLUTAMATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE SYNTHASE / FOLYLPOLYGLUTAMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.2.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: DEDC, YPO2769; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG7 KEYWDS CSGID, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, FOLC, DIHYDROFOLATE SYNTHETASE- KEYWDS 3 FOLYLPOLYGLUTAMATE SYNTHETASE, DHFS, AMPPNP, MN, L-GLU, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.MAKOWSKA-GRZYSKA,N.MALTSEVA,W.ANDERSON,A.JOACHIMIAK,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 13-SEP-23 3QCZ 1 REMARK SEQADV LINK REVDAT 2 01-MAY-13 3QCZ 1 AUTHOR JRNL VERSN REVDAT 1 02-FEB-11 3QCZ 0 JRNL AUTH B.NOCEK,M.MAKOWSKA-GRZYSKA,N.MALTSEVA,W.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF BIFUNCTIONAL FOLYLPOLYGLUTAMATE JRNL TITL 2 SYNTHASE/DIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND JRNL TITL 3 L-GLUTAMATE BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3204 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2103 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4357 ; 1.926 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5123 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 5.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;36.875 ;23.723 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;13.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3569 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 634 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2021 ; 1.240 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 828 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3221 ; 2.157 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1183 ; 3.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1135 ; 5.252 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0620 36.3343 -0.1969 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.1196 REMARK 3 T33: 0.1524 T12: 0.0032 REMARK 3 T13: -0.0613 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 1.3502 L22: 4.9401 REMARK 3 L33: 5.5789 L12: 0.1048 REMARK 3 L13: 1.5673 L23: -0.6583 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.3866 S13: 0.1039 REMARK 3 S21: -0.0907 S22: -0.0439 S23: -0.0042 REMARK 3 S31: -0.8027 S32: 0.1847 S33: 0.1043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5711 34.9547 16.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.2063 REMARK 3 T33: 0.1660 T12: 0.2825 REMARK 3 T13: 0.0401 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.4321 L22: 2.4980 REMARK 3 L33: 7.7744 L12: -1.3040 REMARK 3 L13: -0.5733 L23: 1.8941 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: -0.1365 S13: 0.0861 REMARK 3 S21: 0.2581 S22: 0.1153 S23: 0.3597 REMARK 3 S31: -1.0642 S32: -0.9183 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1482 18.9379 15.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.1698 REMARK 3 T33: 0.1729 T12: -0.0011 REMARK 3 T13: 0.0214 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.2725 L22: 0.2812 REMARK 3 L33: 1.0815 L12: 0.1064 REMARK 3 L13: 0.2196 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0509 S13: 0.0183 REMARK 3 S21: 0.0476 S22: 0.0553 S23: 0.0373 REMARK 3 S31: 0.0069 S32: -0.0569 S33: -0.0566 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1321 31.0545 5.7181 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1614 REMARK 3 T33: 0.1596 T12: 0.0376 REMARK 3 T13: -0.0524 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 0.9587 L22: 1.2102 REMARK 3 L33: 2.6881 L12: -0.8493 REMARK 3 L13: -0.3133 L23: 0.1398 REMARK 3 S TENSOR REMARK 3 S11: -0.1397 S12: 0.1555 S13: -0.1052 REMARK 3 S21: -0.1583 S22: 0.1957 S23: 0.1113 REMARK 3 S31: -0.4861 S32: -0.1411 S33: -0.0560 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0689 25.4370 17.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1956 REMARK 3 T33: 0.1951 T12: 0.0536 REMARK 3 T13: 0.0356 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: -0.2408 L22: 1.4168 REMARK 3 L33: 2.0189 L12: -0.1902 REMARK 3 L13: 0.2290 L23: 0.0626 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.0154 S13: -0.0003 REMARK 3 S21: 0.0497 S22: 0.0671 S23: 0.2049 REMARK 3 S31: -0.1886 S32: -0.3110 S33: -0.0473 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0818 23.5152 34.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.1487 REMARK 3 T33: 0.1228 T12: 0.0151 REMARK 3 T13: 0.0336 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.1314 L22: 1.5185 REMARK 3 L33: 0.6473 L12: 0.5535 REMARK 3 L13: 0.0893 L23: 0.5297 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: -0.0806 S13: 0.0409 REMARK 3 S21: 0.3307 S22: -0.0183 S23: -0.0367 REMARK 3 S31: 0.0220 S32: -0.0148 S33: -0.0775 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0271 9.4076 27.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.1305 REMARK 3 T33: 0.1397 T12: 0.0133 REMARK 3 T13: -0.0096 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.8824 L22: 1.1271 REMARK 3 L33: 1.3756 L12: 0.2516 REMARK 3 L13: -0.0473 L23: 0.3626 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -0.0051 S13: 0.0998 REMARK 3 S21: 0.2872 S22: 0.0449 S23: -0.0516 REMARK 3 S31: 0.2679 S32: 0.0144 S33: -0.0982 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3640 12.6614 15.6772 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1619 REMARK 3 T33: 0.2051 T12: 0.0269 REMARK 3 T13: 0.0252 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.8959 L22: 0.4498 REMARK 3 L33: 1.1784 L12: 0.8077 REMARK 3 L13: -1.0332 L23: -0.3617 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.0191 S13: -0.0759 REMARK 3 S21: -0.0417 S22: 0.1312 S23: -0.1037 REMARK 3 S31: 0.1889 S32: 0.1447 S33: -0.0649 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1861 22.1349 24.4419 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.2346 REMARK 3 T33: 0.1694 T12: 0.0123 REMARK 3 T13: -0.0239 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 2.5051 L22: 1.5681 REMARK 3 L33: 1.9270 L12: -1.7602 REMARK 3 L13: 0.8864 L23: 0.5170 REMARK 3 S TENSOR REMARK 3 S11: 0.1698 S12: -0.0383 S13: -0.0714 REMARK 3 S21: 0.0455 S22: 0.1396 S23: 0.0238 REMARK 3 S31: 0.1194 S32: 0.3162 S33: -0.3094 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 376 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6325 31.1667 18.2937 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.2078 REMARK 3 T33: 0.2034 T12: -0.0606 REMARK 3 T13: 0.0446 T23: -0.0713 REMARK 3 L TENSOR REMARK 3 L11: 1.0427 L22: 0.8610 REMARK 3 L33: 2.0089 L12: -0.3586 REMARK 3 L13: -0.7996 L23: 0.7234 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0755 S13: 0.1155 REMARK 3 S21: 0.0275 S22: 0.1510 S23: -0.2197 REMARK 3 S31: -0.2506 S32: 0.3138 S33: -0.1477 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 377 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0421 31.7564 10.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.1761 REMARK 3 T33: 0.2056 T12: -0.0778 REMARK 3 T13: 0.1009 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.4267 L22: 1.4290 REMARK 3 L33: 2.4811 L12: -0.8017 REMARK 3 L13: -0.2929 L23: 0.2386 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.0261 S13: 0.0599 REMARK 3 S21: -0.2405 S22: 0.0360 S23: -0.1458 REMARK 3 S31: -0.2110 S32: 0.3212 S33: -0.1353 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 418 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3602 26.8806 8.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.2313 REMARK 3 T33: 0.1713 T12: -0.0562 REMARK 3 T13: 0.0164 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.8228 L22: 1.2689 REMARK 3 L33: 2.1069 L12: 1.3360 REMARK 3 L13: 0.6744 L23: -0.9828 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: 0.3535 S13: 0.2059 REMARK 3 S21: 0.0033 S22: 0.2635 S23: 0.0373 REMARK 3 S31: -0.1180 S32: 0.0946 S33: -0.1064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3N2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.43050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.43050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 GLN A 26 REMARK 465 PRO A 27 REMARK 465 ILE A 28 REMARK 465 GLN A 232 REMARK 465 GLU A 233 REMARK 465 PRO A 234 REMARK 465 PHE A 235 REMARK 465 ASP A 236 REMARK 465 GLN A 237 REMARK 465 GLN A 238 REMARK 465 GLU A 239 REMARK 465 PRO A 240 REMARK 465 VAL A 241 REMARK 465 ASP A 242 REMARK 465 GLN A 243 REMARK 465 GLN A 244 REMARK 465 ILE A 245 REMARK 465 ASN A 334 REMARK 465 PRO A 335 REMARK 465 VAL A 336 REMARK 465 ASN A 337 REMARK 465 ALA A 338 REMARK 465 SER A 339 REMARK 465 LYS A 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 -44.48 -132.34 REMARK 500 PRO A 84 -166.76 -75.88 REMARK 500 ASP A 204 75.22 -104.27 REMARK 500 VAL A 225 -66.72 -121.70 REMARK 500 ASN A 264 48.17 -86.13 REMARK 500 HIS A 317 27.88 -143.38 REMARK 500 SER A 392 46.99 38.43 REMARK 500 HIS A 433 49.67 36.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 83 O REMARK 620 2 GLU A 146 OE2 85.6 REMARK 620 3 HOH A 436 O 85.6 91.8 REMARK 620 4 HOH A 437 O 86.9 79.7 169.0 REMARK 620 5 ANP A 501 O1G 101.5 165.6 101.2 88.1 REMARK 620 6 ANP A 501 O1B 171.8 87.4 90.4 96.1 86.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N2A RELATED DB: PDB REMARK 900 RELATED ID: IDP90784 RELATED DB: TARGETDB DBREF 3QCZ A 1 434 UNP Q0WDC2 Q0WDC2_YERPE 1 434 SEQADV 3QCZ SER A -2 UNP Q0WDC2 EXPRESSION TAG SEQADV 3QCZ ASN A -1 UNP Q0WDC2 EXPRESSION TAG SEQADV 3QCZ ALA A 0 UNP Q0WDC2 EXPRESSION TAG SEQRES 1 A 437 SER ASN ALA MET ASN ASN HIS GLN THR PRO GLN ALA THR SEQRES 2 A 437 SER PRO LEU ALA ALA TRP LEU CYS TYR LEU GLU HIS LEU SEQRES 3 A 437 HIS SER GLN PRO ILE GLU LEU GLY LEU GLU ARG VAL LYS SEQRES 4 A 437 GLN VAL ALA GLU ARG LEU ASP LEU LEU LYS PRO ALA PRO SEQRES 5 A 437 LYS ILE PHE THR VAL ALA GLY THR ASN GLY LYS GLY THR SEQRES 6 A 437 THR CYS CYS THR LEU GLU ALA ILE LEU LEU ALA ALA GLY SEQRES 7 A 437 LEU ARG VAL GLY VAL TYR SER SER PRO HIS LEU LEU ARG SEQRES 8 A 437 TYR THR GLU ARG VAL ARG ILE GLN GLY GLN GLU LEU SER SEQRES 9 A 437 GLU ALA GLU HIS SER HIS SER PHE ALA GLN ILE GLU ALA SEQRES 10 A 437 GLY ARG GLY ASP ILE SER LEU THR TYR PHE GLU PHE GLY SEQRES 11 A 437 THR LEU SER ALA LEU GLN LEU PHE LYS GLN ALA LYS LEU SEQRES 12 A 437 ASP VAL VAL ILE LEU GLU VAL GLY LEU GLY GLY ARG LEU SEQRES 13 A 437 ASP ALA THR ASN ILE VAL ASP SER ASP VAL ALA ALA ILE SEQRES 14 A 437 THR SER ILE ALA LEU ASP HIS THR ASP TRP LEU GLY TYR SEQRES 15 A 437 ASP ARG GLU SER ILE GLY ARG GLU LYS ALA GLY VAL PHE SEQRES 16 A 437 ARG GLY GLY LYS PRO ALA VAL VAL GLY GLU PRO ASP MET SEQRES 17 A 437 PRO GLN SER ILE ALA ASP VAL ALA ALA GLU LEU GLY ALA SEQRES 18 A 437 GLN LEU TYR ARG ARG ASP VAL ALA TRP LYS PHE SER GLN SEQRES 19 A 437 GLN GLU PRO PHE ASP GLN GLN GLU PRO VAL ASP GLN GLN SEQRES 20 A 437 ILE ASN GLY TRP HIS TRP GLN CYS GLY GLU ARG GLN LEU SEQRES 21 A 437 THR GLY LEU PRO VAL PRO ASN VAL PRO LEU ALA ASN ALA SEQRES 22 A 437 ALA THR ALA LEU ALA VAL LEU HIS TYR SER GLU LEU PRO SEQRES 23 A 437 LEU SER ASP GLU ALA ILE ARG GLN GLY LEU GLN ALA ALA SEQRES 24 A 437 SER LEU PRO GLY ARG PHE GLN VAL VAL SER GLU GLN PRO SEQRES 25 A 437 LEU LEU ILE LEU ASP VAL ALA HIS ASN PRO HIS ALA ALA SEQRES 26 A 437 ARG TYR LEU VAL ASN ARG LEU ALA GLN VAL ILE ASN PRO SEQRES 27 A 437 VAL ASN ALA SER LYS GLN GLY LYS VAL ARG ALA VAL VAL SEQRES 28 A 437 GLY MET LEU SER ASP LYS ASP ILE ALA GLY THR LEU ALA SEQRES 29 A 437 CYS LEU SER GLU ARG VAL ASP GLU TRP TYR CYS ALA PRO SEQRES 30 A 437 LEU GLU GLY PRO ARG GLY ALA SER ALA GLY GLN LEU ALA SEQRES 31 A 437 GLU HIS LEU VAL SER ALA ARG GLN PHE SER ASP VAL GLU SEQRES 32 A 437 THR ALA TRP ARG GLN ALA MET GLN ASP ALA ASP THR GLN SEQRES 33 A 437 ASP VAL VAL ILE VAL CYS GLY SER PHE HIS THR VAL ALA SEQRES 34 A 437 HIS VAL MET ALA ALA LEU HIS LEU HET ANP A 501 31 HET MN A 601 1 HET GOL A 435 6 HET GOL A 602 6 HET GLU A 701 10 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM GLU GLUTAMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MN MN 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 GLU C5 H9 N O4 FORMUL 7 HOH *205(H2 O) HELIX 1 1 PRO A 12 HIS A 22 1 11 HELIX 2 2 LEU A 32 LEU A 42 1 11 HELIX 3 3 GLY A 59 ALA A 74 1 16 HELIX 4 4 ARG A 88 GLU A 91 5 4 HELIX 5 5 SER A 101 ARG A 116 1 16 HELIX 6 6 THR A 122 ALA A 138 1 17 HELIX 7 7 ASP A 154 VAL A 159 5 6 HELIX 8 8 ASP A 180 GLY A 190 1 11 HELIX 9 9 PRO A 206 GLY A 217 1 12 HELIX 10 10 PRO A 266 GLU A 281 1 16 HELIX 11 11 SER A 285 ALA A 296 1 12 HELIX 12 12 ASN A 318 GLN A 331 1 14 HELIX 13 13 ASP A 355 SER A 364 1 10 HELIX 14 14 SER A 382 GLU A 388 1 7 HELIX 15 15 ASP A 398 ALA A 410 1 13 HELIX 16 16 SER A 421 LEU A 432 1 12 SHEET 1 A 8 GLN A 98 GLU A 99 0 SHEET 2 A 8 VAL A 93 ILE A 95 -1 N ILE A 95 O GLN A 98 SHEET 3 A 8 VAL A 78 TYR A 81 -1 N VAL A 80 O ARG A 94 SHEET 4 A 8 VAL A 142 GLU A 146 1 O ILE A 144 N GLY A 79 SHEET 5 A 8 LYS A 50 ALA A 55 1 N PHE A 52 O LEU A 145 SHEET 6 A 8 VAL A 163 ILE A 166 1 O ALA A 165 N ALA A 55 SHEET 7 A 8 PRO A 197 VAL A 200 1 O VAL A 199 N ALA A 164 SHEET 8 A 8 GLN A 219 ARG A 222 1 O TYR A 221 N ALA A 198 SHEET 1 B 3 TRP A 227 SER A 230 0 SHEET 2 B 3 TRP A 248 CYS A 252 -1 O GLN A 251 N LYS A 228 SHEET 3 B 3 ARG A 255 LEU A 260 -1 O LEU A 260 N TRP A 248 SHEET 1 C 6 GLN A 303 SER A 306 0 SHEET 2 C 6 LEU A 310 LEU A 313 -1 O LEU A 311 N VAL A 305 SHEET 3 C 6 VAL A 415 CYS A 419 1 O VAL A 416 N LEU A 310 SHEET 4 C 6 VAL A 344 VAL A 348 1 N ARG A 345 O VAL A 415 SHEET 5 C 6 GLU A 369 CYS A 372 1 O GLU A 369 N ALA A 346 SHEET 6 C 6 ARG A 394 GLN A 395 1 O ARG A 394 N CYS A 372 LINK O SER A 83 MN MN A 601 1555 1555 2.15 LINK OE2 GLU A 146 MN MN A 601 1555 1555 1.98 LINK O HOH A 436 MN MN A 601 1555 1555 2.28 LINK O HOH A 437 MN MN A 601 1555 1555 2.31 LINK O1G ANP A 501 MN MN A 601 1555 1555 1.97 LINK O1B ANP A 501 MN MN A 601 1555 1555 2.06 CISPEP 1 SER A 83 PRO A 84 0 -9.87 CISPEP 2 GLN A 308 PRO A 309 0 8.44 SITE 1 AC1 25 THR A 57 ASN A 58 GLY A 59 LYS A 60 SITE 2 AC1 25 GLY A 61 THR A 62 SER A 83 PRO A 84 SITE 3 AC1 25 GLU A 146 ASN A 269 ARG A 301 ASP A 314 SITE 4 AC1 25 VAL A 315 ALA A 316 HIS A 317 HIS A 320 SITE 5 AC1 25 ALA A 321 TYR A 324 PHE A 422 HOH A 436 SITE 6 AC1 25 HOH A 437 HOH A 458 HOH A 531 HOH A 596 SITE 7 AC1 25 MN A 601 SITE 1 AC2 5 SER A 83 GLU A 146 HOH A 436 HOH A 437 SITE 2 AC2 5 ANP A 501 SITE 1 AC3 3 TYR A 179 ARG A 255 GLN A 256 SITE 1 AC4 1 ARG A 323 SITE 1 AC5 10 THR A 57 LEU A 149 GLY A 150 ALA A 170 SITE 2 AC5 10 LEU A 171 ASP A 172 HIS A 173 TYR A 179 SITE 3 AC5 10 LYS A 188 HOH A 465 CRYST1 62.861 83.237 126.990 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007875 0.00000