data_3QD1 # _entry.id 3QD1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QD1 RCSB RCSB063490 WWPDB D_1000063490 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-12-26 _pdbx_database_PDB_obs_spr.pdb_id 4I8E _pdbx_database_PDB_obs_spr.replace_pdb_id 3QD1 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QC5 . unspecified PDB 3QC6 . unspecified # _pdbx_database_status.entry_id 3QD1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-17 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pyburn, T.M.' 1 'Iverson, T.M.' 2 # _citation.id primary _citation.title 'A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors.' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 7 _citation.page_first e1002112 _citation.page_last e1002112 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21765814 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1002112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pyburn, T.M.' 1 primary 'Bensing, B.A.' 2 primary 'Xiong, Y.Q.' 3 primary 'Melancon, B.J.' 4 primary 'Tomasiak, T.M.' 5 primary 'Ward, N.J.' 6 primary 'Yankovskaya, V.' 7 primary 'Oliver, K.M.' 8 primary 'Cecchini, G.' 9 primary 'Sulikowski, G.A.' 10 primary 'Tyska, M.J.' 11 primary 'Sullam, P.M.' 12 primary 'Iverson, T.M.' 13 # _cell.entry_id 3QD1 _cell.length_a 69.900 _cell.length_b 34.029 _cell.length_c 83.394 _cell.angle_alpha 90.00 _cell.angle_beta 99.16 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QD1 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Platelet binding protein GspB' 39409.594 1 ? N444S ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 4 non-polymer syn 'ethyl 3-O-[5-(acetylamino)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl]-1-thio-beta-D-galactopyranoside' 515.529 1 ? ? ? ? 5 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 8 water nat water 18.015 213 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RAVTESAPNVEYHDVKGDMIQSVTTSFDDTSRLLTWTINLTPRQVKSNLGALVSISGNQETRTVTINGKNAANGGVYNSG GAWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEFSQVAATTNGSWDKAGYNTTIVEKDTERPV VNVPSEITVYRGESFEYFATVTDNSNAFDLAKTVVRWLYSNQPGRGTEWLQYSVTQVGNQLKVRIFGNVPIDTTIGDYTR YVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFRIKTPENTVFVNNPNQLTEVEKNLVREAVKKSNPDLRAQDVL NSNYVTGITVSNNGTTTITYRDGRKDIIDGSKFIDTRAG ; _entity_poly.pdbx_seq_one_letter_code_can ;RAVTESAPNVEYHDVKGDMIQSVTTSFDDTSRLLTWTINLTPRQVKSNLGALVSISGNQETRTVTINGKNAANGGVYNSG GAWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEFSQVAATTNGSWDKAGYNTTIVEKDTERPV VNVPSEITVYRGESFEYFATVTDNSNAFDLAKTVVRWLYSNQPGRGTEWLQYSVTQVGNQLKVRIFGNVPIDTTIGDYTR YVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFRIKTPENTVFVNNPNQLTEVEKNLVREAVKKSNPDLRAQDVL NSNYVTGITVSNNGTTTITYRDGRKDIIDGSKFIDTRAG ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ALA n 1 3 VAL n 1 4 THR n 1 5 GLU n 1 6 SER n 1 7 ALA n 1 8 PRO n 1 9 ASN n 1 10 VAL n 1 11 GLU n 1 12 TYR n 1 13 HIS n 1 14 ASP n 1 15 VAL n 1 16 LYS n 1 17 GLY n 1 18 ASP n 1 19 MET n 1 20 ILE n 1 21 GLN n 1 22 SER n 1 23 VAL n 1 24 THR n 1 25 THR n 1 26 SER n 1 27 PHE n 1 28 ASP n 1 29 ASP n 1 30 THR n 1 31 SER n 1 32 ARG n 1 33 LEU n 1 34 LEU n 1 35 THR n 1 36 TRP n 1 37 THR n 1 38 ILE n 1 39 ASN n 1 40 LEU n 1 41 THR n 1 42 PRO n 1 43 ARG n 1 44 GLN n 1 45 VAL n 1 46 LYS n 1 47 SER n 1 48 ASN n 1 49 LEU n 1 50 GLY n 1 51 ALA n 1 52 LEU n 1 53 VAL n 1 54 SER n 1 55 ILE n 1 56 SER n 1 57 GLY n 1 58 ASN n 1 59 GLN n 1 60 GLU n 1 61 THR n 1 62 ARG n 1 63 THR n 1 64 VAL n 1 65 THR n 1 66 ILE n 1 67 ASN n 1 68 GLY n 1 69 LYS n 1 70 ASN n 1 71 ALA n 1 72 ALA n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 VAL n 1 77 TYR n 1 78 ASN n 1 79 SER n 1 80 GLY n 1 81 GLY n 1 82 ALA n 1 83 TRP n 1 84 ASN n 1 85 LEU n 1 86 TYR n 1 87 THR n 1 88 GLY n 1 89 GLU n 1 90 SER n 1 91 VAL n 1 92 ASN n 1 93 ASN n 1 94 ASN n 1 95 VAL n 1 96 LEU n 1 97 ARG n 1 98 ILE n 1 99 THR n 1 100 THR n 1 101 GLN n 1 102 VAL n 1 103 ASN n 1 104 ASP n 1 105 THR n 1 106 GLY n 1 107 GLY n 1 108 GLU n 1 109 VAL n 1 110 LYS n 1 111 LEU n 1 112 GLY n 1 113 LEU n 1 114 ARG n 1 115 LEU n 1 116 VAL n 1 117 THR n 1 118 SER n 1 119 ASP n 1 120 LYS n 1 121 LYS n 1 122 ILE n 1 123 THR n 1 124 LYS n 1 125 THR n 1 126 ASN n 1 127 LEU n 1 128 PRO n 1 129 LEU n 1 130 GLU n 1 131 PHE n 1 132 SER n 1 133 GLN n 1 134 VAL n 1 135 ALA n 1 136 ALA n 1 137 THR n 1 138 THR n 1 139 ASN n 1 140 GLY n 1 141 SER n 1 142 TRP n 1 143 ASP n 1 144 LYS n 1 145 ALA n 1 146 GLY n 1 147 TYR n 1 148 ASN n 1 149 THR n 1 150 THR n 1 151 ILE n 1 152 VAL n 1 153 GLU n 1 154 LYS n 1 155 ASP n 1 156 THR n 1 157 GLU n 1 158 ARG n 1 159 PRO n 1 160 VAL n 1 161 VAL n 1 162 ASN n 1 163 VAL n 1 164 PRO n 1 165 SER n 1 166 GLU n 1 167 ILE n 1 168 THR n 1 169 VAL n 1 170 TYR n 1 171 ARG n 1 172 GLY n 1 173 GLU n 1 174 SER n 1 175 PHE n 1 176 GLU n 1 177 TYR n 1 178 PHE n 1 179 ALA n 1 180 THR n 1 181 VAL n 1 182 THR n 1 183 ASP n 1 184 ASN n 1 185 SER n 1 186 ASN n 1 187 ALA n 1 188 PHE n 1 189 ASP n 1 190 LEU n 1 191 ALA n 1 192 LYS n 1 193 THR n 1 194 VAL n 1 195 VAL n 1 196 ARG n 1 197 TRP n 1 198 LEU n 1 199 TYR n 1 200 SER n 1 201 ASN n 1 202 GLN n 1 203 PRO n 1 204 GLY n 1 205 ARG n 1 206 GLY n 1 207 THR n 1 208 GLU n 1 209 TRP n 1 210 LEU n 1 211 GLN n 1 212 TYR n 1 213 SER n 1 214 VAL n 1 215 THR n 1 216 GLN n 1 217 VAL n 1 218 GLY n 1 219 ASN n 1 220 GLN n 1 221 LEU n 1 222 LYS n 1 223 VAL n 1 224 ARG n 1 225 ILE n 1 226 PHE n 1 227 GLY n 1 228 ASN n 1 229 VAL n 1 230 PRO n 1 231 ILE n 1 232 ASP n 1 233 THR n 1 234 THR n 1 235 ILE n 1 236 GLY n 1 237 ASP n 1 238 TYR n 1 239 THR n 1 240 ARG n 1 241 TYR n 1 242 VAL n 1 243 VAL n 1 244 ALA n 1 245 THR n 1 246 ASP n 1 247 ALA n 1 248 ALA n 1 249 GLY n 1 250 ASN n 1 251 VAL n 1 252 ASN n 1 253 ALA n 1 254 THR n 1 255 GLN n 1 256 THR n 1 257 GLU n 1 258 MET n 1 259 GLY n 1 260 ASN n 1 261 ALA n 1 262 ALA n 1 263 VAL n 1 264 ASP n 1 265 LYS n 1 266 THR n 1 267 SER n 1 268 VAL n 1 269 ASN n 1 270 GLY n 1 271 GLN n 1 272 PHE n 1 273 LYS n 1 274 LEU n 1 275 ILE n 1 276 ILE n 1 277 ARG n 1 278 PHE n 1 279 ARG n 1 280 ILE n 1 281 LYS n 1 282 THR n 1 283 PRO n 1 284 GLU n 1 285 ASN n 1 286 THR n 1 287 VAL n 1 288 PHE n 1 289 VAL n 1 290 ASN n 1 291 ASN n 1 292 PRO n 1 293 ASN n 1 294 GLN n 1 295 LEU n 1 296 THR n 1 297 GLU n 1 298 VAL n 1 299 GLU n 1 300 LYS n 1 301 ASN n 1 302 LEU n 1 303 VAL n 1 304 ARG n 1 305 GLU n 1 306 ALA n 1 307 VAL n 1 308 LYS n 1 309 LYS n 1 310 SER n 1 311 ASN n 1 312 PRO n 1 313 ASP n 1 314 LEU n 1 315 ARG n 1 316 ALA n 1 317 GLN n 1 318 ASP n 1 319 VAL n 1 320 LEU n 1 321 ASN n 1 322 SER n 1 323 ASN n 1 324 TYR n 1 325 VAL n 1 326 THR n 1 327 GLY n 1 328 ILE n 1 329 THR n 1 330 VAL n 1 331 SER n 1 332 ASN n 1 333 ASN n 1 334 GLY n 1 335 THR n 1 336 THR n 1 337 THR n 1 338 ILE n 1 339 THR n 1 340 TYR n 1 341 ARG n 1 342 ASP n 1 343 GLY n 1 344 ARG n 1 345 LYS n 1 346 ASP n 1 347 ILE n 1 348 ILE n 1 349 ASP n 1 350 GLY n 1 351 SER n 1 352 LYS n 1 353 PHE n 1 354 ILE n 1 355 ASP n 1 356 THR n 1 357 ARG n 1 358 ALA n 1 359 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gspB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus gordonii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1302 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-3X _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q939N5_STRGN _struct_ref.pdbx_db_accession Q939N5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RAVTESAPNVEYHDVKGDMIQSVTTSFDDTSRLLTWTINLTPRQVKSNLGALVSISGNQETRTVTINGKNAANGGVYNSG GAWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEFSQVAATTNGSWDKAGYNTTIVEKDTERPV VNVPSEITVYRGESFEYFATVTDNSNAFDLAKTVVRWLYNNQPGRGTEWLQYSVTQVGNQLKVRIFGNVPIDTTIGDYTR YVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFRIKTPENTVFVNNPNQLTEVEKNLVREAVKKSNPDLRAQDVL NSNYVTGITVSNNGTTTITYRDGRKDIIDGSKFIDTRAGS ; _struct_ref.pdbx_align_begin 245 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QD1 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 359 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q939N5 _struct_ref_seq.db_align_beg 245 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 603 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 245 _struct_ref_seq.pdbx_auth_seq_align_end 603 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3QD1 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 200 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q939N5 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 444 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 444 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RMY non-polymer . 'ethyl 3-O-[5-(acetylamino)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl]-1-thio-beta-D-galactopyranoside' 'alpha-2,3-sialyl (1-thioethyl)galactose' 'C19 H33 N O13 S' 515.529 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QD1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;6 mg/mL GspB in buffer containing 1 mM alpha-2,3-sialyl(1-thioethyl)galactose and 20 mM Tris, 8% PEG3350, 7.5mM CoCl2, 7.5mM NiCl2, 7.5mM CdCl2, 7.5mM MgCl2, 0.1M HEPES, VAPOR DIFFUSION, HANGING DROP, temperature 296.15K ; # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-04-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07806 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.07806 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3QD1 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 29986 _reflns.number_all ? _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.356 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3QD1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 28404 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.45 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.17976 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17794 _refine.ls_R_factor_R_free 0.21442 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1477 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.150 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 31.772 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'U VALUES : RESIDUAL ONLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.150 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.091 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.993 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2776 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 213 _refine_hist.number_atoms_total 3039 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 31.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 2879 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.301 1.952 ? 3937 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.242 5.000 ? 367 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.447 24.851 ? 134 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.746 15.000 ? 474 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.793 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 474 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 2165 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.635 1.500 ? 1779 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.195 2.000 ? 2914 'X-RAY DIFFRACTION' ? r_scbond_it 2.058 3.000 ? 1100 'X-RAY DIFFRACTION' ? r_scangle_it 3.458 4.500 ? 1016 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1987 _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3QD1 _struct.title 'GspB plus alpha-2,3-sialyl (1-thioethyl)galactose' _struct.pdbx_descriptor 'Platelet binding protein GspB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QD1 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Carbohydrate, antigen, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 8 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 0 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 130 ? VAL A 134 ? GLU X 374 VAL X 378 5 ? 5 HELX_P HELX_P2 2 ASP A 189 ? THR A 193 ? ASP X 433 THR X 437 5 ? 5 HELX_P HELX_P3 3 THR A 254 ? LYS A 265 ? THR X 498 LYS X 509 1 ? 12 HELX_P HELX_P4 4 THR A 296 ? ASN A 311 ? THR X 540 ASN X 555 1 ? 16 HELX_P HELX_P5 5 ARG A 315 ? SER A 322 ? ARG X 559 SER X 566 5 ? 8 HELX_P HELX_P6 6 ASN A 323 ? GLY A 327 ? ASN X 567 GLY X 571 1 ? 5 HELX_P HELX_P7 7 ASP A 349 ? LYS A 352 ? ASP X 593 LYS X 596 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 13 NE2 ? ? ? 1_555 F NI . NI ? ? X HIS 257 X NI 607 1_555 ? ? ? ? ? ? ? 2.088 ? metalc2 metalc ? ? F NI . NI ? ? ? 1_555 I HOH . O ? ? X NI 607 X HOH 39 1_555 ? ? ? ? ? ? ? 2.092 ? metalc3 metalc ? ? F NI . NI ? ? ? 1_555 I HOH . O ? ? X NI 607 X HOH 5 1_555 ? ? ? ? ? ? ? 2.178 ? metalc4 metalc ? ? F NI . NI ? ? ? 1_555 I HOH . O ? ? X NI 607 X HOH 27 1_555 ? ? ? ? ? ? ? 2.211 ? metalc5 metalc ? ? A GLU 157 O ? ? ? 1_555 D CD . CD ? ? X GLU 401 X CD 604 1_555 ? ? ? ? ? ? ? 2.320 ? metalc6 metalc ? ? A ASP 183 OD2 ? ? ? 1_555 D CD . CD ? ? X ASP 427 X CD 604 1_555 ? ? ? ? ? ? ? 2.328 ? metalc7 metalc ? ? A ASP 155 OD2 ? ? ? 1_555 D CD . CD ? ? X ASP 399 X CD 604 1_555 ? ? ? ? ? ? ? 2.360 ? metalc8 metalc ? ? A ASN 184 OD1 ? ? ? 1_555 D CD . CD ? ? X ASN 428 X CD 604 1_555 ? ? ? ? ? ? ? 2.371 ? metalc9 metalc ? ? A ASP 246 OD2 ? ? ? 1_555 D CD . CD ? ? X ASP 490 X CD 604 1_555 ? ? ? ? ? ? ? 2.429 ? metalc10 metalc ? ? A ASP 183 OD1 ? ? ? 1_555 D CD . CD ? ? X ASP 427 X CD 604 1_555 ? ? ? ? ? ? ? 2.458 ? metalc11 metalc ? ? A ASP 155 OD1 ? ? ? 1_555 D CD . CD ? ? X ASP 399 X CD 604 1_555 ? ? ? ? ? ? ? 2.502 ? metalc12 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 609 X HOH 11 1_555 ? ? ? ? ? ? ? 2.701 ? metalc13 metalc ? ? A ASN 219 O ? ? ? 1_555 G NA . NA ? ? X ASN 463 X NA 608 1_555 ? ? ? ? ? ? ? 2.755 ? metalc14 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? X MG 609 X HOH 9 1_555 ? ? ? ? ? ? ? 2.757 ? metalc15 metalc ? ? A ASP 183 O ? ? ? 1_555 G NA . NA ? ? X ASP 427 X NA 608 1_555 ? ? ? ? ? ? ? 2.998 ? metalc16 metalc ? ? A ASN 186 OD1 ? ? ? 1_555 G NA . NA ? ? X ASN 430 X NA 608 1_555 ? ? ? ? ? ? ? 3.027 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 78 A . ? ASN 322 X SER 79 A ? SER 323 X 1 -8.57 2 SER 79 A . ? SER 323 X GLY 80 A ? GLY 324 X 1 -29.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 2 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? SER A 6 ? VAL X 247 SER X 250 A 2 ILE A 20 ? ASP A 28 ? ILE X 264 ASP X 272 A 3 LEU A 33 ? LEU A 40 ? LEU X 277 LEU X 284 A 4 ASN A 94 ? VAL A 102 ? ASN X 338 VAL X 346 A 5 GLN A 59 ? ILE A 66 ? GLN X 303 ILE X 310 A 6 LYS A 69 ? ASN A 70 ? LYS X 313 ASN X 314 B 1 ASN A 9 ? HIS A 13 ? ASN X 253 HIS X 257 B 2 TRP A 142 ? ILE A 151 ? TRP X 386 ILE X 395 B 3 GLY A 107 ? SER A 118 ? GLY X 351 SER X 362 B 4 ASN A 48 ? ILE A 55 ? ASN X 292 ILE X 299 B 5 TRP A 83 ? GLU A 89 ? TRP X 327 GLU X 333 B 6 ALA A 72 ? VAL A 76 ? ALA X 316 VAL X 320 C 1 VAL A 160 ? ASN A 162 ? VAL X 404 ASN X 406 C 2 SER A 174 ? THR A 182 ? SER X 418 THR X 426 C 3 GLN A 220 ? ASN A 228 ? GLN X 464 ASN X 472 C 4 GLN A 211 ? VAL A 217 ? GLN X 455 VAL X 461 D 1 GLU A 166 ? TYR A 170 ? GLU X 410 TYR X 414 D 2 GLN A 271 ? ARG A 277 ? GLN X 515 ARG X 521 D 3 GLY A 236 ? VAL A 243 ? GLY X 480 VAL X 487 D 4 VAL A 194 ? ARG A 196 ? VAL X 438 ARG X 440 E 1 VAL A 287 ? VAL A 289 ? VAL X 531 VAL X 533 E 2 ILE A 354 ? THR A 356 ? ILE X 598 THR X 600 F 1 ILE A 328 ? VAL A 330 ? ILE X 572 VAL X 574 F 2 THR A 336 ? THR A 339 ? THR X 580 THR X 583 F 3 LYS A 345 ? ILE A 348 ? LYS X 589 ILE X 592 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 6 ? N SER X 250 O THR A 25 ? O THR X 269 A 2 3 N GLN A 21 ? N GLN X 265 O ASN A 39 ? O ASN X 283 A 3 4 N ILE A 38 ? N ILE X 282 O LEU A 96 ? O LEU X 340 A 4 5 O THR A 99 ? O THR X 343 N ARG A 62 ? N ARG X 306 A 5 6 N ILE A 66 ? N ILE X 310 O LYS A 69 ? O LYS X 313 B 1 2 N TYR A 12 ? N TYR X 256 O GLY A 146 ? O GLY X 390 B 2 3 O THR A 149 ? O THR X 393 N VAL A 109 ? N VAL X 353 B 3 4 O SER A 118 ? O SER X 362 N ASN A 48 ? N ASN X 292 B 4 5 N ALA A 51 ? N ALA X 295 O TYR A 86 ? O TYR X 330 B 5 6 O LEU A 85 ? O LEU X 329 N GLY A 74 ? N GLY X 318 C 1 2 N ASN A 162 ? N ASN X 406 O THR A 180 ? O THR X 424 C 2 3 N TYR A 177 ? N TYR X 421 O ILE A 225 ? O ILE X 469 C 3 4 O LYS A 222 ? O LYS X 466 N THR A 215 ? N THR X 459 D 1 2 N VAL A 169 ? N VAL X 413 O ILE A 275 ? O ILE X 519 D 2 3 O LEU A 274 ? O LEU X 518 N TYR A 238 ? N TYR X 482 D 3 4 O TYR A 241 ? O TYR X 485 N ARG A 196 ? N ARG X 440 E 1 2 N VAL A 287 ? N VAL X 531 O ASP A 355 ? O ASP X 599 F 1 2 N THR A 329 ? N THR X 573 O THR A 337 ? O THR X 581 F 2 3 N THR A 336 ? N THR X 580 O ILE A 348 ? O ILE X 592 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL X 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL X 605' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CD X 604' AC4 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE RMY X 606' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NI X 607' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA X 608' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG X 609' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH I . ? HOH X 144 . ? 1_555 ? 2 AC1 7 HOH I . ? HOH X 145 . ? 1_555 ? 3 AC1 7 HOH I . ? HOH X 166 . ? 1_555 ? 4 AC1 7 ASP A 18 ? ASP X 262 . ? 1_555 ? 5 AC1 7 MET A 19 ? MET X 263 . ? 1_555 ? 6 AC1 7 ILE A 20 ? ILE X 264 . ? 1_555 ? 7 AC1 7 THR A 41 ? THR X 285 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH X 138 . ? 1_555 ? 9 AC2 6 ALA A 261 ? ALA X 505 . ? 1_555 ? 10 AC2 6 LYS A 265 ? LYS X 509 . ? 1_555 ? 11 AC2 6 THR A 266 ? THR X 510 . ? 1_555 ? 12 AC2 6 SER A 267 ? SER X 511 . ? 1_555 ? 13 AC2 6 GLN A 271 ? GLN X 515 . ? 1_555 ? 14 AC3 5 ASP A 155 ? ASP X 399 . ? 1_555 ? 15 AC3 5 GLU A 157 ? GLU X 401 . ? 1_555 ? 16 AC3 5 ASP A 183 ? ASP X 427 . ? 1_555 ? 17 AC3 5 ASN A 184 ? ASN X 428 . ? 1_555 ? 18 AC3 5 ASP A 246 ? ASP X 490 . ? 1_555 ? 19 AC4 15 HOH I . ? HOH X 197 . ? 1_555 ? 20 AC4 15 HOH I . ? HOH X 199 . ? 1_555 ? 21 AC4 15 HOH I . ? HOH X 201 . ? 1_555 ? 22 AC4 15 HOH I . ? HOH X 202 . ? 1_555 ? 23 AC4 15 HOH I . ? HOH X 213 . ? 1_555 ? 24 AC4 15 TRP A 197 ? TRP X 441 . ? 1_555 ? 25 AC4 15 LEU A 198 ? LEU X 442 . ? 1_555 ? 26 AC4 15 TYR A 199 ? TYR X 443 . ? 1_555 ? 27 AC4 15 ARG A 205 ? ARG X 449 . ? 1_555 ? 28 AC4 15 ASP A 237 ? ASP X 481 . ? 1_555 ? 29 AC4 15 TYR A 238 ? TYR X 482 . ? 1_555 ? 30 AC4 15 THR A 239 ? THR X 483 . ? 1_555 ? 31 AC4 15 ARG A 240 ? ARG X 484 . ? 1_555 ? 32 AC4 15 ALA A 262 ? ALA X 506 . ? 1_555 ? 33 AC4 15 VAL A 263 ? VAL X 507 . ? 1_555 ? 34 AC5 4 HOH I . ? HOH X 5 . ? 1_555 ? 35 AC5 4 HOH I . ? HOH X 27 . ? 1_555 ? 36 AC5 4 HOH I . ? HOH X 39 . ? 1_555 ? 37 AC5 4 HIS A 13 ? HIS X 257 . ? 1_555 ? 38 AC6 4 THR A 182 ? THR X 426 . ? 1_555 ? 39 AC6 4 ASP A 183 ? ASP X 427 . ? 1_555 ? 40 AC6 4 ASN A 186 ? ASN X 430 . ? 1_555 ? 41 AC6 4 ASN A 219 ? ASN X 463 . ? 1_555 ? 42 AC7 5 HOH I . ? HOH X 9 . ? 1_555 ? 43 AC7 5 HOH I . ? HOH X 11 . ? 1_555 ? 44 AC7 5 VAL A 161 ? VAL X 405 . ? 1_555 ? 45 AC7 5 ASN A 162 ? ASN X 406 . ? 1_555 ? 46 AC7 5 VAL A 163 ? VAL X 407 . ? 1_555 ? # _atom_sites.entry_id 3QD1 _atom_sites.fract_transf_matrix[1][1] 0.014306 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002307 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029387 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012146 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD MG N NA NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 245 245 ARG ARG X . n A 1 2 ALA 2 246 246 ALA ALA X . n A 1 3 VAL 3 247 247 VAL VAL X . n A 1 4 THR 4 248 248 THR THR X . n A 1 5 GLU 5 249 249 GLU GLU X . n A 1 6 SER 6 250 250 SER SER X . n A 1 7 ALA 7 251 251 ALA ALA X . n A 1 8 PRO 8 252 252 PRO PRO X . n A 1 9 ASN 9 253 253 ASN ASN X . n A 1 10 VAL 10 254 254 VAL VAL X . n A 1 11 GLU 11 255 255 GLU GLU X . n A 1 12 TYR 12 256 256 TYR TYR X . n A 1 13 HIS 13 257 257 HIS HIS X . n A 1 14 ASP 14 258 258 ASP ASP X . n A 1 15 VAL 15 259 259 VAL VAL X . n A 1 16 LYS 16 260 260 LYS LYS X . n A 1 17 GLY 17 261 261 GLY GLY X . n A 1 18 ASP 18 262 262 ASP ASP X . n A 1 19 MET 19 263 263 MET MET X . n A 1 20 ILE 20 264 264 ILE ILE X . n A 1 21 GLN 21 265 265 GLN GLN X . n A 1 22 SER 22 266 266 SER SER X . n A 1 23 VAL 23 267 267 VAL VAL X . n A 1 24 THR 24 268 268 THR THR X . n A 1 25 THR 25 269 269 THR THR X . n A 1 26 SER 26 270 270 SER SER X . n A 1 27 PHE 27 271 271 PHE PHE X . n A 1 28 ASP 28 272 272 ASP ASP X . n A 1 29 ASP 29 273 273 ASP ASP X . n A 1 30 THR 30 274 274 THR THR X . n A 1 31 SER 31 275 275 SER SER X . n A 1 32 ARG 32 276 276 ARG ARG X . n A 1 33 LEU 33 277 277 LEU LEU X . n A 1 34 LEU 34 278 278 LEU LEU X . n A 1 35 THR 35 279 279 THR THR X . n A 1 36 TRP 36 280 280 TRP TRP X . n A 1 37 THR 37 281 281 THR THR X . n A 1 38 ILE 38 282 282 ILE ILE X . n A 1 39 ASN 39 283 283 ASN ASN X . n A 1 40 LEU 40 284 284 LEU LEU X . n A 1 41 THR 41 285 285 THR THR X . n A 1 42 PRO 42 286 286 PRO PRO X . n A 1 43 ARG 43 287 287 ARG ARG X . n A 1 44 GLN 44 288 288 GLN GLN X . n A 1 45 VAL 45 289 289 VAL VAL X . n A 1 46 LYS 46 290 290 LYS LYS X . n A 1 47 SER 47 291 291 SER SER X . n A 1 48 ASN 48 292 292 ASN ASN X . n A 1 49 LEU 49 293 293 LEU LEU X . n A 1 50 GLY 50 294 294 GLY GLY X . n A 1 51 ALA 51 295 295 ALA ALA X . n A 1 52 LEU 52 296 296 LEU LEU X . n A 1 53 VAL 53 297 297 VAL VAL X . n A 1 54 SER 54 298 298 SER SER X . n A 1 55 ILE 55 299 299 ILE ILE X . n A 1 56 SER 56 300 300 SER SER X . n A 1 57 GLY 57 301 301 GLY GLY X . n A 1 58 ASN 58 302 302 ASN ASN X . n A 1 59 GLN 59 303 303 GLN GLN X . n A 1 60 GLU 60 304 304 GLU GLU X . n A 1 61 THR 61 305 305 THR THR X . n A 1 62 ARG 62 306 306 ARG ARG X . n A 1 63 THR 63 307 307 THR THR X . n A 1 64 VAL 64 308 308 VAL VAL X . n A 1 65 THR 65 309 309 THR THR X . n A 1 66 ILE 66 310 310 ILE ILE X . n A 1 67 ASN 67 311 311 ASN ASN X . n A 1 68 GLY 68 312 312 GLY GLY X . n A 1 69 LYS 69 313 313 LYS LYS X . n A 1 70 ASN 70 314 314 ASN ASN X . n A 1 71 ALA 71 315 315 ALA ALA X . n A 1 72 ALA 72 316 316 ALA ALA X . n A 1 73 ASN 73 317 317 ASN ASN X . n A 1 74 GLY 74 318 318 GLY GLY X . n A 1 75 GLY 75 319 319 GLY GLY X . n A 1 76 VAL 76 320 320 VAL VAL X . n A 1 77 TYR 77 321 321 TYR TYR X . n A 1 78 ASN 78 322 322 ASN ASN X . n A 1 79 SER 79 323 323 SER SER X . n A 1 80 GLY 80 324 324 GLY GLY X . n A 1 81 GLY 81 325 325 GLY GLY X . n A 1 82 ALA 82 326 326 ALA ALA X . n A 1 83 TRP 83 327 327 TRP TRP X . n A 1 84 ASN 84 328 328 ASN ASN X . n A 1 85 LEU 85 329 329 LEU LEU X . n A 1 86 TYR 86 330 330 TYR TYR X . n A 1 87 THR 87 331 331 THR THR X . n A 1 88 GLY 88 332 332 GLY GLY X . n A 1 89 GLU 89 333 333 GLU GLU X . n A 1 90 SER 90 334 334 SER SER X . n A 1 91 VAL 91 335 335 VAL VAL X . n A 1 92 ASN 92 336 336 ASN ASN X . n A 1 93 ASN 93 337 337 ASN ASN X . n A 1 94 ASN 94 338 338 ASN ASN X . n A 1 95 VAL 95 339 339 VAL VAL X . n A 1 96 LEU 96 340 340 LEU LEU X . n A 1 97 ARG 97 341 341 ARG ARG X . n A 1 98 ILE 98 342 342 ILE ILE X . n A 1 99 THR 99 343 343 THR THR X . n A 1 100 THR 100 344 344 THR THR X . n A 1 101 GLN 101 345 345 GLN GLN X . n A 1 102 VAL 102 346 346 VAL VAL X . n A 1 103 ASN 103 347 347 ASN ASN X . n A 1 104 ASP 104 348 348 ASP ASP X . n A 1 105 THR 105 349 349 THR THR X . n A 1 106 GLY 106 350 350 GLY GLY X . n A 1 107 GLY 107 351 351 GLY GLY X . n A 1 108 GLU 108 352 352 GLU GLU X . n A 1 109 VAL 109 353 353 VAL VAL X . n A 1 110 LYS 110 354 354 LYS LYS X . n A 1 111 LEU 111 355 355 LEU LEU X . n A 1 112 GLY 112 356 356 GLY GLY X . n A 1 113 LEU 113 357 357 LEU LEU X . n A 1 114 ARG 114 358 358 ARG ARG X . n A 1 115 LEU 115 359 359 LEU LEU X . n A 1 116 VAL 116 360 360 VAL VAL X . n A 1 117 THR 117 361 361 THR THR X . n A 1 118 SER 118 362 362 SER SER X . n A 1 119 ASP 119 363 363 ASP ASP X . n A 1 120 LYS 120 364 364 LYS LYS X . n A 1 121 LYS 121 365 365 LYS LYS X . n A 1 122 ILE 122 366 366 ILE ILE X . n A 1 123 THR 123 367 367 THR THR X . n A 1 124 LYS 124 368 368 LYS LYS X . n A 1 125 THR 125 369 369 THR THR X . n A 1 126 ASN 126 370 370 ASN ASN X . n A 1 127 LEU 127 371 371 LEU LEU X . n A 1 128 PRO 128 372 372 PRO PRO X . n A 1 129 LEU 129 373 373 LEU LEU X . n A 1 130 GLU 130 374 374 GLU GLU X . n A 1 131 PHE 131 375 375 PHE PHE X . n A 1 132 SER 132 376 376 SER SER X . n A 1 133 GLN 133 377 377 GLN GLN X . n A 1 134 VAL 134 378 378 VAL VAL X . n A 1 135 ALA 135 379 379 ALA ALA X . n A 1 136 ALA 136 380 380 ALA ALA X . n A 1 137 THR 137 381 381 THR THR X . n A 1 138 THR 138 382 382 THR THR X . n A 1 139 ASN 139 383 383 ASN ASN X . n A 1 140 GLY 140 384 384 GLY GLY X . n A 1 141 SER 141 385 385 SER SER X . n A 1 142 TRP 142 386 386 TRP TRP X . n A 1 143 ASP 143 387 387 ASP ASP X . n A 1 144 LYS 144 388 388 LYS LYS X . n A 1 145 ALA 145 389 389 ALA ALA X . n A 1 146 GLY 146 390 390 GLY GLY X . n A 1 147 TYR 147 391 391 TYR TYR X . n A 1 148 ASN 148 392 392 ASN ASN X . n A 1 149 THR 149 393 393 THR THR X . n A 1 150 THR 150 394 394 THR THR X . n A 1 151 ILE 151 395 395 ILE ILE X . n A 1 152 VAL 152 396 396 VAL VAL X . n A 1 153 GLU 153 397 397 GLU GLU X . n A 1 154 LYS 154 398 398 LYS LYS X . n A 1 155 ASP 155 399 399 ASP ASP X . n A 1 156 THR 156 400 400 THR THR X . n A 1 157 GLU 157 401 401 GLU GLU X . n A 1 158 ARG 158 402 402 ARG ARG X . n A 1 159 PRO 159 403 403 PRO PRO X . n A 1 160 VAL 160 404 404 VAL VAL X . n A 1 161 VAL 161 405 405 VAL VAL X . n A 1 162 ASN 162 406 406 ASN ASN X . n A 1 163 VAL 163 407 407 VAL VAL X . n A 1 164 PRO 164 408 408 PRO PRO X . n A 1 165 SER 165 409 409 SER SER X . n A 1 166 GLU 166 410 410 GLU GLU X . n A 1 167 ILE 167 411 411 ILE ILE X . n A 1 168 THR 168 412 412 THR THR X . n A 1 169 VAL 169 413 413 VAL VAL X . n A 1 170 TYR 170 414 414 TYR TYR X . n A 1 171 ARG 171 415 415 ARG ARG X . n A 1 172 GLY 172 416 416 GLY GLY X . n A 1 173 GLU 173 417 417 GLU GLU X . n A 1 174 SER 174 418 418 SER SER X . n A 1 175 PHE 175 419 419 PHE PHE X . n A 1 176 GLU 176 420 420 GLU GLU X . n A 1 177 TYR 177 421 421 TYR TYR X . n A 1 178 PHE 178 422 422 PHE PHE X . n A 1 179 ALA 179 423 423 ALA ALA X . n A 1 180 THR 180 424 424 THR THR X . n A 1 181 VAL 181 425 425 VAL VAL X . n A 1 182 THR 182 426 426 THR THR X . n A 1 183 ASP 183 427 427 ASP ASP X . n A 1 184 ASN 184 428 428 ASN ASN X . n A 1 185 SER 185 429 429 SER SER X . n A 1 186 ASN 186 430 430 ASN ASN X . n A 1 187 ALA 187 431 431 ALA ALA X . n A 1 188 PHE 188 432 432 PHE PHE X . n A 1 189 ASP 189 433 433 ASP ASP X . n A 1 190 LEU 190 434 434 LEU LEU X . n A 1 191 ALA 191 435 435 ALA ALA X . n A 1 192 LYS 192 436 436 LYS LYS X . n A 1 193 THR 193 437 437 THR THR X . n A 1 194 VAL 194 438 438 VAL VAL X . n A 1 195 VAL 195 439 439 VAL VAL X . n A 1 196 ARG 196 440 440 ARG ARG X . n A 1 197 TRP 197 441 441 TRP TRP X . n A 1 198 LEU 198 442 442 LEU LEU X . n A 1 199 TYR 199 443 443 TYR TYR X . n A 1 200 SER 200 444 444 SER SER X . n A 1 201 ASN 201 445 445 ASN ASN X . n A 1 202 GLN 202 446 446 GLN GLN X . n A 1 203 PRO 203 447 447 PRO PRO X . n A 1 204 GLY 204 448 448 GLY GLY X . n A 1 205 ARG 205 449 449 ARG ARG X . n A 1 206 GLY 206 450 450 GLY GLY X . n A 1 207 THR 207 451 451 THR THR X . n A 1 208 GLU 208 452 452 GLU GLU X . n A 1 209 TRP 209 453 453 TRP TRP X . n A 1 210 LEU 210 454 454 LEU LEU X . n A 1 211 GLN 211 455 455 GLN GLN X . n A 1 212 TYR 212 456 456 TYR TYR X . n A 1 213 SER 213 457 457 SER SER X . n A 1 214 VAL 214 458 458 VAL VAL X . n A 1 215 THR 215 459 459 THR THR X . n A 1 216 GLN 216 460 460 GLN GLN X . n A 1 217 VAL 217 461 461 VAL VAL X . n A 1 218 GLY 218 462 462 GLY GLY X . n A 1 219 ASN 219 463 463 ASN ASN X . n A 1 220 GLN 220 464 464 GLN GLN X . n A 1 221 LEU 221 465 465 LEU LEU X . n A 1 222 LYS 222 466 466 LYS LYS X . n A 1 223 VAL 223 467 467 VAL VAL X . n A 1 224 ARG 224 468 468 ARG ARG X . n A 1 225 ILE 225 469 469 ILE ILE X . n A 1 226 PHE 226 470 470 PHE PHE X . n A 1 227 GLY 227 471 471 GLY GLY X . n A 1 228 ASN 228 472 472 ASN ASN X . n A 1 229 VAL 229 473 473 VAL VAL X . n A 1 230 PRO 230 474 474 PRO PRO X . n A 1 231 ILE 231 475 475 ILE ILE X . n A 1 232 ASP 232 476 476 ASP ASP X . n A 1 233 THR 233 477 477 THR THR X . n A 1 234 THR 234 478 478 THR THR X . n A 1 235 ILE 235 479 479 ILE ILE X . n A 1 236 GLY 236 480 480 GLY GLY X . n A 1 237 ASP 237 481 481 ASP ASP X . n A 1 238 TYR 238 482 482 TYR TYR X . n A 1 239 THR 239 483 483 THR THR X . n A 1 240 ARG 240 484 484 ARG ARG X . n A 1 241 TYR 241 485 485 TYR TYR X . n A 1 242 VAL 242 486 486 VAL VAL X . n A 1 243 VAL 243 487 487 VAL VAL X . n A 1 244 ALA 244 488 488 ALA ALA X . n A 1 245 THR 245 489 489 THR THR X . n A 1 246 ASP 246 490 490 ASP ASP X . n A 1 247 ALA 247 491 491 ALA ALA X . n A 1 248 ALA 248 492 492 ALA ALA X . n A 1 249 GLY 249 493 493 GLY GLY X . n A 1 250 ASN 250 494 494 ASN ASN X . n A 1 251 VAL 251 495 495 VAL VAL X . n A 1 252 ASN 252 496 496 ASN ASN X . n A 1 253 ALA 253 497 497 ALA ALA X . n A 1 254 THR 254 498 498 THR THR X . n A 1 255 GLN 255 499 499 GLN GLN X . n A 1 256 THR 256 500 500 THR THR X . n A 1 257 GLU 257 501 501 GLU GLU X . n A 1 258 MET 258 502 502 MET MET X . n A 1 259 GLY 259 503 503 GLY GLY X . n A 1 260 ASN 260 504 504 ASN ASN X . n A 1 261 ALA 261 505 505 ALA ALA X . n A 1 262 ALA 262 506 506 ALA ALA X . n A 1 263 VAL 263 507 507 VAL VAL X . n A 1 264 ASP 264 508 508 ASP ASP X . n A 1 265 LYS 265 509 509 LYS LYS X . n A 1 266 THR 266 510 510 THR THR X . n A 1 267 SER 267 511 511 SER SER X . n A 1 268 VAL 268 512 512 VAL VAL X . n A 1 269 ASN 269 513 513 ASN ASN X . n A 1 270 GLY 270 514 514 GLY GLY X . n A 1 271 GLN 271 515 515 GLN GLN X . n A 1 272 PHE 272 516 516 PHE PHE X . n A 1 273 LYS 273 517 517 LYS LYS X . n A 1 274 LEU 274 518 518 LEU LEU X . n A 1 275 ILE 275 519 519 ILE ILE X . n A 1 276 ILE 276 520 520 ILE ILE X . n A 1 277 ARG 277 521 521 ARG ARG X . n A 1 278 PHE 278 522 522 PHE PHE X . n A 1 279 ARG 279 523 523 ARG ARG X . n A 1 280 ILE 280 524 524 ILE ILE X . n A 1 281 LYS 281 525 525 LYS LYS X . n A 1 282 THR 282 526 526 THR THR X . n A 1 283 PRO 283 527 527 PRO PRO X . n A 1 284 GLU 284 528 528 GLU GLU X . n A 1 285 ASN 285 529 529 ASN ASN X . n A 1 286 THR 286 530 530 THR THR X . n A 1 287 VAL 287 531 531 VAL VAL X . n A 1 288 PHE 288 532 532 PHE PHE X . n A 1 289 VAL 289 533 533 VAL VAL X . n A 1 290 ASN 290 534 534 ASN ASN X . n A 1 291 ASN 291 535 535 ASN ASN X . n A 1 292 PRO 292 536 536 PRO PRO X . n A 1 293 ASN 293 537 537 ASN ASN X . n A 1 294 GLN 294 538 538 GLN GLN X . n A 1 295 LEU 295 539 539 LEU LEU X . n A 1 296 THR 296 540 540 THR THR X . n A 1 297 GLU 297 541 541 GLU GLU X . n A 1 298 VAL 298 542 542 VAL VAL X . n A 1 299 GLU 299 543 543 GLU GLU X . n A 1 300 LYS 300 544 544 LYS LYS X . n A 1 301 ASN 301 545 545 ASN ASN X . n A 1 302 LEU 302 546 546 LEU LEU X . n A 1 303 VAL 303 547 547 VAL VAL X . n A 1 304 ARG 304 548 548 ARG ARG X . n A 1 305 GLU 305 549 549 GLU GLU X . n A 1 306 ALA 306 550 550 ALA ALA X . n A 1 307 VAL 307 551 551 VAL VAL X . n A 1 308 LYS 308 552 552 LYS LYS X . n A 1 309 LYS 309 553 553 LYS LYS X . n A 1 310 SER 310 554 554 SER SER X . n A 1 311 ASN 311 555 555 ASN ASN X . n A 1 312 PRO 312 556 556 PRO PRO X . n A 1 313 ASP 313 557 557 ASP ASP X . n A 1 314 LEU 314 558 558 LEU LEU X . n A 1 315 ARG 315 559 559 ARG ARG X . n A 1 316 ALA 316 560 560 ALA ALA X . n A 1 317 GLN 317 561 561 GLN GLN X . n A 1 318 ASP 318 562 562 ASP ASP X . n A 1 319 VAL 319 563 563 VAL VAL X . n A 1 320 LEU 320 564 564 LEU LEU X . n A 1 321 ASN 321 565 565 ASN ASN X . n A 1 322 SER 322 566 566 SER SER X . n A 1 323 ASN 323 567 567 ASN ASN X . n A 1 324 TYR 324 568 568 TYR TYR X . n A 1 325 VAL 325 569 569 VAL VAL X . n A 1 326 THR 326 570 570 THR THR X . n A 1 327 GLY 327 571 571 GLY GLY X . n A 1 328 ILE 328 572 572 ILE ILE X . n A 1 329 THR 329 573 573 THR THR X . n A 1 330 VAL 330 574 574 VAL VAL X . n A 1 331 SER 331 575 575 SER SER X . n A 1 332 ASN 332 576 576 ASN ASN X . n A 1 333 ASN 333 577 577 ASN ASN X . n A 1 334 GLY 334 578 578 GLY GLY X . n A 1 335 THR 335 579 579 THR THR X . n A 1 336 THR 336 580 580 THR THR X . n A 1 337 THR 337 581 581 THR THR X . n A 1 338 ILE 338 582 582 ILE ILE X . n A 1 339 THR 339 583 583 THR THR X . n A 1 340 TYR 340 584 584 TYR TYR X . n A 1 341 ARG 341 585 585 ARG ARG X . n A 1 342 ASP 342 586 586 ASP ASP X . n A 1 343 GLY 343 587 587 GLY GLY X . n A 1 344 ARG 344 588 588 ARG ARG X . n A 1 345 LYS 345 589 589 LYS LYS X . n A 1 346 ASP 346 590 590 ASP ASP X . n A 1 347 ILE 347 591 591 ILE ILE X . n A 1 348 ILE 348 592 592 ILE ILE X . n A 1 349 ASP 349 593 593 ASP ASP X . n A 1 350 GLY 350 594 594 GLY GLY X . n A 1 351 SER 351 595 595 SER SER X . n A 1 352 LYS 352 596 596 LYS LYS X . n A 1 353 PHE 353 597 597 PHE PHE X . n A 1 354 ILE 354 598 598 ILE ILE X . n A 1 355 ASP 355 599 599 ASP ASP X . n A 1 356 THR 356 600 600 THR THR X . n A 1 357 ARG 357 601 601 ARG ARG X . n A 1 358 ALA 358 602 602 ALA ALA X . n A 1 359 GLY 359 603 603 GLY GLY X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL X . C 2 GOL 1 605 1 GOL GOL X . D 3 CD 1 604 1 CD CD X . E 4 RMY 1 606 1 RMY RMY X . F 5 NI 1 607 1 NI NI X . G 6 NA 1 608 1 NA NA X . H 7 MG 1 609 1 MG MG X . I 8 HOH 1 2 2 HOH HOH X . I 8 HOH 2 3 3 HOH HOH X . I 8 HOH 3 4 4 HOH HOH X . I 8 HOH 4 5 5 HOH HOH X . I 8 HOH 5 6 6 HOH HOH X . I 8 HOH 6 7 7 HOH HOH X . I 8 HOH 7 8 8 HOH HOH X . I 8 HOH 8 9 9 HOH HOH X . I 8 HOH 9 10 10 HOH HOH X . I 8 HOH 10 11 11 HOH HOH X . I 8 HOH 11 12 12 HOH HOH X . I 8 HOH 12 13 13 HOH HOH X . I 8 HOH 13 14 14 HOH HOH X . I 8 HOH 14 15 15 HOH HOH X . I 8 HOH 15 16 16 HOH HOH X . I 8 HOH 16 17 17 HOH HOH X . I 8 HOH 17 18 18 HOH HOH X . I 8 HOH 18 19 19 HOH HOH X . I 8 HOH 19 20 20 HOH HOH X . I 8 HOH 20 21 21 HOH HOH X . I 8 HOH 21 22 22 HOH HOH X . I 8 HOH 22 23 23 HOH HOH X . I 8 HOH 23 24 24 HOH HOH X . I 8 HOH 24 25 25 HOH HOH X . I 8 HOH 25 26 26 HOH HOH X . I 8 HOH 26 27 27 HOH HOH X . I 8 HOH 27 28 28 HOH HOH X . I 8 HOH 28 29 29 HOH HOH X . I 8 HOH 29 30 30 HOH HOH X . I 8 HOH 30 31 31 HOH HOH X . I 8 HOH 31 32 32 HOH HOH X . I 8 HOH 32 33 33 HOH HOH X . I 8 HOH 33 34 34 HOH HOH X . I 8 HOH 34 35 35 HOH HOH X . I 8 HOH 35 36 36 HOH HOH X . I 8 HOH 36 37 37 HOH HOH X . I 8 HOH 37 38 38 HOH HOH X . I 8 HOH 38 39 39 HOH HOH X . I 8 HOH 39 40 40 HOH HOH X . I 8 HOH 40 41 41 HOH HOH X . I 8 HOH 41 42 42 HOH HOH X . I 8 HOH 42 43 43 HOH HOH X . I 8 HOH 43 44 44 HOH HOH X . I 8 HOH 44 45 45 HOH HOH X . I 8 HOH 45 46 46 HOH HOH X . I 8 HOH 46 47 47 HOH HOH X . I 8 HOH 47 48 48 HOH HOH X . I 8 HOH 48 49 49 HOH HOH X . I 8 HOH 49 50 50 HOH HOH X . I 8 HOH 50 51 51 HOH HOH X . I 8 HOH 51 52 52 HOH HOH X . I 8 HOH 52 53 53 HOH HOH X . I 8 HOH 53 54 54 HOH HOH X . I 8 HOH 54 55 55 HOH HOH X . I 8 HOH 55 56 56 HOH HOH X . I 8 HOH 56 57 57 HOH HOH X . I 8 HOH 57 58 58 HOH HOH X . I 8 HOH 58 59 59 HOH HOH X . I 8 HOH 59 60 60 HOH HOH X . I 8 HOH 60 61 61 HOH HOH X . I 8 HOH 61 62 62 HOH HOH X . I 8 HOH 62 63 63 HOH HOH X . I 8 HOH 63 64 64 HOH HOH X . I 8 HOH 64 65 65 HOH HOH X . I 8 HOH 65 66 66 HOH HOH X . I 8 HOH 66 67 67 HOH HOH X . I 8 HOH 67 68 68 HOH HOH X . I 8 HOH 68 69 69 HOH HOH X . I 8 HOH 69 70 70 HOH HOH X . I 8 HOH 70 71 71 HOH HOH X . I 8 HOH 71 72 72 HOH HOH X . I 8 HOH 72 73 73 HOH HOH X . I 8 HOH 73 74 74 HOH HOH X . I 8 HOH 74 75 75 HOH HOH X . I 8 HOH 75 76 76 HOH HOH X . I 8 HOH 76 77 77 HOH HOH X . I 8 HOH 77 78 78 HOH HOH X . I 8 HOH 78 79 79 HOH HOH X . I 8 HOH 79 80 80 HOH HOH X . I 8 HOH 80 81 81 HOH HOH X . I 8 HOH 81 82 82 HOH HOH X . I 8 HOH 82 83 83 HOH HOH X . I 8 HOH 83 84 84 HOH HOH X . I 8 HOH 84 85 85 HOH HOH X . I 8 HOH 85 86 86 HOH HOH X . I 8 HOH 86 87 87 HOH HOH X . I 8 HOH 87 88 88 HOH HOH X . I 8 HOH 88 89 89 HOH HOH X . I 8 HOH 89 90 90 HOH HOH X . I 8 HOH 90 91 91 HOH HOH X . I 8 HOH 91 92 92 HOH HOH X . I 8 HOH 92 93 93 HOH HOH X . I 8 HOH 93 94 94 HOH HOH X . I 8 HOH 94 95 95 HOH HOH X . I 8 HOH 95 96 96 HOH HOH X . I 8 HOH 96 97 97 HOH HOH X . I 8 HOH 97 98 98 HOH HOH X . I 8 HOH 98 99 99 HOH HOH X . I 8 HOH 99 100 100 HOH HOH X . I 8 HOH 100 101 101 HOH HOH X . I 8 HOH 101 102 102 HOH HOH X . I 8 HOH 102 103 103 HOH HOH X . I 8 HOH 103 104 104 HOH HOH X . I 8 HOH 104 105 105 HOH HOH X . I 8 HOH 105 106 106 HOH HOH X . I 8 HOH 106 107 107 HOH HOH X . I 8 HOH 107 108 108 HOH HOH X . I 8 HOH 108 109 109 HOH HOH X . I 8 HOH 109 110 110 HOH HOH X . I 8 HOH 110 111 111 HOH HOH X . I 8 HOH 111 112 112 HOH HOH X . I 8 HOH 112 113 113 HOH HOH X . I 8 HOH 113 114 114 HOH HOH X . I 8 HOH 114 115 115 HOH HOH X . I 8 HOH 115 116 116 HOH HOH X . I 8 HOH 116 117 117 HOH HOH X . I 8 HOH 117 118 118 HOH HOH X . I 8 HOH 118 119 119 HOH HOH X . I 8 HOH 119 120 120 HOH HOH X . I 8 HOH 120 121 121 HOH HOH X . I 8 HOH 121 122 122 HOH HOH X . I 8 HOH 122 123 123 HOH HOH X . I 8 HOH 123 124 124 HOH HOH X . I 8 HOH 124 125 125 HOH HOH X . I 8 HOH 125 126 126 HOH HOH X . I 8 HOH 126 127 127 HOH HOH X . I 8 HOH 127 128 128 HOH HOH X . I 8 HOH 128 129 129 HOH HOH X . I 8 HOH 129 130 130 HOH HOH X . I 8 HOH 130 131 131 HOH HOH X . I 8 HOH 131 132 132 HOH HOH X . I 8 HOH 132 133 133 HOH HOH X . I 8 HOH 133 134 134 HOH HOH X . I 8 HOH 134 135 135 HOH HOH X . I 8 HOH 135 136 136 HOH HOH X . I 8 HOH 136 137 137 HOH HOH X . I 8 HOH 137 138 138 HOH HOH X . I 8 HOH 138 139 139 HOH HOH X . I 8 HOH 139 140 140 HOH HOH X . I 8 HOH 140 141 141 HOH HOH X . I 8 HOH 141 142 142 HOH HOH X . I 8 HOH 142 143 143 HOH HOH X . I 8 HOH 143 144 144 HOH HOH X . I 8 HOH 144 145 145 HOH HOH X . I 8 HOH 145 146 146 HOH HOH X . I 8 HOH 146 147 147 HOH HOH X . I 8 HOH 147 148 148 HOH HOH X . I 8 HOH 148 149 149 HOH HOH X . I 8 HOH 149 150 150 HOH HOH X . I 8 HOH 150 151 151 HOH HOH X . I 8 HOH 151 152 152 HOH HOH X . I 8 HOH 152 153 153 HOH HOH X . I 8 HOH 153 154 154 HOH HOH X . I 8 HOH 154 155 155 HOH HOH X . I 8 HOH 155 156 156 HOH HOH X . I 8 HOH 156 157 157 HOH HOH X . I 8 HOH 157 158 158 HOH HOH X . I 8 HOH 158 159 159 HOH HOH X . I 8 HOH 159 160 160 HOH HOH X . I 8 HOH 160 161 161 HOH HOH X . I 8 HOH 161 162 162 HOH HOH X . I 8 HOH 162 163 163 HOH HOH X . I 8 HOH 163 164 164 HOH HOH X . I 8 HOH 164 165 165 HOH HOH X . I 8 HOH 165 166 166 HOH HOH X . I 8 HOH 166 167 167 HOH HOH X . I 8 HOH 167 168 168 HOH HOH X . I 8 HOH 168 169 169 HOH HOH X . I 8 HOH 169 170 170 HOH HOH X . I 8 HOH 170 171 171 HOH HOH X . I 8 HOH 171 172 172 HOH HOH X . I 8 HOH 172 173 173 HOH HOH X . I 8 HOH 173 174 174 HOH HOH X . I 8 HOH 174 175 175 HOH HOH X . I 8 HOH 175 176 176 HOH HOH X . I 8 HOH 176 177 177 HOH HOH X . I 8 HOH 177 178 178 HOH HOH X . I 8 HOH 178 179 179 HOH HOH X . I 8 HOH 179 180 180 HOH HOH X . I 8 HOH 180 181 181 HOH HOH X . I 8 HOH 181 182 182 HOH HOH X . I 8 HOH 182 183 183 HOH HOH X . I 8 HOH 183 184 184 HOH HOH X . I 8 HOH 184 185 185 HOH HOH X . I 8 HOH 185 186 186 HOH HOH X . I 8 HOH 186 187 187 HOH HOH X . I 8 HOH 187 188 188 HOH HOH X . I 8 HOH 188 189 189 HOH HOH X . I 8 HOH 189 190 190 HOH HOH X . I 8 HOH 190 191 191 HOH HOH X . I 8 HOH 191 192 192 HOH HOH X . I 8 HOH 192 193 193 HOH HOH X . I 8 HOH 193 194 194 HOH HOH X . I 8 HOH 194 195 195 HOH HOH X . I 8 HOH 195 196 196 HOH HOH X . I 8 HOH 196 197 197 HOH HOH X . I 8 HOH 197 198 198 HOH HOH X . I 8 HOH 198 199 199 HOH HOH X . I 8 HOH 199 200 200 HOH HOH X . I 8 HOH 200 201 201 HOH HOH X . I 8 HOH 201 202 202 HOH HOH X . I 8 HOH 202 203 203 HOH HOH X . I 8 HOH 203 204 204 HOH HOH X . I 8 HOH 204 205 205 HOH HOH X . I 8 HOH 205 206 206 HOH HOH X . I 8 HOH 206 207 207 HOH HOH X . I 8 HOH 207 208 208 HOH HOH X . I 8 HOH 208 209 209 HOH HOH X . I 8 HOH 209 210 210 HOH HOH X . I 8 HOH 210 211 211 HOH HOH X . I 8 HOH 211 212 212 HOH HOH X . I 8 HOH 212 213 213 HOH HOH X . I 8 HOH 213 610 1 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 13 ? X HIS 257 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 39 ? 1_555 92.7 ? 2 NE2 ? A HIS 13 ? X HIS 257 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 5 ? 1_555 85.4 ? 3 O ? I HOH . ? X HOH 39 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 5 ? 1_555 167.3 ? 4 NE2 ? A HIS 13 ? X HIS 257 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 27 ? 1_555 96.2 ? 5 O ? I HOH . ? X HOH 39 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 27 ? 1_555 84.7 ? 6 O ? I HOH . ? X HOH 5 ? 1_555 NI ? F NI . ? X NI 607 ? 1_555 O ? I HOH . ? X HOH 27 ? 1_555 83.0 ? 7 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 93.1 ? 8 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 128.2 ? 9 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 134.7 ? 10 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 93.5 ? 11 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 83.1 ? 12 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 108.4 ? 13 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 83.0 ? 14 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 91.4 ? 15 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 78.1 ? 16 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 173.4 ? 17 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 146.4 ? 18 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 53.6 ? 19 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 84.8 ? 20 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 79.4 ? 21 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 100.4 ? 22 O ? A GLU 157 ? X GLU 401 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 83.3 ? 23 OD2 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 166.6 ? 24 OD2 ? A ASP 155 ? X ASP 399 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 54.4 ? 25 OD1 ? A ASN 184 ? X ASN 428 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 84.2 ? 26 OD2 ? A ASP 246 ? X ASP 490 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 100.9 ? 27 OD1 ? A ASP 183 ? X ASP 427 ? 1_555 CD ? D CD . ? X CD 604 ? 1_555 OD1 ? A ASP 155 ? X ASP 399 ? 1_555 127.8 ? 28 O ? I HOH . ? X HOH 11 ? 1_555 MG ? H MG . ? X MG 609 ? 1_555 O ? I HOH . ? X HOH 9 ? 1_555 124.0 ? 29 O ? A ASN 219 ? X ASN 463 ? 1_555 NA ? G NA . ? X NA 608 ? 1_555 O ? A ASP 183 ? X ASP 427 ? 1_555 129.6 ? 30 O ? A ASN 219 ? X ASN 463 ? 1_555 NA ? G NA . ? X NA 608 ? 1_555 OD1 ? A ASN 186 ? X ASN 430 ? 1_555 92.9 ? 31 O ? A ASP 183 ? X ASP 427 ? 1_555 NA ? G NA . ? X NA 608 ? 1_555 OD1 ? A ASN 186 ? X ASN 430 ? 1_555 63.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-03 2 'Structure model' 1 1 2012-12-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 5.4058 2.5290 37.9554 0.0845 0.0484 0.0419 0.0253 -0.0068 0.0019 0.6912 0.3317 2.6958 0.3098 -1.0429 -0.6225 0.0158 -0.0460 0.0041 -0.0832 -0.0528 -0.0165 0.2126 0.2159 0.0369 'X-RAY DIFFRACTION' 2 ? refined -23.3584 -2.4550 79.8577 0.0220 0.0613 0.0834 -0.0026 -0.0168 -0.0050 0.5127 0.3835 0.8193 0.1746 -0.2690 -0.2590 -0.0118 -0.0891 -0.0059 -0.0224 0.0108 0.0683 0.0308 -0.0630 0.0010 'X-RAY DIFFRACTION' 3 ? refined -45.4515 3.8012 106.7697 0.0214 0.3063 0.1301 0.0551 0.0226 -0.0434 3.1730 0.9095 0.9481 -1.3962 -0.8284 0.5986 -0.1167 -0.3955 0.2227 0.0895 0.0850 0.0700 0.0370 -0.1131 0.0317 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 X 245 ? ? X 398 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 X 399 ? ? X 523 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 X 524 ? ? X 603 ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC5 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 REFMAC 5.5.0109 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS X 257 ? ? -165.98 115.88 2 1 ASP X 262 ? ? -146.13 20.61 3 1 LYS X 290 ? ? 57.81 -142.52 4 1 ASN X 322 ? ? 169.45 140.37 5 1 SER X 323 ? ? 153.03 88.11 6 1 ALA X 326 ? ? 93.50 -54.14 7 1 THR X 381 ? ? -117.58 -94.65 8 1 ASN X 430 ? ? 57.51 18.72 9 1 PHE X 597 ? ? -150.86 1.47 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'CADMIUM ION' CD 4 'ethyl 3-O-[5-(acetylamino)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl]-1-thio-beta-D-galactopyranoside' RMY 5 'NICKEL (II) ION' NI 6 'SODIUM ION' NA 7 'MAGNESIUM ION' MG 8 water HOH #