HEADER SUGAR BINDING PROTEIN 17-JAN-11 3QD1 OBSLTE 26-DEC-12 3QD1 4I8E TITLE GSPB PLUS ALPHA-2,3-SIALYL (1-THIOETHYL)GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET BINDING PROTEIN GSPB; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GORDONII; SOURCE 3 ORGANISM_TAXID: 1302; SOURCE 4 GENE: GSPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-3X KEYWDS CARBOHYDRATE, ANTIGEN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.PYBURN,T.M.IVERSON REVDAT 2 26-DEC-12 3QD1 1 OBSLTE REVDAT 1 03-AUG-11 3QD1 0 JRNL AUTH T.M.PYBURN,B.A.BENSING,Y.Q.XIONG,B.J.MELANCON,T.M.TOMASIAK, JRNL AUTH 2 N.J.WARD,V.YANKOVSKAYA,K.M.OLIVER,G.CECCHINI,G.A.SULIKOWSKI, JRNL AUTH 3 M.J.TYSKA,P.M.SULLAM,T.M.IVERSON JRNL TITL A STRUCTURAL MODEL FOR BINDING OF THE SERINE-RICH REPEAT JRNL TITL 2 ADHESIN GSPB TO HOST CARBOHYDRATE RECEPTORS. JRNL REF PLOS PATHOG. V. 7 02112 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21765814 JRNL DOI 10.1371/JOURNAL.PPAT.1002112 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2879 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3937 ; 1.301 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 6.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;37.447 ;24.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;13.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.793 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2165 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1779 ; 0.635 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2914 ; 1.195 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.058 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1016 ; 3.458 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 245 X 398 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4058 2.5290 37.9554 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.0484 REMARK 3 T33: 0.0419 T12: 0.0253 REMARK 3 T13: -0.0068 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6912 L22: 0.3317 REMARK 3 L33: 2.6958 L12: 0.3098 REMARK 3 L13: -1.0429 L23: -0.6225 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0460 S13: 0.0041 REMARK 3 S21: -0.0832 S22: -0.0528 S23: -0.0165 REMARK 3 S31: 0.2126 S32: 0.2159 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 399 X 523 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3584 -2.4550 79.8577 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.0613 REMARK 3 T33: 0.0834 T12: -0.0026 REMARK 3 T13: -0.0168 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5127 L22: 0.3835 REMARK 3 L33: 0.8193 L12: 0.1746 REMARK 3 L13: -0.2690 L23: -0.2590 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: -0.0891 S13: -0.0059 REMARK 3 S21: -0.0224 S22: 0.0108 S23: 0.0683 REMARK 3 S31: 0.0308 S32: -0.0630 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 524 X 603 REMARK 3 ORIGIN FOR THE GROUP (A): -45.4515 3.8012 106.7697 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: 0.3063 REMARK 3 T33: 0.1301 T12: 0.0551 REMARK 3 T13: 0.0226 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.1730 L22: 0.9095 REMARK 3 L33: 0.9481 L12: -1.3962 REMARK 3 L13: -0.8284 L23: 0.5986 REMARK 3 S TENSOR REMARK 3 S11: -0.1167 S12: -0.3955 S13: 0.2227 REMARK 3 S21: 0.0895 S22: 0.0850 S23: 0.0700 REMARK 3 S31: 0.0370 S32: -0.1131 S33: 0.0317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3QD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB063490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07806 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6 MG/ML GSPB IN BUFFER CONTAINING 1 MM REMARK 280 ALPHA-2,3-SIALYL(1-THIOETHYL)GALACTOSE AND 20 MM TRIS, 8% REMARK 280 PEG3350, 7.5MM COCL2, 7.5MM NICL2, 7.5MM CDCL2, 7.5MM MGCL2, 0.1M REMARK 280 HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.01450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 257 115.88 -165.98 REMARK 500 ASP X 262 20.61 -146.13 REMARK 500 LYS X 290 -142.52 57.81 REMARK 500 ASN X 322 140.37 169.45 REMARK 500 SER X 323 88.11 153.03 REMARK 500 ALA X 326 -54.14 93.50 REMARK 500 THR X 381 -94.65 -117.58 REMARK 500 ASN X 430 18.72 57.51 REMARK 500 PHE X 597 1.47 -150.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X 607 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 257 NE2 REMARK 620 2 HOH X 39 O 92.7 REMARK 620 3 HOH X 5 O 85.4 167.3 REMARK 620 4 HOH X 27 O 96.2 84.7 83.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD X 604 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 401 O REMARK 620 2 ASP X 427 OD2 93.1 REMARK 620 3 ASP X 399 OD2 128.2 134.7 REMARK 620 4 ASN X 428 OD1 93.5 83.1 108.4 REMARK 620 5 ASP X 490 OD2 83.0 91.4 78.1 173.4 REMARK 620 6 ASP X 427 OD1 146.4 53.6 84.8 79.4 100.4 REMARK 620 7 ASP X 399 OD1 83.3 166.6 54.4 84.2 100.9 127.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 11 O REMARK 620 2 HOH X 9 O 124.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 608 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 463 O REMARK 620 2 ASP X 427 O 129.6 REMARK 620 3 ASN X 430 OD1 92.9 63.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD X 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RMY X 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI X 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QC5 RELATED DB: PDB REMARK 900 RELATED ID: 3QC6 RELATED DB: PDB DBREF 3QD1 X 245 603 UNP Q939N5 Q939N5_STRGN 245 603 SEQADV 3QD1 SER X 444 UNP Q939N5 ASN 444 ENGINEERED MUTATION SEQRES 1 X 359 ARG ALA VAL THR GLU SER ALA PRO ASN VAL GLU TYR HIS SEQRES 2 X 359 ASP VAL LYS GLY ASP MET ILE GLN SER VAL THR THR SER SEQRES 3 X 359 PHE ASP ASP THR SER ARG LEU LEU THR TRP THR ILE ASN SEQRES 4 X 359 LEU THR PRO ARG GLN VAL LYS SER ASN LEU GLY ALA LEU SEQRES 5 X 359 VAL SER ILE SER GLY ASN GLN GLU THR ARG THR VAL THR SEQRES 6 X 359 ILE ASN GLY LYS ASN ALA ALA ASN GLY GLY VAL TYR ASN SEQRES 7 X 359 SER GLY GLY ALA TRP ASN LEU TYR THR GLY GLU SER VAL SEQRES 8 X 359 ASN ASN ASN VAL LEU ARG ILE THR THR GLN VAL ASN ASP SEQRES 9 X 359 THR GLY GLY GLU VAL LYS LEU GLY LEU ARG LEU VAL THR SEQRES 10 X 359 SER ASP LYS LYS ILE THR LYS THR ASN LEU PRO LEU GLU SEQRES 11 X 359 PHE SER GLN VAL ALA ALA THR THR ASN GLY SER TRP ASP SEQRES 12 X 359 LYS ALA GLY TYR ASN THR THR ILE VAL GLU LYS ASP THR SEQRES 13 X 359 GLU ARG PRO VAL VAL ASN VAL PRO SER GLU ILE THR VAL SEQRES 14 X 359 TYR ARG GLY GLU SER PHE GLU TYR PHE ALA THR VAL THR SEQRES 15 X 359 ASP ASN SER ASN ALA PHE ASP LEU ALA LYS THR VAL VAL SEQRES 16 X 359 ARG TRP LEU TYR SER ASN GLN PRO GLY ARG GLY THR GLU SEQRES 17 X 359 TRP LEU GLN TYR SER VAL THR GLN VAL GLY ASN GLN LEU SEQRES 18 X 359 LYS VAL ARG ILE PHE GLY ASN VAL PRO ILE ASP THR THR SEQRES 19 X 359 ILE GLY ASP TYR THR ARG TYR VAL VAL ALA THR ASP ALA SEQRES 20 X 359 ALA GLY ASN VAL ASN ALA THR GLN THR GLU MET GLY ASN SEQRES 21 X 359 ALA ALA VAL ASP LYS THR SER VAL ASN GLY GLN PHE LYS SEQRES 22 X 359 LEU ILE ILE ARG PHE ARG ILE LYS THR PRO GLU ASN THR SEQRES 23 X 359 VAL PHE VAL ASN ASN PRO ASN GLN LEU THR GLU VAL GLU SEQRES 24 X 359 LYS ASN LEU VAL ARG GLU ALA VAL LYS LYS SER ASN PRO SEQRES 25 X 359 ASP LEU ARG ALA GLN ASP VAL LEU ASN SER ASN TYR VAL SEQRES 26 X 359 THR GLY ILE THR VAL SER ASN ASN GLY THR THR THR ILE SEQRES 27 X 359 THR TYR ARG ASP GLY ARG LYS ASP ILE ILE ASP GLY SER SEQRES 28 X 359 LYS PHE ILE ASP THR ARG ALA GLY HET GOL X 1 6 HET GOL X 605 6 HET CD X 604 1 HET RMY X 606 34 HET NI X 607 1 HET NA X 608 1 HET MG X 609 1 HETNAM GOL GLYCEROL HETNAM CD CADMIUM ION HETNAM RMY ETHYL 3-O-[5-(ACETYLAMINO)-3,5-DIDEOXY-D-GLYCERO-ALPHA- HETNAM 2 RMY D-GALACTO-NON-2-ULOPYRANONOSYL]-1-THIO-BETA-D- HETNAM 3 RMY GALACTOPYRANOSIDE HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN RMY ALPHA-2,3-SIALYL (1-THIOETHYL)GALACTOSE FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 CD CD 2+ FORMUL 5 RMY C19 H33 N O13 S FORMUL 6 NI NI 2+ FORMUL 7 NA NA 1+ FORMUL 8 MG MG 2+ FORMUL 9 HOH *213(H2 O) HELIX 1 1 GLU X 374 VAL X 378 5 5 HELIX 2 2 ASP X 433 THR X 437 5 5 HELIX 3 3 THR X 498 LYS X 509 1 12 HELIX 4 4 THR X 540 ASN X 555 1 16 HELIX 5 5 ARG X 559 SER X 566 5 8 HELIX 6 6 ASN X 567 GLY X 571 1 5 HELIX 7 7 ASP X 593 LYS X 596 5 4 SHEET 1 A 6 VAL X 247 SER X 250 0 SHEET 2 A 6 ILE X 264 ASP X 272 -1 O THR X 269 N SER X 250 SHEET 3 A 6 LEU X 277 LEU X 284 -1 O ASN X 283 N GLN X 265 SHEET 4 A 6 ASN X 338 VAL X 346 -1 O LEU X 340 N ILE X 282 SHEET 5 A 6 GLN X 303 ILE X 310 -1 N ARG X 306 O THR X 343 SHEET 6 A 6 LYS X 313 ASN X 314 -1 O LYS X 313 N ILE X 310 SHEET 1 B 6 ASN X 253 HIS X 257 0 SHEET 2 B 6 TRP X 386 ILE X 395 -1 O GLY X 390 N TYR X 256 SHEET 3 B 6 GLY X 351 SER X 362 -1 N VAL X 353 O THR X 393 SHEET 4 B 6 ASN X 292 ILE X 299 -1 N ASN X 292 O SER X 362 SHEET 5 B 6 TRP X 327 GLU X 333 -1 O TYR X 330 N ALA X 295 SHEET 6 B 6 ALA X 316 VAL X 320 -1 N GLY X 318 O LEU X 329 SHEET 1 C 4 VAL X 404 ASN X 406 0 SHEET 2 C 4 SER X 418 THR X 426 -1 O THR X 424 N ASN X 406 SHEET 3 C 4 GLN X 464 ASN X 472 -1 O ILE X 469 N TYR X 421 SHEET 4 C 4 GLN X 455 VAL X 461 -1 N THR X 459 O LYS X 466 SHEET 1 D 4 GLU X 410 TYR X 414 0 SHEET 2 D 4 GLN X 515 ARG X 521 1 O ILE X 519 N VAL X 413 SHEET 3 D 4 GLY X 480 VAL X 487 -1 N TYR X 482 O LEU X 518 SHEET 4 D 4 VAL X 438 ARG X 440 -1 N ARG X 440 O TYR X 485 SHEET 1 E 2 VAL X 531 VAL X 533 0 SHEET 2 E 2 ILE X 598 THR X 600 1 O ASP X 599 N VAL X 531 SHEET 1 F 3 ILE X 572 VAL X 574 0 SHEET 2 F 3 THR X 580 THR X 583 -1 O THR X 581 N THR X 573 SHEET 3 F 3 LYS X 589 ILE X 592 -1 O ILE X 592 N THR X 580 LINK NE2 HIS X 257 NI NI X 607 1555 1555 2.09 LINK NI NI X 607 O HOH X 39 1555 1555 2.09 LINK NI NI X 607 O HOH X 5 1555 1555 2.18 LINK NI NI X 607 O HOH X 27 1555 1555 2.21 LINK O GLU X 401 CD CD X 604 1555 1555 2.32 LINK OD2 ASP X 427 CD CD X 604 1555 1555 2.33 LINK OD2 ASP X 399 CD CD X 604 1555 1555 2.36 LINK OD1 ASN X 428 CD CD X 604 1555 1555 2.37 LINK OD2 ASP X 490 CD CD X 604 1555 1555 2.43 LINK OD1 ASP X 427 CD CD X 604 1555 1555 2.46 LINK OD1 ASP X 399 CD CD X 604 1555 1555 2.50 LINK MG MG X 609 O HOH X 11 1555 1555 2.70 LINK O ASN X 463 NA NA X 608 1555 1555 2.76 LINK MG MG X 609 O HOH X 9 1555 1555 2.76 LINK O ASP X 427 NA NA X 608 1555 1555 3.00 LINK OD1 ASN X 430 NA NA X 608 1555 1555 3.03 CISPEP 1 ASN X 322 SER X 323 0 -8.57 CISPEP 2 SER X 323 GLY X 324 0 -29.05 SITE 1 AC1 7 HOH X 144 HOH X 145 HOH X 166 ASP X 262 SITE 2 AC1 7 MET X 263 ILE X 264 THR X 285 SITE 1 AC2 6 HOH X 138 ALA X 505 LYS X 509 THR X 510 SITE 2 AC2 6 SER X 511 GLN X 515 SITE 1 AC3 5 ASP X 399 GLU X 401 ASP X 427 ASN X 428 SITE 2 AC3 5 ASP X 490 SITE 1 AC4 15 HOH X 197 HOH X 199 HOH X 201 HOH X 202 SITE 2 AC4 15 HOH X 213 TRP X 441 LEU X 442 TYR X 443 SITE 3 AC4 15 ARG X 449 ASP X 481 TYR X 482 THR X 483 SITE 4 AC4 15 ARG X 484 ALA X 506 VAL X 507 SITE 1 AC5 4 HOH X 5 HOH X 27 HOH X 39 HIS X 257 SITE 1 AC6 4 THR X 426 ASP X 427 ASN X 430 ASN X 463 SITE 1 AC7 5 HOH X 9 HOH X 11 VAL X 405 ASN X 406 SITE 2 AC7 5 VAL X 407 CRYST1 69.900 34.029 83.394 90.00 99.16 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.002307 0.00000 SCALE2 0.000000 0.029387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012146 0.00000