HEADER ISOMERASE 17-JAN-11 3QD5 TITLE CRYSTAL STRUCTURE OF A PUTATIVE RIBOSE-5-PHOSPHATE ISOMERASE FROM TITLE 2 COCCIDIOIDES IMMITIS SOLVED BY COMBINED IODIDE ION SAD AND MR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RIBOSE-5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS; SOURCE 3 ORGANISM_TAXID: 246410; SOURCE 4 STRAIN: RS; SOURCE 5 GENE: CIMG_07932, 4559626; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, COCCIDIOIDOMYCOSIS, PUTATIVE KEYWDS 3 UNCHARACTERIZED PROTEIN, HYPOTHETICAL PROTEIN, RIBOSE-5-PHOSPHATE KEYWDS 4 ISOMERASE, IODIDE ION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 27-SEP-17 3QD5 1 REMARK REVDAT 2 26-OCT-11 3QD5 1 JRNL VERSN REVDAT 1 09-FEB-11 3QD5 0 JRNL AUTH T.E.EDWARDS,A.B.ABRAMOV,E.R.SMITH,R.O.BAYDO,J.T.LEONARD, JRNL AUTH 2 D.J.LEIBLY,K.B.THOMPKINS,M.C.CLIFTON,A.S.GARDBERG, JRNL AUTH 3 B.L.STAKER,W.C.VAN VOORHIS,P.J.MYLER,L.J.STEWART JRNL TITL STRUCTURAL CHARACTERIZATION OF A RIBOSE-5-PHOSPHATE JRNL TITL 2 ISOMERASE B FROM THE PATHOGENIC FUNGUS COCCIDIOIDES IMMITIS. JRNL REF BMC STRUCT.BIOL. V. 11 39 2011 JRNL REFN ESSN 1472-6807 JRNL PMID 21995815 JRNL DOI 10.1186/1472-6807-11-39 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2456 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3345 ; 1.364 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 7.517 ; 5.235 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;38.448 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;12.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1810 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 0.729 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2594 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 844 ; 2.329 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 744 ; 3.778 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2803 10.1056 16.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0161 REMARK 3 T33: 0.0207 T12: 0.0065 REMARK 3 T13: -0.0010 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.2894 L22: 0.7335 REMARK 3 L33: 0.3365 L12: -0.1113 REMARK 3 L13: -0.0407 L23: 0.2273 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0222 S13: 0.0008 REMARK 3 S21: -0.0600 S22: 0.0279 S23: 0.0745 REMARK 3 S31: -0.0389 S32: -0.0225 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2236 -7.3692 12.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0121 REMARK 3 T33: 0.0119 T12: -0.0058 REMARK 3 T13: 0.0004 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.4193 L22: 0.6069 REMARK 3 L33: 0.2319 L12: 0.0459 REMARK 3 L13: 0.0006 L23: -0.0629 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0009 S13: -0.0282 REMARK 3 S21: -0.0736 S22: 0.0309 S23: -0.0123 REMARK 3 S31: 0.0178 S32: 0.0031 S33: -0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COIMA.00584.A.A1 PS00647 82 MG/ML REMARK 280 AGAINST JCSG+ SCREEN CONDITION B9, 20% PEG 6000, 0.1 M NA REMARK 280 CITRATE PH 5.0, AND SOAKED INTO 20% PEG 6000, 0.1 M NA CITRATE REMARK 280 PH 5.0, 0.7 M NAI, 22% ETHYLENE GLYCOL FOR ONE MINUTE, CRYSTAL REMARK 280 TRACKING ID 216516B9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.57500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.57500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.36359 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.72631 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 176 LIES ON A SPECIAL POSITION. REMARK 375 I IOD B 175 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 163 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ASN B 163 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 104 O HOH B 256 2.13 REMARK 500 O HOH A 189 O HOH A 244 2.17 REMARK 500 I IOD B 176 O HOH B 255 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: COIMA.00584.A RELATED DB: TARGETDB DBREF 3QD5 A -3 163 PDB 3QD5 3QD5 -3 163 DBREF 3QD5 B -3 163 PDB 3QD5 3QD5 -3 163 SEQRES 1 A 167 GLY PRO GLY SER MET ALA ALA THR PRO LEU PRO PRO LEU SEQRES 2 A 167 ARG LEU ALA ILE ALA CYS ASP ASP ALA GLY VAL SER TYR SEQRES 3 A 167 LYS GLU ALA LEU LYS ALA HIS LEU SER ASP ASN PRO LEU SEQRES 4 A 167 VAL SER SER ILE THR ASP VAL GLY VAL THR SER THR THR SEQRES 5 A 167 ASP LYS THR ALA TYR PRO HIS VAL ALA ILE GLN ALA ALA SEQRES 6 A 167 GLN LEU ILE LYS ASP GLY LYS VAL ASP ARG ALA LEU MET SEQRES 7 A 167 ILE CSO GLY THR GLY LEU GLY VAL ALA ILE SER ALA ASN SEQRES 8 A 167 LYS VAL PRO GLY ILE ARG ALA VAL THR ALA HIS ASP THR SEQRES 9 A 167 PHE SER VAL GLU ARG ALA ILE LEU SER ASN ASP ALA GLN SEQRES 10 A 167 VAL LEU CYS PHE GLY GLN ARG VAL ILE GLY ILE GLU LEU SEQRES 11 A 167 ALA LYS ARG LEU ALA GLY GLU TRP LEU THR TYR ARG PHE SEQRES 12 A 167 ASP GLN LYS SER ALA SER ALA GLN LYS VAL GLN ALA ILE SEQRES 13 A 167 SER ASP TYR GLU LYS LYS PHE VAL GLU VAL ASN SEQRES 1 B 167 GLY PRO GLY SER MET ALA ALA THR PRO LEU PRO PRO LEU SEQRES 2 B 167 ARG LEU ALA ILE ALA CYS ASP ASP ALA GLY VAL SER TYR SEQRES 3 B 167 LYS GLU ALA LEU LYS ALA HIS LEU SER ASP ASN PRO LEU SEQRES 4 B 167 VAL SER SER ILE THR ASP VAL GLY VAL THR SER THR THR SEQRES 5 B 167 ASP LYS THR ALA TYR PRO HIS VAL ALA ILE GLN ALA ALA SEQRES 6 B 167 GLN LEU ILE LYS ASP GLY LYS VAL ASP ARG ALA LEU MET SEQRES 7 B 167 ILE CSO GLY THR GLY LEU GLY VAL ALA ILE SER ALA ASN SEQRES 8 B 167 LYS VAL PRO GLY ILE ARG ALA VAL THR ALA HIS ASP THR SEQRES 9 B 167 PHE SER VAL GLU ARG ALA ILE LEU SER ASN ASP ALA GLN SEQRES 10 B 167 VAL LEU CYS PHE GLY GLN ARG VAL ILE GLY ILE GLU LEU SEQRES 11 B 167 ALA LYS ARG LEU ALA GLY GLU TRP LEU THR TYR ARG PHE SEQRES 12 B 167 ASP GLN LYS SER ALA SER ALA GLN LYS VAL GLN ALA ILE SEQRES 13 B 167 SER ASP TYR GLU LYS LYS PHE VAL GLU VAL ASN MODRES 3QD5 CSO A 76 CYS S-HYDROXYCYSTEINE MODRES 3QD5 CSO B 76 CYS S-HYDROXYCYSTEINE HET CSO A 76 11 HET CSO B 76 11 HET EDO A 164 4 HET IOD A 165 1 HET IOD A 166 1 HET IOD A 167 1 HET IOD A 168 1 HET IOD A 169 1 HET IOD A 170 1 HET IOD A 171 1 HET IOD A 172 1 HET IOD A 173 1 HET IOD A 174 1 HET IOD A 175 1 HET IOD A 176 1 HET IOD A 177 1 HET EDO B 164 4 HET IOD B 165 1 HET IOD B 166 1 HET IOD B 167 1 HET IOD B 168 1 HET IOD B 169 1 HET IOD B 170 1 HET IOD B 171 1 HET IOD B 172 1 HET IOD B 173 1 HET IOD B 174 1 HET IOD B 175 1 HET IOD B 176 1 HET IOD B 177 1 HET IOD B 178 1 HET IOD B 179 1 HET IOD B 180 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 IOD 29(I 1-) FORMUL 34 HOH *213(H2 O) HELIX 1 1 GLY A 19 ASP A 32 1 14 HELIX 2 2 ALA A 52 ASP A 66 1 15 HELIX 3 3 GLY A 79 LYS A 88 1 10 HELIX 4 4 ASP A 99 SER A 109 1 11 HELIX 5 5 GLY A 123 LEU A 135 1 13 HELIX 6 6 SER A 143 LYS A 157 1 15 HELIX 7 7 GLY B 19 ASP B 32 1 14 HELIX 8 8 ALA B 52 ASP B 66 1 15 HELIX 9 9 GLY B 79 LYS B 88 1 10 HELIX 10 10 ASP B 99 SER B 109 1 11 HELIX 11 11 GLY B 123 LEU B 135 1 13 HELIX 12 12 ALA B 144 LYS B 157 1 14 SHEET 1 A 5 VAL A 36 GLY A 43 0 SHEET 2 A 5 LEU A 9 CYS A 15 1 N ILE A 13 O VAL A 42 SHEET 3 A 5 ARG A 71 CSO A 76 1 O ILE A 75 N ALA A 14 SHEET 4 A 5 VAL A 114 GLY A 118 1 O LEU A 115 N MET A 74 SHEET 5 A 5 ALA A 94 THR A 96 1 N VAL A 95 O CYS A 116 SHEET 1 B 2 PHE A 159 GLU A 161 0 SHEET 2 B 2 PHE B 159 GLU B 161 -1 O VAL B 160 N VAL A 160 SHEET 1 C 5 VAL B 36 ASP B 41 0 SHEET 2 C 5 LEU B 9 CYS B 15 1 N LEU B 11 O SER B 38 SHEET 3 C 5 ARG B 71 CSO B 76 1 O LEU B 73 N ALA B 12 SHEET 4 C 5 VAL B 114 GLY B 118 1 O LEU B 115 N MET B 74 SHEET 5 C 5 ALA B 94 THR B 96 1 N VAL B 95 O CYS B 116 LINK C ILE A 75 N CSO A 76 1555 1555 1.33 LINK C CSO A 76 N GLY A 77 1555 1555 1.32 LINK C ILE B 75 N CSO B 76 1555 1555 1.32 LINK C CSO B 76 N GLY B 77 1555 1555 1.33 CISPEP 1 GLY A 43 VAL A 44 0 -3.19 CISPEP 2 GLY B 43 VAL B 44 0 -3.52 SITE 1 AC1 5 ARG A 71 ASP A 111 ALA A 112 HOH A 205 SITE 2 AC1 5 HOH A 256 SITE 1 AC2 5 ARG B 71 ASP B 111 ALA B 112 HOH B 212 SITE 2 AC2 5 HOH B 264 SITE 1 AC3 2 IOD A 166 HOH A 241 SITE 1 AC4 1 IOD A 165 SITE 1 AC5 2 IOD A 168 HOH B 182 SITE 1 AC6 2 ARG A 138 IOD A 167 SITE 1 AC7 4 CSO A 76 THR A 78 GLY A 81 HOH A 195 SITE 1 AC8 1 IOD A 171 SITE 1 AC9 4 GLY A 77 ARG A 120 IOD A 170 HOH A 278 SITE 1 BC1 2 ALA A 52 ALA B 151 SITE 1 BC2 2 GLN A 62 TYR B 155 SITE 1 BC3 2 ASP A 99 THR A 100 SITE 1 BC4 2 HOH A 243 ARG B 120 SITE 1 BC5 1 IOD B 180 SITE 1 BC6 4 TYR A 155 SER B 46 HOH B 202 HOH B 214 SITE 1 BC7 2 ALA B 52 HIS B 55 SITE 1 BC8 2 ASP B 99 THR B 100 SITE 1 BC9 3 HIS B 29 HOH B 253 HOH B 255 SITE 1 CC1 2 GLN B 141 LYS B 142 SITE 1 CC2 1 HOH B 191 SITE 1 CC3 2 IOD B 166 HOH B 197 CRYST1 103.150 49.890 61.970 90.00 108.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009695 0.000000 0.003266 0.00000 SCALE2 0.000000 0.020044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017028 0.00000